data_VL6
#
_chem_comp.id VL6
_chem_comp.name "(2S,4R)-1-[(2R)-2-[3-[2-(2-methoxyethoxy)ethoxy]-1,2-oxazol-5-yl]-3-methyl-butanoyl]-N-[(1S)-1-[4-(4-methyl-1,3-thiazol-5-yl)phenyl]ethyl]-4-oxidanyl-pyrrolidine-2-carboxamide"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C30 H40 N4 O7 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2023-09-13
_chem_comp.pdbx_modified_date 2024-01-12
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 600.726
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code VL6
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 8QJS
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBE
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
VL6 C4 C1 C 0 1 N N N N N N 58.144 -80.759 -5.068 -7.863 0.092 1.068 C4 VL6 1
VL6 C14 C2 C 0 1 N N R N N N 55.877 -74.490 1.465 -0.919 -1.304 -1.256 C14 VL6 2
VL6 C5 C3 C 0 1 Y N N N N N 56.668 -79.335 -3.772 -5.869 1.023 0.172 C5 VL6 3
VL6 C6 C4 C 0 1 Y N N N N N 55.566 -77.763 -2.726 -3.960 2.057 -0.066 C6 VL6 4
VL6 C11 C5 C 0 1 N N N N N N 53.153 -76.785 -4.022 -3.966 4.788 -0.934 C11 VL6 5
VL6 C7 C6 C 0 1 Y N N N N N 55.529 -79.075 -2.987 -4.884 1.379 -0.785 C7 VL6 6
VL6 C8 C7 C 0 1 N N R N N N 54.687 -76.868 -1.935 -2.686 2.671 -0.586 C8 VL6 7
VL6 C9 C8 C 0 1 N N N N N N 53.270 -77.063 -2.533 -2.702 4.178 -0.325 C9 VL6 8
VL6 C10 C9 C 0 1 N N N N N N 52.237 -76.258 -1.757 -1.468 4.819 -0.963 C10 VL6 9
VL6 C12 C10 C 0 1 N N N N N N 54.684 -77.265 -0.467 -1.506 2.052 0.118 C12 VL6 10
VL6 C13 C11 C 0 1 N N N N N N 55.018 -74.885 0.279 -1.466 0.125 -1.493 C13 VL6 11
VL6 N1 N1 N 0 1 N N N N N N 54.880 -76.322 0.469 -0.955 0.918 -0.360 N1 VL6 12
VL6 N2 N2 N 0 1 N N N N N N 53.738 -78.184 3.328 2.654 0.800 0.443 N2 VL6 13
VL6 C3 C12 C 0 1 N N N N N N 58.592 -82.189 -4.976 -9.094 -0.697 0.619 C3 VL6 14
VL6 N3 N3 N 0 1 Y N N N N N 50.523 -74.669 10.641 10.358 -2.518 -0.830 N3 VL6 15
VL6 O6 O1 O 0 1 N N N N N N 52.588 -76.754 2.014 1.288 2.296 -0.462 O6 VL6 16
VL6 C17 C13 C 0 1 N N N N N N 53.654 -77.208 2.422 1.435 1.195 0.025 C17 VL6 17
VL6 C18 C14 C 0 1 N N S N N N 52.567 -78.754 3.995 3.802 1.702 0.309 C18 VL6 18
VL6 C20 C15 C 0 1 Y N N N N N 52.237 -77.924 5.220 5.071 0.893 0.248 C20 VL6 19
VL6 C25 C16 C 0 1 Y N N N N N 53.253 -77.414 6.017 5.221 -0.218 1.059 C25 VL6 20
VL6 C24 C17 C 0 1 Y N N N N N 52.970 -76.628 7.119 6.381 -0.962 1.008 C24 VL6 21
VL6 C23 C18 C 0 1 Y N N N N N 51.654 -76.318 7.451 7.405 -0.593 0.135 C23 VL6 22
VL6 C26 C19 C 0 1 Y N N N N N 51.349 -75.470 8.623 8.652 -1.387 0.074 C26 VL6 23
VL6 S S1 S 0 1 Y N N N N N 52.022 -73.865 8.716 9.610 -1.921 1.453 S VL6 24
VL6 C29 C20 C 0 1 Y N N N N N 51.219 -73.657 10.222 10.720 -2.682 0.399 C29 VL6 25
VL6 C27 C21 C 0 1 Y N N N N N 50.573 -75.709 9.731 9.258 -1.831 -1.047 C27 VL6 26
VL6 C28 C22 C 0 1 N N N N N N 49.824 -76.962 10.049 8.721 -1.564 -2.429 C28 VL6 27
VL6 C22 C23 C 0 1 Y N N N N N 50.634 -76.802 6.635 7.248 0.528 -0.681 C22 VL6 28
VL6 C21 C24 C 0 1 Y N N N N N 50.927 -77.583 5.529 6.081 1.261 -0.624 C21 VL6 29
VL6 C19 C25 C 0 1 N N N N N N 52.860 -80.207 4.353 3.854 2.643 1.515 C19 VL6 30
VL6 C16 C26 C 0 1 N N S N N N 54.985 -76.700 1.880 0.255 0.267 0.162 C16 VL6 31
VL6 C15 C27 C 0 1 N N N N N N 55.361 -75.386 2.580 0.489 -1.007 -0.676 C15 VL6 32
VL6 O5 O2 O 0 1 N N N N N N 57.241 -74.806 1.210 -1.724 -2.011 -0.310 O5 VL6 33
VL6 O4 O3 O 0 1 N N N N N N 54.500 -78.432 -0.167 -1.052 2.573 1.114 O4 VL6 34
VL6 O3 O4 O 0 1 Y N N N N N 56.670 -77.219 -3.281 -4.400 2.076 1.201 O3 VL6 35
VL6 N N4 N 0 1 Y N N N N N 57.376 -78.247 -3.970 -5.457 1.500 1.316 N VL6 36
VL6 O2 O5 O 0 1 N N N N N N 56.958 -80.570 -4.244 -7.014 0.330 -0.056 O2 VL6 37
VL6 O1 O6 O 0 1 N N N N N N 59.439 -82.387 -3.845 -8.692 -1.992 0.168 O1 VL6 38
VL6 C2 C28 C 0 1 N N N N N N 58.900 -83.310 -2.894 -9.773 -2.815 -0.276 C2 VL6 39
VL6 C1 C29 C 0 1 N N N N N N 59.985 -83.911 -2.045 -9.228 -4.170 -0.733 C1 VL6 40
VL6 O O7 O 0 1 N N N N N N 60.952 -84.634 -2.802 -8.664 -4.858 0.386 O VL6 41
VL6 C C30 C 0 1 N N N N N N 61.956 -85.244 -2.006 -8.124 -6.142 0.067 C VL6 42
VL6 H13 H1 H 0 1 N N N N N N 58.948 -80.099 -4.711 -8.178 1.045 1.494 H13 VL6 43
VL6 H14 H2 H 0 1 N N N N N N 57.907 -80.515 -6.114 -7.319 -0.480 1.820 H14 VL6 44
VL6 H1 H3 H 0 1 N N N N N N 55.734 -73.429 1.717 -0.848 -1.856 -2.193 H1 VL6 45
VL6 H22 H4 H 0 1 N N N N N N 52.115 -76.951 -4.346 -4.845 4.331 -0.480 H22 VL6 46
VL6 H20 H5 H 0 1 N N N N N N 53.437 -75.742 -4.224 -3.978 5.862 -0.748 H20 VL6 47
VL6 H21 H6 H 0 1 N N N N N N 53.822 -77.461 -4.575 -3.976 4.605 -2.009 H21 VL6 48
VL6 H15 H7 H 0 1 N N N N N N 54.782 -79.785 -2.663 -4.874 1.160 -1.843 H15 VL6 49
VL6 H H8 H 0 1 N N N N N N 54.998 -75.819 -2.045 -2.606 2.488 -1.658 H VL6 50
VL6 H16 H9 H 0 1 N N N N N N 53.016 -78.124 -2.389 -2.692 4.361 0.749 H16 VL6 51
VL6 H17 H10 H 0 1 N N N N N N 51.242 -76.413 -2.200 -1.435 5.878 -0.707 H17 VL6 52
VL6 H19 H11 H 0 1 N N N N N N 52.227 -76.589 -0.708 -0.570 4.327 -0.591 H19 VL6 53
VL6 H18 H12 H 0 1 N N N N N N 52.496 -75.190 -1.802 -1.520 4.709 -2.046 H18 VL6 54
VL6 H23 H13 H 0 1 N N N N N N 55.520 -74.654 -0.672 -1.090 0.524 -2.435 H23 VL6 55
VL6 H24 H14 H 0 1 N N N N N N 54.040 -74.382 0.309 -2.556 0.119 -1.493 H24 VL6 56
VL6 H28 H15 H 0 1 N N N N N N 54.642 -78.542 3.562 2.772 -0.080 0.832 H28 VL6 57
VL6 H11 H16 H 0 1 N N N N N N 59.145 -82.452 -5.890 -9.784 -0.802 1.456 H11 VL6 58
VL6 H12 H17 H 0 1 N N N N N N 57.709 -82.838 -4.882 -9.589 -0.167 -0.195 H12 VL6 59
VL6 H3 H18 H 0 1 N N N N N N 51.707 -78.728 3.309 3.699 2.287 -0.604 H3 VL6 60
VL6 H35 H19 H 0 1 N N N N N N 54.281 -77.635 5.772 4.427 -0.502 1.734 H35 VL6 61
VL6 H34 H20 H 0 1 N N N N N N 53.778 -76.251 7.728 6.497 -1.829 1.642 H34 VL6 62
VL6 H39 H21 H 0 1 N N N N N N 51.290 -72.739 10.786 11.599 -3.223 0.715 H39 VL6 63
VL6 H37 H22 H 0 1 N N N N N N 49.319 -76.851 11.020 9.197 -0.672 -2.838 H37 VL6 64
VL6 H36 H23 H 0 1 N N N N N N 49.075 -77.150 9.265 8.933 -2.417 -3.074 H36 VL6 65
VL6 H38 H24 H 0 1 N N N N N N 50.527 -77.807 10.096 7.643 -1.408 -2.376 H38 VL6 66
VL6 H33 H25 H 0 1 N N N N N N 49.606 -76.566 6.867 8.037 0.819 -1.359 H33 VL6 67
VL6 H32 H26 H 0 1 N N N N N N 50.124 -77.932 4.897 5.956 2.126 -1.258 H32 VL6 68
VL6 H30 H27 H 0 1 N N N N N N 51.985 -80.645 4.855 3.957 2.057 2.428 H30 VL6 69
VL6 H31 H28 H 0 1 N N N N N N 53.078 -80.774 3.436 4.707 3.313 1.416 H31 VL6 70
VL6 H29 H29 H 0 1 N N N N N N 53.729 -80.251 5.026 2.935 3.228 1.559 H29 VL6 71
VL6 H2 H30 H 0 1 N N N N N N 55.773 -77.452 2.034 0.112 0.003 1.210 H2 VL6 72
VL6 H26 H31 H 0 1 N N N N N N 56.144 -75.558 3.333 0.827 -1.828 -0.044 H26 VL6 73
VL6 H27 H32 H 0 1 N N N N N N 54.480 -74.937 3.062 1.203 -0.816 -1.477 H27 VL6 74
VL6 H25 H33 H 0 1 N N N N N N 57.770 -74.555 1.958 -2.613 -2.219 -0.627 H25 VL6 75
VL6 H9 H34 H 0 1 N N N N N N 58.378 -84.115 -3.432 -10.476 -2.964 0.543 H9 VL6 76
VL6 H10 H35 H 0 1 N N N N N N 58.188 -82.781 -2.244 -10.281 -2.329 -1.109 H10 VL6 77
VL6 H7 H36 H 0 1 N N N N N N 59.523 -84.598 -1.321 -10.038 -4.764 -1.154 H7 VL6 78
VL6 H8 H37 H 0 1 N N N N N N 60.497 -83.100 -1.506 -8.459 -4.016 -1.490 H8 VL6 79
VL6 H6 H38 H 0 1 N N N N N N 62.663 -85.781 -2.655 -8.911 -6.777 -0.338 H6 VL6 80
VL6 H5 H39 H 0 1 N N N N N N 62.494 -84.470 -1.439 -7.332 -6.029 -0.674 H5 VL6 81
VL6 H4 H40 H 0 1 N N N N N N 61.489 -85.953 -1.307 -7.715 -6.599 0.968 H4 VL6 82
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
VL6 C O SING N N 1
VL6 O C1 SING N N 2
VL6 C1 C2 SING N N 3
VL6 C2 O1 SING N N 4
VL6 O1 C3 SING N N 5
VL6 C3 C4 SING N N 6
VL6 C4 O2 SING N N 7
VL6 O2 C5 SING N N 8
VL6 C5 N DOUB Y N 9
VL6 N O3 SING Y N 10
VL6 O3 C6 SING Y N 11
VL6 C7 C6 DOUB Y N 12
VL6 C5 C7 SING Y N 13
VL6 C6 C8 SING N N 14
VL6 C9 C8 SING N N 15
VL6 C10 C9 SING N N 16
VL6 C11 C9 SING N N 17
VL6 C8 C12 SING N N 18
VL6 O4 C12 DOUB N N 19
VL6 C12 N1 SING N N 20
VL6 N1 C13 SING N N 21
VL6 C13 C14 SING N N 22
VL6 O5 C14 SING N N 23
VL6 C14 C15 SING N N 24
VL6 C15 C16 SING N N 25
VL6 N1 C16 SING N N 26
VL6 C16 C17 SING N N 27
VL6 C17 O6 DOUB N N 28
VL6 N2 C17 SING N N 29
VL6 C18 N2 SING N N 30
VL6 C19 C18 SING N N 31
VL6 C20 C18 SING N N 32
VL6 C20 C21 DOUB Y N 33
VL6 C21 C22 SING Y N 34
VL6 C22 C23 DOUB Y N 35
VL6 C23 C24 SING Y N 36
VL6 C24 C25 DOUB Y N 37
VL6 C25 C20 SING Y N 38
VL6 C26 C23 SING N N 39
VL6 C26 C27 DOUB Y N 40
VL6 C28 C27 SING N N 41
VL6 C27 N3 SING Y N 42
VL6 N3 C29 DOUB Y N 43
VL6 C29 S SING Y N 44
VL6 S C26 SING Y N 45
VL6 C4 H13 SING N N 46
VL6 C4 H14 SING N N 47
VL6 C14 H1 SING N N 48
VL6 C11 H22 SING N N 49
VL6 C11 H20 SING N N 50
VL6 C11 H21 SING N N 51
VL6 C7 H15 SING N N 52
VL6 C8 H SING N N 53
VL6 C9 H16 SING N N 54
VL6 C10 H17 SING N N 55
VL6 C10 H19 SING N N 56
VL6 C10 H18 SING N N 57
VL6 C13 H23 SING N N 58
VL6 C13 H24 SING N N 59
VL6 N2 H28 SING N N 60
VL6 C3 H11 SING N N 61
VL6 C3 H12 SING N N 62
VL6 C18 H3 SING N N 63
VL6 C25 H35 SING N N 64
VL6 C24 H34 SING N N 65
VL6 C29 H39 SING N N 66
VL6 C28 H37 SING N N 67
VL6 C28 H36 SING N N 68
VL6 C28 H38 SING N N 69
VL6 C22 H33 SING N N 70
VL6 C21 H32 SING N N 71
VL6 C19 H30 SING N N 72
VL6 C19 H31 SING N N 73
VL6 C19 H29 SING N N 74
VL6 C16 H2 SING N N 75
VL6 C15 H26 SING N N 76
VL6 C15 H27 SING N N 77
VL6 O5 H25 SING N N 78
VL6 C2 H9 SING N N 79
VL6 C2 H10 SING N N 80
VL6 C1 H7 SING N N 81
VL6 C1 H8 SING N N 82
VL6 C H6 SING N N 83
VL6 C H5 SING N N 84
VL6 C H4 SING N N 85
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
VL6 InChI InChI 1.06 "InChI=1S/C30H40N4O7S/c1-18(2)27(25-15-26(33-41-25)40-13-12-39-11-10-38-5)30(37)34-16-23(35)14-24(34)29(36)32-19(3)21-6-8-22(9-7-21)28-20(4)31-17-42-28/h6-9,15,17-19,23-24,27,35H,10-14,16H2,1-5H3,(H,32,36)"
VL6 InChIKey InChI 1.06 NBSZVQIAZCKTLM-UHFFFAOYSA-N
VL6 SMILES_CANONICAL CACTVS 3.385 "COCCOCCOc1cc(on1)[C@@H](C(C)C)C(=O)N2C[C@H](O)C[C@H]2C(=O)N[C@@H](C)c3ccc(cc3)c4scnc4C"
VL6 SMILES CACTVS 3.385 "COCCOCCOc1cc(on1)[CH](C(C)C)C(=O)N2C[CH](O)C[CH]2C(=O)N[CH](C)c3ccc(cc3)c4scnc4C"
VL6 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1c(scn1)c2ccc(cc2)[C@H](C)NC(=O)[C@@H]3C[C@H](CN3C(=O)[C@@H](c4cc(no4)OCCOCCOC)C(C)C)O"
VL6 SMILES "OpenEye OEToolkits" 2.0.7 "Cc1c(scn1)c2ccc(cc2)C(C)NC(=O)C3CC(CN3C(=O)C(c4cc(no4)OCCOCCOC)C(C)C)O"
#
_pdbx_chem_comp_identifier.comp_id VL6
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier "(2~{S},4~{R})-1-[(2~{R})-2-[3-[2-(2-methoxyethoxy)ethoxy]-1,2-oxazol-5-yl]-3-methyl-butanoyl]-~{N}-[(1~{S})-1-[4-(4-methyl-1,3-thiazol-5-yl)phenyl]ethyl]-4-oxidanyl-pyrrolidine-2-carboxamide"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
VL6 "Create component" 2023-09-13 PDBE
VL6 "Initial release" 2024-01-17 RCSB
#