data_VL2 # _chem_comp.id VL2 _chem_comp.name "4-[2-(9-chloranyl-2',3',4',5',6'-pentamethyl-4-nitro-7-oxidanylidene-spiro[1$l^{4},8-diaza-9$l^{8}-iridabicyclo[4.3.0]nona-1,3,5-triene-9,1'-1$l^{8}-iridapentacyclo[2.2.0.0^{1,3}.0^{1,5}.0^{2,6}]hexane]-8-yl)ethyl]benzenesulfonamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H28 Cl Ir N4 O5 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 1 _chem_comp.pdbx_initial_date 2021-05-26 _chem_comp.pdbx_modified_date 2021-11-26 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 712.238 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VL2 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7ONP _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VL2 O1 O1 O 0 1 N N N 15.685 0.181 18.181 15.685 0.181 18.181 O1 VL2 1 VL2 C13 C1 C 0 1 N N N 19.993 7.261 12.329 19.993 7.261 12.329 C13 VL2 2 VL2 C14 C2 C 0 1 N N N 20.469 7.695 10.976 20.469 7.695 10.976 C14 VL2 3 VL2 C21 C3 C 0 1 N N N 21.502 6.996 10.073 21.502 6.996 10.073 C21 VL2 4 VL2 C15 C4 C 0 1 N N N 19.812 8.977 10.675 19.812 8.977 10.675 C15 VL2 5 VL2 C20 C5 C 0 1 N N N 20.036 9.770 9.359 20.036 9.770 9.359 C20 VL2 6 VL2 C16 C6 C 0 1 N N N 18.926 9.362 11.812 18.926 9.362 11.812 C16 VL2 7 VL2 C19 C7 C 0 1 N N N 18.032 10.588 11.829 18.032 10.588 11.829 C19 VL2 8 VL2 C22 C8 C 0 1 N N N 20.511 6.006 12.973 20.511 6.006 12.973 C22 VL2 9 VL2 C17 C9 C 0 1 N N N 19.002 8.254 12.830 19.002 8.254 12.830 C17 VL2 10 VL2 C18 C10 C 0 1 N N N 18.315 8.249 14.202 18.315 8.249 14.202 C18 VL2 11 VL2 IR1 IR1 IR 0 0 N N N 18.348 7.478 11.071 18.348 7.478 11.071 IR1 VL2 12 VL2 CL1 CL1 CL 0 0 N N N 18.497 5.851 9.351 18.497 5.851 9.351 CL1 VL2 13 VL2 N1 N1 N 1 1 Y N N 16.741 8.012 10.075 16.741 8.012 10.075 N1 VL2 14 VL2 C1 C11 C 0 1 Y N N 16.634 8.974 9.178 16.634 8.974 9.178 C1 VL2 15 VL2 C2 C12 C 0 1 Y N N 15.499 9.359 8.507 15.499 9.359 8.507 C2 VL2 16 VL2 C5 C13 C 0 1 Y N N 15.472 7.307 10.265 15.472 7.307 10.265 C5 VL2 17 VL2 N4 N2 N 1 1 N N N 13.058 9.010 8.000 13.058 9.010 8.000 N4 VL2 18 VL2 O4 O2 O -1 1 N N N 12.894 10.096 7.449 12.894 10.096 7.449 O4 VL2 19 VL2 O5 O3 O 0 1 N N N 12.103 7.900 8.114 12.103 7.900 8.114 O5 VL2 20 VL2 C3 C14 C 0 1 Y N N 14.327 8.703 8.699 14.327 8.703 8.699 C3 VL2 21 VL2 C4 C15 C 0 1 Y N N 14.233 7.674 9.538 14.233 7.674 9.538 C4 VL2 22 VL2 S1 S1 S 0 1 N N N 15.135 0.028 16.833 15.135 0.028 16.833 S1 VL2 23 VL2 C10 C16 C 0 1 Y N N 15.582 1.391 15.989 15.582 1.391 15.989 C10 VL2 24 VL2 O2 O4 O 0 1 N N N 13.727 0.008 16.769 13.727 0.008 16.769 O2 VL2 25 VL2 C11 C17 C 0 1 Y N N 14.715 2.523 15.740 14.715 2.523 15.740 C11 VL2 26 VL2 C12 C18 C 0 1 Y N N 15.156 3.627 15.099 15.156 3.627 15.099 C12 VL2 27 VL2 C9 C19 C 0 1 Y N N 16.967 1.564 15.515 16.967 1.564 15.515 C9 VL2 28 VL2 C8 C20 C 0 1 Y N N 17.322 2.720 14.819 17.322 2.720 14.819 C8 VL2 29 VL2 C23 C21 C 0 1 N N N 16.970 4.845 12.533 16.970 4.845 12.533 C23 VL2 30 VL2 C24 C22 C 0 1 N N N 16.844 4.930 13.908 16.844 4.930 13.908 C24 VL2 31 VL2 N3 N3 N 0 1 N N N 15.724 -1.160 16.109 15.724 -1.160 16.109 N3 VL2 32 VL2 C7 C23 C 0 1 Y N N 16.432 3.745 14.601 16.432 3.745 14.601 C7 VL2 33 VL2 N2 N4 N 0 1 N N N 16.902 6.120 11.737 16.902 6.120 11.737 N2 VL2 34 VL2 C6 C24 C 0 1 N N N 15.629 6.248 11.239 15.629 6.248 11.239 C6 VL2 35 VL2 O3 O5 O 0 1 N N N 14.704 5.533 11.579 14.704 5.533 11.579 O3 VL2 36 VL2 H1 H1 H 0 1 N N N 21.627 7.572 9.144 21.627 7.572 9.144 H1 VL2 37 VL2 H2 H2 H 0 1 N N N 22.466 6.934 10.599 22.466 6.934 10.599 H2 VL2 38 VL2 H3 H3 H 0 1 N N N 21.151 5.982 9.831 21.151 5.982 9.831 H3 VL2 39 VL2 H4 H4 H 0 1 N N N 19.433 10.690 9.378 19.434 10.690 9.378 H4 VL2 40 VL2 H5 H5 H 0 1 N N N 21.100 10.031 9.265 21.101 10.031 9.265 H5 VL2 41 VL2 H6 H6 H 0 1 N N N 19.733 9.151 8.502 19.733 9.151 8.502 H6 VL2 42 VL2 H7 H7 H 0 1 N N N 17.489 10.633 12.784 17.489 10.633 12.784 H7 VL2 43 VL2 H8 H8 H 0 1 N N N 18.648 11.492 11.715 18.648 11.492 11.715 H8 VL2 44 VL2 H9 H9 H 0 1 N N N 17.312 10.528 11.000 17.312 10.528 11.000 H9 VL2 45 VL2 H10 H10 H 0 1 N N N 20.035 5.874 13.956 20.035 5.874 13.956 H10 VL2 46 VL2 H11 H11 H 0 1 N N N 20.277 5.142 12.333 20.277 5.142 12.333 H11 VL2 47 VL2 H12 H12 H 0 1 N N N 21.601 6.083 13.101 21.601 6.083 13.101 H12 VL2 48 VL2 H13 H13 H 0 1 N N N 17.636 9.111 14.276 17.636 9.111 14.276 H13 VL2 49 VL2 H14 H14 H 0 1 N N N 17.740 7.319 14.321 17.740 7.319 14.321 H14 VL2 50 VL2 H15 H15 H 0 1 N N N 19.076 8.313 14.993 19.076 8.313 14.993 H15 VL2 51 VL2 H16 H16 H 0 1 N N N 17.538 9.518 8.946 17.538 9.518 8.946 H16 VL2 52 VL2 H17 H17 H 0 1 N N N 15.540 10.192 7.820 15.540 10.191 7.820 H17 VL2 53 VL2 H18 H18 H 0 1 N N N 13.307 7.137 9.681 13.307 7.137 9.681 H18 VL2 54 VL2 H19 H19 H 0 1 N N N 13.689 2.484 16.075 13.689 2.484 16.075 H19 VL2 55 VL2 H20 H20 H 0 1 N N N 14.475 4.455 14.972 14.475 4.455 14.972 H20 VL2 56 VL2 H21 H21 H 0 1 N N N 17.705 0.798 15.706 17.705 0.799 15.706 H21 VL2 57 VL2 H22 H22 H 0 1 N N N 18.329 2.813 14.439 18.329 2.813 14.439 H22 VL2 58 VL2 H23 H23 H 0 1 N N N 17.944 4.379 12.322 17.944 4.379 12.322 H23 VL2 59 VL2 H24 H24 H 0 1 N N N 16.164 4.190 12.171 16.164 4.190 12.171 H24 VL2 60 VL2 H25 H25 H 0 1 N N N 17.823 5.227 14.313 17.823 5.227 14.313 H25 VL2 61 VL2 H26 H26 H 0 1 N N N 16.104 5.715 14.125 16.104 5.715 14.125 H26 VL2 62 VL2 H27 H27 H 0 1 N N N 15.322 -1.227 15.196 15.322 -1.227 15.196 H27 VL2 63 VL2 H28 H28 H 0 1 N N N 16.714 -1.045 16.030 16.714 -1.044 16.030 H28 VL2 64 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VL2 O1 S1 DOUB N N 1 VL2 C13 C14 SING N N 2 VL2 C13 C22 SING N N 3 VL2 C13 C17 SING N N 4 VL2 C13 IR1 SING N N 5 VL2 C14 C21 SING N N 6 VL2 C14 C15 SING N N 7 VL2 C14 IR1 SING N N 8 VL2 C15 C20 SING N N 9 VL2 C15 C16 SING N N 10 VL2 C15 IR1 SING N N 11 VL2 C16 C19 SING N N 12 VL2 C16 C17 SING N N 13 VL2 C16 IR1 SING N N 14 VL2 C17 C18 SING N N 15 VL2 C17 IR1 SING N N 16 VL2 IR1 CL1 SING N N 17 VL2 IR1 N1 SING N N 18 VL2 IR1 N2 SING N N 19 VL2 N1 C1 DOUB Y N 20 VL2 N1 C5 SING Y N 21 VL2 C1 C2 SING Y N 22 VL2 C2 C3 DOUB Y N 23 VL2 C5 C4 DOUB Y N 24 VL2 C5 C6 SING N N 25 VL2 N4 O4 SING N N 26 VL2 N4 O5 DOUB N N 27 VL2 N4 C3 SING N N 28 VL2 C3 C4 SING Y N 29 VL2 S1 C10 SING N N 30 VL2 S1 O2 DOUB N N 31 VL2 S1 N3 SING N N 32 VL2 C10 C11 DOUB Y N 33 VL2 C10 C9 SING Y N 34 VL2 C11 C12 SING Y N 35 VL2 C12 C7 DOUB Y N 36 VL2 C9 C8 DOUB Y N 37 VL2 C8 C7 SING Y N 38 VL2 C23 C24 SING N N 39 VL2 C23 N2 SING N N 40 VL2 C24 C7 SING N N 41 VL2 N2 C6 SING N N 42 VL2 C6 O3 DOUB N N 43 VL2 C21 H1 SING N N 44 VL2 C21 H2 SING N N 45 VL2 C21 H3 SING N N 46 VL2 C20 H4 SING N N 47 VL2 C20 H5 SING N N 48 VL2 C20 H6 SING N N 49 VL2 C19 H7 SING N N 50 VL2 C19 H8 SING N N 51 VL2 C19 H9 SING N N 52 VL2 C22 H10 SING N N 53 VL2 C22 H11 SING N N 54 VL2 C22 H12 SING N N 55 VL2 C18 H13 SING N N 56 VL2 C18 H14 SING N N 57 VL2 C18 H15 SING N N 58 VL2 C1 H16 SING N N 59 VL2 C2 H17 SING N N 60 VL2 C4 H18 SING N N 61 VL2 C11 H19 SING N N 62 VL2 C12 H20 SING N N 63 VL2 C9 H21 SING N N 64 VL2 C8 H22 SING N N 65 VL2 C23 H23 SING N N 66 VL2 C23 H24 SING N N 67 VL2 C24 H25 SING N N 68 VL2 C24 H26 SING N N 69 VL2 N3 H27 SING N N 70 VL2 N3 H28 SING N N 71 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VL2 InChI InChI 1.03 "InChI=1S/C14H14N4O5S.C10H15.ClH.Ir/c15-24(22,23)12-3-1-10(2-4-12)5-7-17-14(19)13-9-11(18(20)21)6-8-16-13;1-6-7(2)9(4)10(5)8(6)3;;/h1-4,6,8-9H,5,7H2,(H3,15,17,19,22,23);1-5H3;1H;/q;;;+3/p-2" VL2 InChIKey InChI 1.03 WUOZRCRVUWNRSO-UHFFFAOYSA-L VL2 SMILES_CANONICAL CACTVS 3.385 "CC1C(C)C(C)C(C)C1C.N[S](=O)(=O)c2ccc(CCN3[Ir](Cl)[n+]4ccc(cc4C3=O)[N](=O)=O)cc2" VL2 SMILES CACTVS 3.385 "CC1C(C)C(C)C(C)C1C.N[S](=O)(=O)c2ccc(CCN3[Ir](Cl)[n+]4ccc(cc4C3=O)[N](=O)=O)cc2" VL2 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC12C3([Ir]1456(C2(C4(C53C)C)C)([n+]7ccc(cc7C(=O)N6CCc8ccc(cc8)S(=O)(=O)N)N(=O)=O)Cl)C" VL2 SMILES "OpenEye OEToolkits" 2.0.7 "CC12C3([Ir]1456(C2(C4(C53C)C)C)([n+]7ccc(cc7C(=O)N6CCc8ccc(cc8)S(=O)(=O)N)N(=O)=O)Cl)C" # _pdbx_chem_comp_identifier.comp_id VL2 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "4-[2-(1-chloranyl-2,3,4,5,6-pentamethyl-4'-nitro-7'-oxidanylidene-spiro[1$l^{8}-iridapentacyclo[2.2.0.0^{1,3}.0^{1,5}.0^{2,6}]hexane-1,9'-8-aza-1-azonia-9$l^{8}-iridabicyclo[4.3.0]nona-1,3,5-triene]-8'-yl)ethyl]benzenesulfonamide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VL2 "Create component" 2021-05-26 PDBE VL2 "Initial release" 2021-12-01 RCSB ##