data_VKX # _chem_comp.id VKX _chem_comp.name "(5R,8aS)-8a-phenylhexahydropyrrolo[1,2-a]pyrimidin-6(2H)-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H16 N2 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-08-29 _chem_comp.pdbx_modified_date 2022-10-28 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 216.279 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VKX _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7FLK _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VKX N1 N1 N 0 1 N N N 28.359 14.261 42.002 -0.608 1.795 0.579 N1 VKX 1 VKX C7 C1 C 0 1 N N N 26.981 16.283 41.651 -0.579 -0.292 1.920 C7 VKX 2 VKX C8 C2 C 0 1 N N N 27.292 17.696 41.333 -1.091 -1.686 1.481 C8 VKX 3 VKX C9 C3 C 0 1 N N N 28.777 17.761 41.465 -1.621 -1.465 0.079 C9 VKX 4 VKX C1 C4 C 0 1 Y N N 29.678 15.330 37.852 2.846 -1.181 -0.897 C1 VKX 5 VKX C5 C5 C 0 1 Y N N 27.388 14.845 37.798 3.443 0.884 0.158 C5 VKX 6 VKX C6 C6 C 0 1 N N S 28.286 15.688 41.317 -0.275 0.364 0.561 C6 VKX 7 VKX C4 C7 C 0 1 Y N N 27.266 15.174 39.106 2.123 1.081 0.519 C4 VKX 8 VKX C3 C8 C 0 1 Y N N 28.378 15.546 39.786 1.164 0.149 0.167 C3 VKX 9 VKX C2 C9 C 0 1 Y N N 29.590 15.646 39.146 1.526 -0.984 -0.536 C2 VKX 10 VKX O O1 O 0 1 N N N 29.496 18.557 41.231 -2.323 -2.245 -0.529 O VKX 11 VKX N N2 N 0 1 N N N 29.183 16.565 41.909 -1.203 -0.284 -0.388 N VKX 12 VKX C10 C10 C 0 1 N N N 30.463 16.311 42.218 -1.613 0.394 -1.630 C10 VKX 13 VKX C11 C11 C 0 1 N N N 30.647 14.824 42.126 -2.329 1.685 -1.212 C11 VKX 14 VKX C12 C12 C 0 1 N N N 29.579 14.114 42.787 -2.012 2.027 0.240 C12 VKX 15 VKX C C13 C 0 1 Y N N 28.548 14.909 37.165 3.804 -0.247 -0.551 C VKX 16 VKX H1 H1 H 0 1 N N N 27.568 14.147 42.604 -0.377 2.208 1.470 H1 VKX 17 VKX H3 H3 H 0 1 N N N 26.172 15.886 41.021 -1.353 0.258 2.455 H3 VKX 18 VKX H4 H4 H 0 1 N N N 26.722 16.145 42.711 0.324 -0.379 2.523 H4 VKX 19 VKX H5 H5 H 0 1 N N N 26.803 18.377 42.046 -0.273 -2.406 1.470 H5 VKX 20 VKX H6 H6 H 0 1 N N N 26.976 17.948 40.310 -1.889 -2.024 2.142 H6 VKX 21 VKX H7 H7 H 0 1 N N N 30.627 15.402 37.341 3.129 -2.067 -1.446 H7 VKX 22 VKX H8 H8 H 0 1 N N N 26.512 14.521 37.255 4.192 1.611 0.432 H8 VKX 23 VKX H9 H9 H 0 1 N N N 26.304 15.141 39.596 1.842 1.962 1.077 H9 VKX 24 VKX H10 H10 H 0 1 N N N 30.465 15.978 39.686 0.778 -1.716 -0.803 H10 VKX 25 VKX H11 H11 H 0 1 N N N 31.132 16.820 41.508 -0.736 0.632 -2.232 H11 VKX 26 VKX H12 H12 H 0 1 N N N 30.681 16.657 43.239 -2.292 -0.244 -2.197 H12 VKX 27 VKX H13 H13 H 0 1 N N N 30.667 14.532 41.066 -2.001 2.502 -1.854 H13 VKX 28 VKX H14 H14 H 0 1 N N N 31.602 14.553 42.599 -3.405 1.551 -1.323 H14 VKX 29 VKX H15 H15 H 0 1 N N N 29.424 14.532 43.792 -2.637 1.415 0.891 H15 VKX 30 VKX H16 H16 H 0 1 N N N 29.839 13.048 42.869 -2.247 3.076 0.414 H16 VKX 31 VKX H17 H17 H 0 1 N N N 28.615 14.636 36.122 4.835 -0.401 -0.833 H17 VKX 32 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VKX C C5 DOUB Y N 1 VKX C C1 SING Y N 2 VKX C5 C4 SING Y N 3 VKX C1 C2 DOUB Y N 4 VKX C4 C3 DOUB Y N 5 VKX C2 C3 SING Y N 6 VKX C3 C6 SING N N 7 VKX O C9 DOUB N N 8 VKX C6 C7 SING N N 9 VKX C6 N SING N N 10 VKX C6 N1 SING N N 11 VKX C8 C9 SING N N 12 VKX C8 C7 SING N N 13 VKX C9 N SING N N 14 VKX N C10 SING N N 15 VKX N1 C12 SING N N 16 VKX C11 C10 SING N N 17 VKX C11 C12 SING N N 18 VKX N1 H1 SING N N 19 VKX C7 H3 SING N N 20 VKX C7 H4 SING N N 21 VKX C8 H5 SING N N 22 VKX C8 H6 SING N N 23 VKX C1 H7 SING N N 24 VKX C5 H8 SING N N 25 VKX C4 H9 SING N N 26 VKX C2 H10 SING N N 27 VKX C10 H11 SING N N 28 VKX C10 H12 SING N N 29 VKX C11 H13 SING N N 30 VKX C11 H14 SING N N 31 VKX C12 H15 SING N N 32 VKX C12 H16 SING N N 33 VKX C H17 SING N N 34 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VKX SMILES ACDLabs 12.01 "O=C1CCC2(NCCCN12)c1ccccc1" VKX InChI InChI 1.06 "InChI=1S/C13H16N2O/c16-12-7-8-13(11-5-2-1-3-6-11)14-9-4-10-15(12)13/h1-3,5-6,14H,4,7-10H2/t13-/m0/s1" VKX InChIKey InChI 1.06 VXKUXARBYXJFRT-ZDUSSCGKSA-N VKX SMILES_CANONICAL CACTVS 3.385 "O=C1CC[C@@]2(NCCCN12)c3ccccc3" VKX SMILES CACTVS 3.385 "O=C1CC[C]2(NCCCN12)c3ccccc3" VKX SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)[C@]23CCC(=O)N2CCCN3" VKX SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)C23CCC(=O)N2CCCN3" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier VKX "SYSTEMATIC NAME" ACDLabs 12.01 "(5R,8aS)-8a-phenylhexahydropyrrolo[1,2-a]pyrimidin-6(2H)-one" VKX "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(8~{a}~{S})-8~{a}-phenyl-1,2,3,4,7,8-hexahydropyrrolo[1,2-a]pyrimidin-6-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VKX "Create component" 2022-08-29 RCSB VKX "Initial release" 2022-11-02 RCSB #