data_VL1 # _chem_comp.id VL1 _chem_comp.name Gedatolisib _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C32 H41 N9 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "N-{4-[4,6-bis(morpholin-4-yl)-1,3,5-triazin-2-yl]phenyl}-N'-{4-[4-(dimethylamino)piperidine-1-carbonyl]phenyl}urea" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-08-26 _chem_comp.pdbx_modified_date 2021-03-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 615.726 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VL1 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7JWE _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VL1 C10 C1 C 0 1 N N N 36.586 -3.755 17.548 -7.774 1.426 0.227 C10 VL1 1 VL1 C13 C2 C 0 1 Y N N 35.105 -5.287 18.945 -6.301 2.703 -1.322 C13 VL1 2 VL1 C15 C3 C 0 1 Y N N 32.994 -4.524 19.886 -3.970 2.987 -0.835 C15 VL1 3 VL1 C17 C4 C 0 1 Y N N 34.332 -3.020 18.567 -5.348 1.743 0.684 C17 VL1 4 VL1 C22 C5 C 0 1 Y N N 28.043 -4.267 21.367 0.764 2.598 -0.908 C22 VL1 5 VL1 C24 C6 C 0 1 Y N N 26.485 -2.498 20.892 1.860 0.468 -0.798 C24 VL1 6 VL1 C26 C7 C 0 1 Y N N 25.707 -4.519 22.005 3.103 2.497 -0.385 C26 VL1 7 VL1 C28 C8 C 0 1 Y N N 24.007 -2.682 21.510 4.285 0.307 -0.247 C28 VL1 8 VL1 C01 C9 C 0 1 N N N 39.875 1.474 19.414 -8.401 -3.961 -0.704 C01 VL1 9 VL1 C03 C10 C 0 1 N N N 39.270 2.217 17.188 -7.405 -4.824 1.327 C03 VL1 10 VL1 C04 C11 C 0 1 N N N 38.368 0.109 17.957 -8.186 -2.534 1.240 C04 VL1 11 VL1 C05 C12 C 0 1 N N N 39.432 -0.743 17.718 -6.907 -1.974 0.612 C05 VL1 12 VL1 C06 C13 C 0 1 N N N 39.025 -2.234 17.492 -6.663 -0.556 1.138 C06 VL1 13 VL1 C08 C14 C 0 1 N N N 37.704 -1.814 19.311 -9.161 -0.238 1.368 C08 VL1 14 VL1 C09 C15 C 0 1 N N N 37.456 -0.340 18.910 -9.376 -1.660 0.840 C09 VL1 15 VL1 C12 C16 C 0 1 Y N N 35.287 -4.028 18.380 -6.452 1.966 -0.144 C12 VL1 16 VL1 C14 C17 C 0 1 Y N N 33.948 -5.530 19.695 -5.066 3.206 -1.664 C14 VL1 17 VL1 C16 C18 C 0 1 Y N N 33.173 -3.264 19.319 -4.118 2.259 0.342 C16 VL1 18 VL1 C19 C19 C 0 1 N N N 30.501 -4.263 20.508 -1.602 2.810 -0.881 C19 VL1 19 VL1 C23 C20 C 0 1 Y N N 27.802 -2.997 20.849 0.720 1.212 -1.010 C23 VL1 20 VL1 C25 C21 C 0 1 Y N N 25.451 -3.254 21.462 3.059 1.106 -0.481 C25 VL1 21 VL1 C27 C22 C 0 1 Y N N 27.018 -5.020 21.965 1.960 3.237 -0.597 C27 VL1 22 VL1 C30 C23 C 0 1 Y N N 22.477 -1.007 21.046 5.345 -1.735 -0.138 C30 VL1 23 VL1 C32 C24 C 0 1 Y N N 21.810 -2.915 22.168 6.528 0.199 0.266 C32 VL1 24 VL1 C35 C25 C 0 1 N N N 20.954 -5.121 23.171 8.264 0.320 1.844 C35 VL1 25 VL1 C36 C26 C 0 1 N N N 20.304 -5.446 24.514 9.606 1.003 2.123 C36 VL1 26 VL1 C38 C27 C 0 1 N N N 18.794 -3.699 24.280 8.883 2.952 0.933 C38 VL1 27 VL1 C39 C28 C 0 1 N N N 19.379 -3.323 22.917 7.534 2.289 0.641 C39 VL1 28 VL1 C41 C29 C 0 1 N N N 22.980 1.472 20.864 6.281 -3.593 -1.230 C41 VL1 29 VL1 C42 C30 C 0 1 N N N 22.252 2.779 21.202 6.244 -5.123 -1.271 C42 VL1 30 VL1 C44 C31 C 0 1 N N N 20.358 1.467 21.670 3.936 -5.102 -0.631 C44 VL1 31 VL1 C45 C32 C 0 1 N N N 20.763 0.754 20.388 3.950 -3.572 -0.583 C45 VL1 32 VL1 N02 N1 N 0 1 N N N 38.815 1.488 18.381 -8.404 -3.906 0.764 N02 VL1 33 VL1 N07 N2 N 0 1 N N N 37.613 -2.758 18.037 -7.863 0.254 0.886 N07 VL1 34 VL1 N18 N3 N 0 1 N N N 31.810 -4.895 20.680 -2.721 3.498 -1.184 N18 VL1 35 VL1 N21 N4 N 0 1 N N N 29.417 -4.797 21.370 -0.392 3.351 -1.123 N21 VL1 36 VL1 N29 N5 N 0 1 Y N N 23.726 -1.483 20.983 4.244 -1.019 -0.343 N29 VL1 37 VL1 N31 N6 N 0 1 Y N N 21.517 -1.721 21.640 6.487 -1.125 0.164 N31 VL1 38 VL1 N33 N7 N 0 1 Y N N 23.057 -3.391 22.111 5.428 0.916 0.056 N33 VL1 39 VL1 N34 N8 N 0 1 N N N 20.783 -3.712 22.826 7.714 0.831 0.580 N34 VL1 40 VL1 N40 N9 N 0 1 N N N 22.161 0.322 20.451 5.304 -3.110 -0.243 N40 VL1 41 VL1 O11 O1 O 0 1 N N N 36.769 -4.347 16.539 -8.784 2.040 -0.060 O11 VL1 42 VL1 O20 O2 O 0 1 N N N 30.330 -3.401 19.721 -1.686 1.701 -0.389 O20 VL1 43 VL1 O37 O3 O 0 1 N N N 18.982 -5.038 24.590 9.417 2.421 2.148 O37 VL1 44 VL1 O43 O4 O 0 1 N N N 21.003 2.687 21.813 4.914 -5.554 -1.572 O43 VL1 45 VL1 H131 H1 H 0 0 N N N 35.843 -6.063 18.807 -7.151 2.873 -1.965 H131 VL1 46 VL1 H171 H2 H 0 0 N N N 34.490 -2.046 18.128 -5.462 1.179 1.597 H171 VL1 47 VL1 H241 H3 H 0 0 N N N 26.270 -1.523 20.481 1.824 -0.609 -0.873 H241 VL1 48 VL1 H261 H4 H 0 0 N N N 24.910 -5.099 22.447 4.030 2.993 -0.140 H261 VL1 49 VL1 H012 H5 H 0 0 N N N 39.519 0.925 20.298 -8.565 -4.988 -1.030 H012 VL1 50 VL1 H013 H6 H 0 0 N N N 40.772 0.979 19.012 -9.196 -3.325 -1.093 H013 VL1 51 VL1 H011 H7 H 0 0 N N N 40.123 2.507 19.699 -7.440 -3.610 -1.079 H011 VL1 52 VL1 H032 H8 H 0 0 N N N 39.600 3.226 17.478 -7.477 -4.816 2.414 H032 VL1 53 VL1 H033 H9 H 0 0 N N N 40.108 1.676 16.725 -7.590 -5.833 0.958 H033 VL1 54 VL1 H031 H10 H 0 0 N N N 38.442 2.295 16.468 -6.408 -4.505 1.026 H031 VL1 55 VL1 H041 H11 H 0 0 N N N 37.824 0.240 17.010 -8.086 -2.537 2.325 H041 VL1 56 VL1 H052 H12 H 0 0 N N N 40.110 -0.699 18.583 -6.062 -2.611 0.878 H052 VL1 57 VL1 H051 H13 H 0 0 N N N 39.960 -0.390 16.820 -7.015 -1.947 -0.472 H051 VL1 58 VL1 H062 H14 H 0 0 N N N 39.032 -2.406 16.406 -6.464 -0.592 2.209 H062 VL1 59 VL1 H061 H15 H 0 0 N N N 39.801 -2.853 17.967 -5.810 -0.116 0.621 H061 VL1 60 VL1 H082 H16 H 0 0 N N N 36.945 -2.122 20.045 -9.956 0.412 1.003 H082 VL1 61 VL1 H081 H17 H 0 0 N N N 38.705 -1.904 19.758 -9.169 -0.248 2.458 H081 VL1 62 VL1 H091 H18 H 0 0 N N N 37.543 0.290 19.807 -9.462 -1.635 -0.246 H091 VL1 63 VL1 H092 H19 H 0 0 N N N 36.440 -0.252 18.497 -10.290 -2.072 1.268 H092 VL1 64 VL1 H141 H20 H 0 0 N N N 33.790 -6.505 20.131 -4.948 3.771 -2.576 H141 VL1 65 VL1 H161 H21 H 0 0 N N N 32.433 -2.489 19.456 -3.267 2.099 0.987 H161 VL1 66 VL1 H231 H22 H 0 0 N N N 28.604 -2.410 20.425 -0.209 0.719 -1.255 H231 VL1 67 VL1 H271 H23 H 0 0 N N N 27.239 -5.986 22.395 1.993 4.314 -0.523 H271 VL1 68 VL1 H352 H24 H 0 0 N N N 20.490 -5.740 22.389 8.413 -0.757 1.767 H352 VL1 69 VL1 H351 H25 H 0 0 N N N 22.029 -5.348 23.229 7.571 0.535 2.657 H351 VL1 70 VL1 H362 H26 H 0 0 N N N 20.344 -6.534 24.668 9.991 0.670 3.087 H362 VL1 71 VL1 H361 H27 H 0 0 N N N 20.872 -4.942 25.309 10.316 0.744 1.338 H361 VL1 72 VL1 H382 H28 H 0 0 N N N 19.281 -3.087 25.053 9.573 2.750 0.113 H382 VL1 73 VL1 H381 H29 H 0 0 N N N 17.715 -3.488 24.271 8.746 4.028 1.035 H381 VL1 74 VL1 H392 H30 H 0 0 N N N 19.297 -2.235 22.778 6.829 2.536 1.435 H392 VL1 75 VL1 H391 H31 H 0 0 N N N 18.811 -3.837 22.127 7.150 2.649 -0.313 H391 VL1 76 VL1 H411 H32 H 0 0 N N N 23.545 1.169 21.758 7.280 -3.261 -0.945 H411 VL1 77 VL1 H412 H33 H 0 0 N N N 23.680 1.688 20.044 6.033 -3.196 -2.214 H412 VL1 78 VL1 H421 H34 H 0 0 N N N 22.905 3.354 21.875 6.926 -5.483 -2.041 H421 VL1 79 VL1 H422 H35 H 0 0 N N N 22.117 3.332 20.261 6.545 -5.521 -0.302 H422 VL1 80 VL1 H441 H36 H 0 0 N N N 19.272 1.640 21.652 4.170 -5.500 0.357 H441 VL1 81 VL1 H442 H37 H 0 0 N N N 20.614 0.828 22.528 2.949 -5.448 -0.938 H442 VL1 82 VL1 H451 H38 H 0 0 N N N 20.636 1.441 19.538 3.663 -3.175 -1.557 H451 VL1 83 VL1 H452 H39 H 0 0 N N N 20.120 -0.127 20.247 3.246 -3.225 0.174 H452 VL1 84 VL1 H181 H41 H 0 0 N N N 31.905 -5.613 21.370 -2.657 4.349 -1.645 H181 VL1 85 VL1 H211 H42 H 0 0 N N N 29.631 -5.556 21.985 -0.324 4.262 -1.447 H211 VL1 86 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VL1 O11 C10 DOUB N N 1 VL1 C03 N02 SING N N 2 VL1 C06 C05 SING N N 3 VL1 C06 N07 SING N N 4 VL1 C10 N07 SING N N 5 VL1 C10 C12 SING N N 6 VL1 C05 C04 SING N N 7 VL1 C04 N02 SING N N 8 VL1 C04 C09 SING N N 9 VL1 N07 C08 SING N N 10 VL1 C12 C17 DOUB Y N 11 VL1 C12 C13 SING Y N 12 VL1 N02 C01 SING N N 13 VL1 C17 C16 SING Y N 14 VL1 C09 C08 SING N N 15 VL1 C13 C14 DOUB Y N 16 VL1 C16 C15 DOUB Y N 17 VL1 C14 C15 SING Y N 18 VL1 O20 C19 DOUB N N 19 VL1 C15 N18 SING N N 20 VL1 C45 N40 SING N N 21 VL1 C45 C44 SING N N 22 VL1 N40 C41 SING N N 23 VL1 N40 C30 SING N N 24 VL1 C19 N18 SING N N 25 VL1 C19 N21 SING N N 26 VL1 C23 C24 DOUB Y N 27 VL1 C23 C22 SING Y N 28 VL1 C41 C42 SING N N 29 VL1 C24 C25 SING Y N 30 VL1 N29 C30 DOUB Y N 31 VL1 N29 C28 SING Y N 32 VL1 C30 N31 SING Y N 33 VL1 C42 O43 SING N N 34 VL1 C22 N21 SING N N 35 VL1 C22 C27 DOUB Y N 36 VL1 C25 C28 SING N N 37 VL1 C25 C26 DOUB Y N 38 VL1 C28 N33 DOUB Y N 39 VL1 N31 C32 DOUB Y N 40 VL1 C44 O43 SING N N 41 VL1 C27 C26 SING Y N 42 VL1 N33 C32 SING Y N 43 VL1 C32 N34 SING N N 44 VL1 N34 C39 SING N N 45 VL1 N34 C35 SING N N 46 VL1 C39 C38 SING N N 47 VL1 C35 C36 SING N N 48 VL1 C38 O37 SING N N 49 VL1 C36 O37 SING N N 50 VL1 C13 H131 SING N N 51 VL1 C17 H171 SING N N 52 VL1 C24 H241 SING N N 53 VL1 C26 H261 SING N N 54 VL1 C01 H012 SING N N 55 VL1 C01 H013 SING N N 56 VL1 C01 H011 SING N N 57 VL1 C03 H032 SING N N 58 VL1 C03 H033 SING N N 59 VL1 C03 H031 SING N N 60 VL1 C04 H041 SING N N 61 VL1 C05 H052 SING N N 62 VL1 C05 H051 SING N N 63 VL1 C06 H062 SING N N 64 VL1 C06 H061 SING N N 65 VL1 C08 H082 SING N N 66 VL1 C08 H081 SING N N 67 VL1 C09 H091 SING N N 68 VL1 C09 H092 SING N N 69 VL1 C14 H141 SING N N 70 VL1 C16 H161 SING N N 71 VL1 C23 H231 SING N N 72 VL1 C27 H271 SING N N 73 VL1 C35 H352 SING N N 74 VL1 C35 H351 SING N N 75 VL1 C36 H362 SING N N 76 VL1 C36 H361 SING N N 77 VL1 C38 H382 SING N N 78 VL1 C38 H381 SING N N 79 VL1 C39 H392 SING N N 80 VL1 C39 H391 SING N N 81 VL1 C41 H411 SING N N 82 VL1 C41 H412 SING N N 83 VL1 C42 H421 SING N N 84 VL1 C42 H422 SING N N 85 VL1 C44 H441 SING N N 86 VL1 C44 H442 SING N N 87 VL1 C45 H451 SING N N 88 VL1 C45 H452 SING N N 89 VL1 N18 H181 SING N N 90 VL1 N21 H211 SING N N 91 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VL1 SMILES ACDLabs 12.01 "C(N1CCC(N(C)C)CC1)(c6ccc(NC(Nc2ccc(cc2)c4nc(N3CCOCC3)nc(n4)N5CCOCC5)=O)cc6)=O" VL1 InChI InChI 1.03 "InChI=1S/C32H41N9O4/c1-38(2)27-11-13-39(14-12-27)29(42)24-5-9-26(10-6-24)34-32(43)33-25-7-3-23(4-8-25)28-35-30(40-15-19-44-20-16-40)37-31(36-28)41-17-21-45-22-18-41/h3-10,27H,11-22H2,1-2H3,(H2,33,34,43)" VL1 InChIKey InChI 1.03 DWZAEMINVBZMHQ-UHFFFAOYSA-N VL1 SMILES_CANONICAL CACTVS 3.385 "CN(C)C1CCN(CC1)C(=O)c2ccc(NC(=O)Nc3ccc(cc3)c4nc(nc(n4)N5CCOCC5)N6CCOCC6)cc2" VL1 SMILES CACTVS 3.385 "CN(C)C1CCN(CC1)C(=O)c2ccc(NC(=O)Nc3ccc(cc3)c4nc(nc(n4)N5CCOCC5)N6CCOCC6)cc2" VL1 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN(C)C1CCN(CC1)C(=O)c2ccc(cc2)NC(=O)Nc3ccc(cc3)c4nc(nc(n4)N5CCOCC5)N6CCOCC6" VL1 SMILES "OpenEye OEToolkits" 2.0.7 "CN(C)C1CCN(CC1)C(=O)c2ccc(cc2)NC(=O)Nc3ccc(cc3)c4nc(nc(n4)N5CCOCC5)N6CCOCC6" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier VL1 "SYSTEMATIC NAME" ACDLabs 12.01 "N-{4-[4,6-bis(morpholin-4-yl)-1,3,5-triazin-2-yl]phenyl}-N'-{4-[4-(dimethylamino)piperidine-1-carbonyl]phenyl}urea" VL1 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "1-[4-[4-(dimethylamino)piperidin-1-yl]carbonylphenyl]-3-[4-(4,6-dimorpholin-4-yl-1,3,5-triazin-2-yl)phenyl]urea" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VL1 "Create component" 2020-08-26 RCSB VL1 "Initial release" 2021-03-17 RCSB VL1 "Modify synonyms" 2021-03-13 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id VL1 _pdbx_chem_comp_synonyms.name "N-{4-[4,6-bis(morpholin-4-yl)-1,3,5-triazin-2-yl]phenyl}-N'-{4-[4-(dimethylamino)piperidine-1-carbonyl]phenyl}urea" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? ##