data_VLA # _chem_comp.id VLA _chem_comp.name "N-(4-{[(2,4-diamino-7,8-dihydropyrido[3,2-d]pyrimidin-6-yl)methyl]amino}benzene-1-carbonyl)-L-glutamic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H23 N7 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-08-27 _chem_comp.pdbx_modified_date 2021-04-16 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 441.441 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VLA _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7JX1 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VLA C C1 C 0 1 N N N -13.888 13.073 -19.055 -3.615 -1.314 0.530 C VLA 1 VLA N N1 N 0 1 N N N -14.238 12.387 -20.182 -4.507 -0.529 -0.107 N VLA 2 VLA CA C2 C 0 1 N N S -13.294 12.163 -21.342 -5.941 -0.804 0.011 CA VLA 3 VLA O O1 O 0 1 N N N -12.719 13.537 -18.957 -4.002 -2.250 1.204 O VLA 4 VLA CB C3 C 0 1 N N N -12.953 10.593 -21.439 -6.729 0.484 -0.235 CB VLA 5 VLA CG C4 C 0 1 N N N -13.638 9.673 -20.339 -6.417 1.492 0.873 CG VLA 6 VLA CD C5 C 0 1 N N N -13.134 8.190 -20.212 -7.194 2.760 0.632 CD VLA 7 VLA OE1 O2 O 0 1 N N N -13.309 7.340 -21.157 -7.921 2.850 -0.329 OE1 VLA 8 VLA OE2 O3 O 0 1 N N N -12.527 7.748 -19.161 -7.076 3.792 1.483 OE2 VLA 9 VLA C12 C6 C 0 1 Y N N -14.800 13.322 -17.762 -2.171 -1.041 0.407 C12 VLA 10 VLA C13 C7 C 0 1 Y N N -16.103 12.769 -17.571 -1.245 -1.857 1.063 C13 VLA 11 VLA C14 C8 C 0 1 Y N N -16.863 13.000 -16.383 0.102 -1.600 0.945 C14 VLA 12 VLA C15 C9 C 0 1 Y N N -16.355 13.788 -15.322 0.542 -0.528 0.174 C15 VLA 13 VLA C16 C10 C 0 1 Y N N -15.049 14.326 -15.510 -0.377 0.287 -0.481 C16 VLA 14 VLA C17 C11 C 0 1 Y N N -14.294 14.087 -16.704 -1.725 0.031 -0.372 C17 VLA 15 VLA C2 C12 C 0 1 Y N N -12.344 19.425 -13.714 8.559 0.117 0.202 C2 VLA 16 VLA C4 C13 C 0 1 Y N N -13.943 18.139 -15.013 6.602 -1.080 0.462 C4 VLA 17 VLA C4A C14 C 0 1 Y N N -14.471 17.542 -13.771 5.881 0.056 0.050 C4A VLA 18 VLA C6 C15 C 0 1 N N N -15.660 15.661 -12.602 3.874 0.916 -0.716 C6 VLA 19 VLA C7 C16 C 0 1 N N N -15.085 16.042 -11.214 4.584 1.999 -1.482 C7 VLA 20 VLA C8 C17 C 0 1 N N N -14.339 17.412 -11.195 5.842 2.434 -0.731 C8 VLA 21 VLA C8A C18 C 0 1 Y N N -13.863 17.963 -12.568 6.592 1.207 -0.282 C8A VLA 22 VLA C9 C19 C 0 1 N N N -16.373 14.247 -12.775 2.369 0.857 -0.755 C9 VLA 23 VLA CT C20 C 0 1 N N N -13.906 12.745 -22.672 -6.339 -1.839 -1.009 CT VLA 24 VLA N1 N2 N 0 1 Y N N -12.814 18.891 -12.528 7.909 1.204 -0.196 N1 VLA 25 VLA N10 N3 N 0 1 N N N -17.112 14.040 -14.071 1.904 -0.271 0.057 N10 VLA 26 VLA N3 N4 N 0 1 Y N N -12.887 19.070 -14.975 7.928 -1.003 0.522 N3 VLA 27 VLA N5 N5 N 0 1 N N N -15.585 16.556 -13.732 4.518 0.040 -0.028 N5 VLA 28 VLA NA2 N6 N 0 1 N N N -11.258 20.382 -13.650 9.940 0.153 0.280 NA2 VLA 29 VLA NA4 N7 N 0 1 N N N -14.469 17.797 -16.302 5.946 -2.251 0.797 NA4 VLA 30 VLA O1 O4 O 0 1 N N N -13.172 12.935 -23.688 -5.511 -2.300 -1.758 O1 VLA 31 VLA O2 O5 O 0 1 N N N -15.155 13.044 -22.738 -7.615 -2.250 -1.086 O2 VLA 32 VLA H1 H1 H 0 1 N N N -15.164 12.014 -20.244 -4.199 0.217 -0.645 H1 VLA 33 VLA H2 H2 H 0 1 N N N -12.353 12.696 -21.140 -6.158 -1.178 1.012 H2 VLA 34 VLA H3 H3 H 0 1 N N N -13.277 10.237 -22.428 -6.445 0.905 -1.199 H3 VLA 35 VLA H4 H4 H 0 1 N N N -13.484 10.157 -19.363 -6.701 1.070 1.838 H4 VLA 36 VLA H5 H5 H 0 1 N N N -12.309 6.831 -19.282 -7.594 4.584 1.286 H5 VLA 37 VLA H6 H6 H 0 1 N N N -16.528 12.155 -18.351 -1.586 -2.688 1.662 H6 VLA 38 VLA H7 H7 H 0 1 N N N -17.847 12.564 -16.292 0.818 -2.230 1.452 H7 VLA 39 VLA H8 H8 H 0 1 N N N -14.615 14.932 -14.729 -0.032 1.118 -1.078 H8 VLA 40 VLA H9 H9 H 0 1 N N N -13.304 14.510 -16.791 -2.438 0.661 -0.883 H9 VLA 41 VLA H10 H10 H 0 1 N N N -15.917 16.090 -10.496 4.863 1.623 -2.466 H10 VLA 42 VLA H11 H11 H 0 1 N N N -14.378 15.258 -10.905 3.919 2.855 -1.597 H11 VLA 43 VLA H12 H12 H 0 1 N N N -13.452 17.300 -10.554 6.474 3.028 -1.391 H12 VLA 44 VLA H13 H13 H 0 1 N N N -15.018 18.156 -10.754 5.562 3.028 0.138 H13 VLA 45 VLA H14 H14 H 0 1 N N N -17.094 14.130 -11.953 1.959 1.785 -0.356 H14 VLA 46 VLA H15 H15 H 0 1 N N N -17.660 14.862 -14.226 2.545 -0.837 0.512 H15 VLA 47 VLA H17 H17 H 0 1 N N N -11.023 20.683 -14.574 10.418 0.964 0.045 H17 VLA 48 VLA H18 H18 H 0 1 N N N -11.541 21.171 -13.104 10.430 -0.632 0.569 H18 VLA 49 VLA H19 H19 H 0 1 N N N -13.975 18.302 -17.009 6.454 -3.028 1.079 H19 VLA 50 VLA H20 H20 H 0 1 N N N -14.360 16.815 -16.456 4.978 -2.295 0.749 H20 VLA 51 VLA H21 H21 H 0 1 N N N -15.354 13.387 -23.601 -7.823 -2.915 -1.756 H21 VLA 52 VLA H22 H22 H 0 1 N N N -11.863 10.477 -21.346 -7.796 0.262 -0.235 H22 VLA 53 VLA H23 H23 H 0 1 N N N -14.714 9.636 -20.565 -5.350 1.713 0.874 H23 VLA 54 VLA H24 H24 H 0 1 N N N -15.600 13.468 -12.699 2.037 0.725 -1.784 H24 VLA 55 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VLA O1 CT DOUB N N 1 VLA O2 CT SING N N 2 VLA CT CA SING N N 3 VLA CB CA SING N N 4 VLA CB CG SING N N 5 VLA CA N SING N N 6 VLA OE1 CD DOUB N N 7 VLA CG CD SING N N 8 VLA CD OE2 SING N N 9 VLA N C SING N N 10 VLA C O DOUB N N 11 VLA C C12 SING N N 12 VLA C12 C13 DOUB Y N 13 VLA C12 C17 SING Y N 14 VLA C13 C14 SING Y N 15 VLA C17 C16 DOUB Y N 16 VLA C14 C15 DOUB Y N 17 VLA NA4 C4 SING N N 18 VLA C16 C15 SING Y N 19 VLA C15 N10 SING N N 20 VLA C4 N3 DOUB Y N 21 VLA C4 C4A SING Y N 22 VLA N3 C2 SING Y N 23 VLA N10 C9 SING N N 24 VLA C4A N5 SING N N 25 VLA C4A C8A DOUB Y N 26 VLA N5 C6 DOUB N N 27 VLA C2 NA2 SING N N 28 VLA C2 N1 DOUB Y N 29 VLA C9 C6 SING N N 30 VLA C6 C7 SING N N 31 VLA C8A N1 SING Y N 32 VLA C8A C8 SING N N 33 VLA C7 C8 SING N N 34 VLA N H1 SING N N 35 VLA CA H2 SING N N 36 VLA CB H3 SING N N 37 VLA CG H4 SING N N 38 VLA OE2 H5 SING N N 39 VLA C13 H6 SING N N 40 VLA C14 H7 SING N N 41 VLA C16 H8 SING N N 42 VLA C17 H9 SING N N 43 VLA C7 H10 SING N N 44 VLA C7 H11 SING N N 45 VLA C8 H12 SING N N 46 VLA C8 H13 SING N N 47 VLA C9 H14 SING N N 48 VLA N10 H15 SING N N 49 VLA NA2 H17 SING N N 50 VLA NA2 H18 SING N N 51 VLA NA4 H19 SING N N 52 VLA NA4 H20 SING N N 53 VLA O2 H21 SING N N 54 VLA CB H22 SING N N 55 VLA CG H23 SING N N 56 VLA C9 H24 SING N N 57 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VLA SMILES ACDLabs 12.01 "C(=O)(c3ccc(NCC=2CCc1c(c(nc(N)n1)N)N=2)cc3)NC(CCC(O)=O)C(=O)O" VLA InChI InChI 1.03 "InChI=1S/C20H23N7O5/c21-17-16-13(26-20(22)27-17)6-5-12(24-16)9-23-11-3-1-10(2-4-11)18(30)25-14(19(31)32)7-8-15(28)29/h1-4,14,23H,5-9H2,(H,25,30)(H,28,29)(H,31,32)(H4,21,22,26,27)/t14-/m0/s1" VLA InChIKey InChI 1.03 QECVBNUHIUCZFO-AWEZNQCLSA-N VLA SMILES_CANONICAL CACTVS 3.385 "Nc1nc(N)c2N=C(CCc2n1)CNc3ccc(cc3)C(=O)N[C@@H](CCC(O)=O)C(O)=O" VLA SMILES CACTVS 3.385 "Nc1nc(N)c2N=C(CCc2n1)CNc3ccc(cc3)C(=O)N[CH](CCC(O)=O)C(O)=O" VLA SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1C(=O)N[C@@H](CCC(=O)O)C(=O)O)NCC2=Nc3c(nc(nc3N)N)CC2" VLA SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1C(=O)NC(CCC(=O)O)C(=O)O)NCC2=Nc3c(nc(nc3N)N)CC2" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier VLA "SYSTEMATIC NAME" ACDLabs 12.01 "N-(4-{[(2,4-diamino-7,8-dihydropyrido[3,2-d]pyrimidin-6-yl)methyl]amino}benzene-1-carbonyl)-L-glutamic acid" VLA "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S})-2-[[4-[[2,4-bis(azanyl)-7,8-dihydropyrido[3,2-d]pyrimidin-6-yl]methylamino]phenyl]carbonylamino]pentanedioic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VLA "Create component" 2020-08-27 RCSB VLA "Initial release" 2021-04-21 RCSB ##