data_VL7 # _chem_comp.id VL7 _chem_comp.name "1,3-dihydroxypropan-2-yl (9Z,12Z)-octadeca-9,12-dienoate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H38 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-08-26 _chem_comp.pdbx_modified_date 2021-03-05 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 354.524 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VL7 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7JWD _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VL7 C10 C1 C 0 1 N N N 14.606 5.468 -5.772 -3.110 -0.676 -0.372 C10 VL7 1 VL7 C13 C2 C 0 1 N N N 18.220 5.487 -6.438 0.535 -1.647 0.399 C13 VL7 2 VL7 C15 C3 C 0 1 N N N 20.538 4.939 -6.944 2.869 -2.541 0.387 C15 VL7 3 VL7 C17 C4 C 0 1 N N N 21.620 4.549 -9.163 5.081 -2.872 -0.592 C17 VL7 4 VL7 C20 C5 C 0 1 N N N 20.865 7.576 -11.142 7.822 -1.067 0.642 C20 VL7 5 VL7 C21 C6 C 0 1 N N N 20.492 8.652 -10.151 7.711 0.139 -0.255 C21 VL7 6 VL7 C22 C7 C 0 1 N N N 19.116 9.284 -10.429 8.201 1.379 0.495 C22 VL7 7 VL7 C24 C8 C 0 1 N N N 16.680 8.774 -10.855 8.578 3.844 0.334 C24 VL7 8 VL7 O01 O1 O 0 1 N N N 12.017 4.569 -5.275 -5.518 -0.325 -1.424 O01 VL7 9 VL7 C02 C9 C 0 1 N N N 12.291 5.752 -5.359 -5.423 0.217 -0.348 C02 VL7 10 VL7 O03 O2 O 0 1 N N N 11.448 6.679 -4.851 -6.469 0.887 0.160 O03 VL7 11 VL7 C04 C10 C 0 1 N N N 10.207 6.189 -4.340 -7.682 0.920 -0.638 C04 VL7 12 VL7 C05 C11 C 0 1 N N N 9.260 5.909 -5.507 -8.566 -0.274 -0.271 C05 VL7 13 VL7 O06 O3 O 0 1 N N N 7.898 6.119 -5.135 -9.001 -0.145 1.084 O06 VL7 14 VL7 C07 C12 C 0 1 N N N 9.619 7.305 -3.521 -8.439 2.220 -0.362 C07 VL7 15 VL7 O08 O4 O 0 1 N N N 9.311 8.308 -4.440 -8.881 2.234 0.998 O08 VL7 16 VL7 C09 C13 C 0 1 N N N 13.479 6.368 -5.993 -4.131 0.140 0.424 C09 VL7 17 VL7 C11 C14 C 0 1 N N N 15.885 6.074 -6.130 -1.798 -0.754 0.411 C11 VL7 18 VL7 C12 C15 C 0 1 N N N 16.972 5.144 -5.761 -0.776 -1.569 -0.384 C12 VL7 19 VL7 C14 C16 C 0 1 N N N 19.291 4.466 -6.276 1.557 -2.463 -0.397 C14 VL7 20 VL7 C16 C17 C 0 1 N N N 21.005 4.125 -8.070 3.874 -3.345 -0.397 C16 VL7 21 VL7 C18 C18 C 0 1 N N N 21.961 5.961 -9.519 5.505 -1.590 0.076 C18 VL7 22 VL7 C19 C19 C 0 1 N N N 21.483 6.408 -10.877 6.775 -1.825 0.853 C19 VL7 23 VL7 C23 C20 C 0 1 N N N 18.001 8.259 -10.307 8.088 2.603 -0.416 C23 VL7 24 VL7 C25 C21 C 0 1 N N N 15.670 7.679 -10.972 8.466 5.068 -0.577 C25 VL7 25 VL7 H2 H1 H 0 1 N N N 14.461 4.565 -6.382 -3.496 -1.682 -0.535 H2 VL7 26 VL7 H1 H2 H 0 1 N N N 14.633 5.191 -4.708 -2.931 -0.195 -1.334 H1 VL7 27 VL7 H3 H3 H 0 1 N N N 18.585 6.441 -6.030 0.922 -0.641 0.562 H3 VL7 28 VL7 H4 H4 H 0 1 N N N 18.011 5.604 -7.512 0.356 -2.128 1.361 H4 VL7 29 VL7 H5 H5 H 0 1 N N N 21.338 4.962 -6.189 3.255 -1.535 0.550 H5 VL7 30 VL7 H6 H6 H 0 1 N N N 20.356 5.958 -7.316 2.690 -3.022 1.349 H6 VL7 31 VL7 H7 H7 H 0 1 N N N 21.907 3.791 -9.877 5.771 -3.402 -1.232 H7 VL7 32 VL7 H10 H8 H 0 1 N N N 20.609 7.762 -12.175 8.765 -1.306 1.112 H10 VL7 33 VL7 H11 H9 H 0 1 N N N 20.476 8.209 -9.144 8.322 -0.013 -1.145 H11 VL7 34 VL7 H12 H10 H 0 1 N N N 21.255 9.444 -10.191 6.670 0.279 -0.548 H12 VL7 35 VL7 H13 H11 H 0 1 N N N 19.112 9.698 -11.448 7.590 1.531 1.385 H13 VL7 36 VL7 H14 H12 H 0 1 N N N 18.940 10.092 -9.704 9.241 1.239 0.788 H14 VL7 37 VL7 H16 H13 H 0 1 N N N 16.852 9.209 -11.850 7.967 3.995 1.224 H16 VL7 38 VL7 H15 H14 H 0 1 N N N 16.290 9.549 -10.178 9.619 3.704 0.627 H15 VL7 39 VL7 H17 H15 H 0 1 N N N 10.342 5.285 -3.729 -7.422 0.868 -1.695 H17 VL7 40 VL7 H18 H16 H 0 1 N N N 9.386 4.864 -5.828 -9.433 -0.300 -0.931 H18 VL7 41 VL7 H19 H17 H 0 1 N N N 9.511 6.581 -6.341 -7.996 -1.196 -0.384 H19 VL7 42 VL7 H20 H18 H 0 1 N N N 7.335 5.938 -5.878 -9.567 -0.869 1.385 H20 VL7 43 VL7 H22 H19 H 0 1 N N N 10.349 7.669 -2.783 -7.780 3.070 -0.538 H22 VL7 44 VL7 H21 H20 H 0 1 N N N 8.711 6.965 -3.001 -9.302 2.286 -1.024 H21 VL7 45 VL7 H23 H21 H 0 1 N N N 8.932 9.050 -3.984 -9.370 3.031 1.244 H23 VL7 46 VL7 H25 H22 H 0 1 N N N 13.684 7.347 -5.536 -4.310 -0.341 1.385 H25 VL7 47 VL7 H24 H23 H 0 1 N N N 13.306 6.496 -7.072 -3.744 1.146 0.587 H24 VL7 48 VL7 H27 H24 H 0 1 N N N 15.913 6.265 -7.213 -1.411 0.252 0.574 H27 VL7 49 VL7 H26 H25 H 0 1 N N N 16.010 7.022 -5.587 -1.977 -1.234 1.373 H26 VL7 50 VL7 H29 H26 H 0 1 N N N 16.680 4.122 -6.045 -0.597 -1.089 -1.346 H29 VL7 51 VL7 H28 H27 H 0 1 N N N 17.130 5.192 -4.673 -1.163 -2.575 -0.547 H28 VL7 52 VL7 H31 H28 H 0 1 N N N 18.967 3.520 -6.734 1.170 -3.469 -0.560 H31 VL7 53 VL7 H30 H29 H 0 1 N N N 19.487 4.307 -5.205 1.736 -1.982 -1.358 H30 VL7 54 VL7 H32 H30 H 0 1 N N N 20.828 3.062 -8.000 3.601 -4.310 -0.797 H32 VL7 55 VL7 H35 H31 H 0 1 N N N 23.056 6.065 -9.491 5.680 -0.826 -0.682 H35 VL7 56 VL7 H34 H32 H 0 1 N N N 21.510 6.622 -8.764 4.720 -1.257 0.754 H34 VL7 57 VL7 H36 H33 H 0 1 N N N 21.650 5.737 -11.706 6.821 -2.619 1.584 H36 VL7 58 VL7 H38 H34 H 0 1 N N N 17.868 8.006 -9.245 8.699 2.451 -1.306 H38 VL7 59 VL7 H39 H35 H 0 1 N N N 18.288 7.356 -10.866 7.048 2.743 -0.709 H39 VL7 60 VL7 H40 H36 H 0 1 N N N 14.730 8.088 -11.371 9.077 4.916 -1.467 H40 VL7 61 VL7 H41 H37 H 0 1 N N N 16.049 6.902 -11.652 7.425 5.208 -0.870 H41 VL7 62 VL7 H42 H38 H 0 1 N N N 15.488 7.241 -9.980 8.815 5.951 -0.043 H42 VL7 63 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VL7 C20 C19 DOUB N Z 1 VL7 C20 C21 SING N N 2 VL7 C25 C24 SING N N 3 VL7 C19 C18 SING N N 4 VL7 C24 C23 SING N N 5 VL7 C22 C23 SING N N 6 VL7 C22 C21 SING N N 7 VL7 C18 C17 SING N N 8 VL7 C17 C16 DOUB N Z 9 VL7 C16 C15 SING N N 10 VL7 C15 C14 SING N N 11 VL7 C13 C14 SING N N 12 VL7 C13 C12 SING N N 13 VL7 C11 C10 SING N N 14 VL7 C11 C12 SING N N 15 VL7 C09 C10 SING N N 16 VL7 C09 C02 SING N N 17 VL7 C05 O06 SING N N 18 VL7 C05 C04 SING N N 19 VL7 C02 O01 DOUB N N 20 VL7 C02 O03 SING N N 21 VL7 O03 C04 SING N N 22 VL7 O08 C07 SING N N 23 VL7 C04 C07 SING N N 24 VL7 C10 H2 SING N N 25 VL7 C10 H1 SING N N 26 VL7 C13 H3 SING N N 27 VL7 C13 H4 SING N N 28 VL7 C15 H5 SING N N 29 VL7 C15 H6 SING N N 30 VL7 C17 H7 SING N N 31 VL7 C20 H10 SING N N 32 VL7 C21 H11 SING N N 33 VL7 C21 H12 SING N N 34 VL7 C22 H13 SING N N 35 VL7 C22 H14 SING N N 36 VL7 C24 H16 SING N N 37 VL7 C24 H15 SING N N 38 VL7 C04 H17 SING N N 39 VL7 C05 H18 SING N N 40 VL7 C05 H19 SING N N 41 VL7 O06 H20 SING N N 42 VL7 C07 H22 SING N N 43 VL7 C07 H21 SING N N 44 VL7 O08 H23 SING N N 45 VL7 C09 H25 SING N N 46 VL7 C09 H24 SING N N 47 VL7 C11 H27 SING N N 48 VL7 C11 H26 SING N N 49 VL7 C12 H29 SING N N 50 VL7 C12 H28 SING N N 51 VL7 C14 H31 SING N N 52 VL7 C14 H30 SING N N 53 VL7 C16 H32 SING N N 54 VL7 C18 H35 SING N N 55 VL7 C18 H34 SING N N 56 VL7 C19 H36 SING N N 57 VL7 C23 H38 SING N N 58 VL7 C23 H39 SING N N 59 VL7 C25 H40 SING N N 60 VL7 C25 H41 SING N N 61 VL7 C25 H42 SING N N 62 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VL7 SMILES ACDLabs 12.01 "C(CC(=O)OC(CO)CO)CCCCCC=[C@H]C\C=C/CCCCC" VL7 InChI InChI 1.03 "InChI=1S/C21H38O4/c1-2-3-4-5-6-7-8-9-10-11-12-13-14-15-16-17-21(24)25-20(18-22)19-23/h6-7,9-10,20,22-23H,2-5,8,11-19H2,1H3/b7-6-,10-9-" VL7 InChIKey InChI 1.03 IEPGNWMPIFDNSD-HZJYTTRNSA-N VL7 SMILES_CANONICAL CACTVS 3.385 "CCCCC\C=C/C\C=C/CCCCCCCC(=O)OC(CO)CO" VL7 SMILES CACTVS 3.385 "CCCCCC=CCC=CCCCCCCCC(=O)OC(CO)CO" VL7 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCCC/C=C\C/C=C\CCCCCCCC(=O)OC(CO)CO" VL7 SMILES "OpenEye OEToolkits" 2.0.7 "CCCCCC=CCC=CCCCCCCCC(=O)OC(CO)CO" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier VL7 "SYSTEMATIC NAME" ACDLabs 12.01 "1,3-dihydroxypropan-2-yl (9Z,12Z)-octadeca-9,12-dienoate" VL7 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "1,3-bis(oxidanyl)propan-2-yl (9~{Z},12~{Z})-octadeca-9,12-dienoate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VL7 "Create component" 2020-08-26 RCSB VL7 "Initial release" 2021-03-10 RCSB ##