data_VLC # _chem_comp.id VLC _chem_comp.name "2-[6-azanyl-5-[(1R,5S)-8-[2-(2-methoxyethoxy)pyridin-4-yl]-3,8-diazabicyclo[3.2.1]octan-3-yl]pyridazin-3-yl]phenol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H28 N6 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-09-13 _chem_comp.pdbx_modified_date 2024-01-12 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 448.518 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VLC _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8QJT _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VLC O O1 O 0 1 N N N N N N 27.982 -12.286 -27.825 -7.283 0.615 0.648 O VLC 1 VLC C11 C1 C 0 1 Y N N N N N 27.355 -11.868 -28.951 -6.551 1.600 0.067 C11 VLC 2 VLC C12 C2 C 0 1 Y N N N N N 27.427 -12.732 -30.041 -7.157 2.789 -0.307 C12 VLC 3 VLC C13 C3 C 0 1 Y N N N N N 26.853 -12.373 -31.247 -6.411 3.791 -0.898 C13 VLC 4 VLC C14 C4 C 0 1 Y N N N N N 26.235 -11.151 -31.381 -5.056 3.614 -1.120 C14 VLC 5 VLC C15 C5 C 0 1 Y N N N N N 26.131 -10.294 -30.296 -4.440 2.436 -0.753 C15 VLC 6 VLC C10 C6 C 0 1 Y N N N N N 26.735 -10.610 -29.077 -5.181 1.421 -0.151 C10 VLC 7 VLC C8 C7 C 0 1 Y N N N N N 26.561 -9.696 -27.914 -4.522 0.155 0.251 C8 VLC 8 VLC C7 C8 C 0 1 Y N N N N N 25.888 -8.478 -28.028 -3.153 -0.022 0.032 C7 VLC 9 VLC N2 N1 N 0 1 Y N N N N N 26.969 -10.161 -26.726 -5.230 -0.809 0.824 N2 VLC 10 VLC N3 N2 N 0 1 Y N N N N N 26.774 -9.441 -25.607 -4.704 -1.921 1.190 N3 VLC 11 VLC C9 C9 C 0 1 Y N N N N N 26.161 -8.261 -25.678 -3.419 -2.184 1.021 C9 VLC 12 VLC N4 N3 N 0 1 N N N N N N 26.040 -7.604 -24.522 -2.896 -3.407 1.435 N4 VLC 13 VLC C6 C10 C 0 1 Y N N N N N 25.677 -7.720 -26.894 -2.583 -1.226 0.427 C6 VLC 14 VLC N1 N4 N 0 1 N N N N N N 25.006 -6.399 -26.991 -1.222 -1.474 0.241 N1 VLC 15 VLC C5 C11 C 0 1 N N N N N N 25.928 -5.242 -26.730 -0.865 -1.408 -1.183 C5 VLC 16 VLC C C12 C 0 1 N N S N N N 25.146 -3.922 -26.736 0.640 -1.682 -1.334 C VLC 17 VLC C4 C13 C 0 1 N N N N N N 24.121 -6.195 -28.192 -0.404 -0.558 1.048 C4 VLC 18 VLC C3 C14 C 0 1 N N R N N N 23.438 -4.812 -28.157 1.082 -0.868 0.803 C3 VLC 19 VLC C2 C15 C 0 1 N N N N N N 22.754 -4.505 -26.822 1.270 -2.397 0.938 C2 VLC 20 VLC C1 C16 C 0 1 N N N N N N 23.869 -3.955 -25.890 0.974 -2.939 -0.496 C1 VLC 21 VLC N N5 N 0 1 N N N N N N 24.595 -3.837 -28.149 1.354 -0.581 -0.632 N VLC 22 VLC C16 C17 C 0 1 Y N N N N N 24.782 -2.588 -28.920 2.720 -0.622 -0.899 C16 VLC 23 VLC C23 C18 C 0 1 Y N N N N N 24.148 -2.410 -30.147 3.584 0.315 -0.339 C23 VLC 24 VLC C19 C19 C 0 1 Y N N N N N 24.443 -1.263 -30.886 4.937 0.239 -0.629 C19 VLC 25 VLC N5 N6 N 0 1 Y N N N N N 25.305 -0.336 -30.501 5.405 -0.708 -1.427 N5 VLC 26 VLC C18 C20 C 0 1 Y N N N N N 25.933 -0.548 -29.332 4.613 -1.612 -1.974 C18 VLC 27 VLC C17 C21 C 0 1 Y N N N N N 25.727 -1.656 -28.530 3.257 -1.606 -1.730 C17 VLC 28 VLC O1 O2 O 0 1 N N N N N N 23.782 -1.110 -32.061 5.791 1.146 -0.090 O1 VLC 29 VLC C20 C22 C 0 1 N N N N N N 24.524 -1.318 -33.277 7.174 1.015 -0.428 C20 VLC 30 VLC C21 C23 C 0 1 N N N N N N 23.791 -2.284 -34.166 7.975 2.117 0.268 C21 VLC 31 VLC O2 O3 O 0 1 N N N N N N 24.046 -3.665 -33.875 7.911 1.931 1.683 O2 VLC 32 VLC C22 C24 C 0 1 N N N N N N 24.474 -4.417 -35.005 8.631 2.913 2.431 C22 VLC 33 VLC H15 H1 H 0 1 N N N N N N 28.327 -13.161 -27.960 -7.670 -0.010 0.020 H15 VLC 34 VLC H16 H2 H 0 1 N N N N N N 27.931 -13.682 -29.944 -8.214 2.932 -0.137 H16 VLC 35 VLC H17 H3 H 0 1 N N N N N N 26.890 -13.053 -32.085 -6.887 4.715 -1.189 H17 VLC 36 VLC H18 H4 H 0 1 N N N N N N 25.828 -10.857 -32.337 -4.480 4.402 -1.583 H18 VLC 37 VLC H19 H5 H 0 1 N N N N N N 25.577 -9.372 -30.395 -3.382 2.301 -0.929 H19 VLC 38 VLC H12 H6 H 0 1 N N N N N N 25.538 -8.134 -28.990 -2.558 0.752 -0.430 H12 VLC 39 VLC H14 H7 H 0 1 N N N N N N 26.450 -8.144 -23.787 -3.475 -4.067 1.848 H14 VLC 40 VLC H13 H8 H 0 1 N N N N N N 26.508 -6.723 -24.589 -1.954 -3.599 1.310 H13 VLC 41 VLC H11 H9 H 0 1 N N N N N N 26.407 -5.375 -25.749 -1.430 -2.159 -1.736 H11 VLC 42 VLC H10 H10 H 0 1 N N N N N N 26.699 -5.210 -27.513 -1.098 -0.417 -1.572 H10 VLC 43 VLC H1 H11 H 0 1 N N N N N N 25.785 -3.063 -26.486 0.939 -1.787 -2.377 H1 VLC 44 VLC H9 H12 H 0 1 N N N N N N 23.347 -6.977 -28.204 -0.615 0.471 0.758 H9 VLC 45 VLC H8 H13 H 0 1 N N N N N N 24.732 -6.270 -29.104 -0.638 -0.695 2.104 H8 VLC 46 VLC H2 H14 H 0 1 N N N N N N 22.765 -4.661 -29.014 1.737 -0.308 1.471 H2 VLC 47 VLC H7 H15 H 0 1 N N N N N N 22.316 -5.420 -26.397 2.294 -2.630 1.231 H7 VLC 48 VLC H6 H16 H 0 1 N N N N N N 21.965 -3.751 -26.961 0.566 -2.804 1.664 H6 VLC 49 VLC H4 H17 H 0 1 N N N N N N 24.003 -4.617 -25.022 0.123 -3.619 -0.475 H4 VLC 50 VLC H5 H18 H 0 1 N N N N N N 23.613 -2.943 -25.544 1.853 -3.442 -0.900 H5 VLC 51 VLC H29 H19 H 0 1 N N N N N N 23.445 -3.141 -30.518 3.206 1.090 0.312 H29 VLC 52 VLC H21 H20 H 0 1 N N N N N N 26.643 0.194 -28.998 5.035 -2.368 -2.619 H21 VLC 53 VLC H20 H21 H 0 1 N N N N N N 26.292 -1.791 -27.619 2.618 -2.352 -2.178 H20 VLC 54 VLC H22 H22 H 0 1 N N N N N N 24.642 -0.358 -33.801 7.536 0.041 -0.101 H22 VLC 55 VLC H23 H23 H 0 1 N N N N N N 25.516 -1.727 -33.034 7.294 1.104 -1.507 H23 VLC 56 VLC H25 H24 H 0 1 N N N N N N 22.712 -2.102 -34.056 9.014 2.072 -0.058 H25 VLC 57 VLC H24 H25 H 0 1 N N N N N N 24.091 -2.090 -35.206 7.555 3.089 0.010 H24 VLC 58 VLC H26 H26 H 0 1 N N N N N N 24.649 -5.461 -34.706 8.225 3.902 2.219 H26 VLC 59 VLC H28 H27 H 0 1 N N N N N N 23.697 -4.384 -35.783 8.534 2.702 3.496 H28 VLC 60 VLC H27 H28 H 0 1 N N N N N N 25.407 -3.987 -35.399 9.684 2.885 2.150 H27 VLC 61 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VLC N C SING N N 1 VLC C C1 SING N N 2 VLC C1 C2 SING N N 3 VLC C2 C3 SING N N 4 VLC N C3 SING N N 5 VLC C3 C4 SING N N 6 VLC C4 N1 SING N N 7 VLC C5 N1 SING N N 8 VLC C C5 SING N N 9 VLC N1 C6 SING N N 10 VLC C6 C7 DOUB Y N 11 VLC C7 C8 SING Y N 12 VLC N2 C8 DOUB Y N 13 VLC N3 N2 SING Y N 14 VLC C9 N3 DOUB Y N 15 VLC C6 C9 SING Y N 16 VLC N4 C9 SING N N 17 VLC C8 C10 SING N N 18 VLC C10 C11 DOUB Y N 19 VLC C11 O SING N N 20 VLC C12 C11 SING Y N 21 VLC C13 C12 DOUB Y N 22 VLC C14 C13 SING Y N 23 VLC C15 C14 DOUB Y N 24 VLC C10 C15 SING Y N 25 VLC C16 N SING N N 26 VLC C16 C17 DOUB Y N 27 VLC C17 C18 SING Y N 28 VLC C18 N5 DOUB Y N 29 VLC N5 C19 SING Y N 30 VLC O1 C19 SING N N 31 VLC C20 O1 SING N N 32 VLC C21 C20 SING N N 33 VLC O2 C21 SING N N 34 VLC C22 O2 SING N N 35 VLC C19 C23 DOUB Y N 36 VLC C23 C16 SING Y N 37 VLC O H15 SING N N 38 VLC C12 H16 SING N N 39 VLC C13 H17 SING N N 40 VLC C14 H18 SING N N 41 VLC C15 H19 SING N N 42 VLC C7 H12 SING N N 43 VLC N4 H14 SING N N 44 VLC N4 H13 SING N N 45 VLC C5 H11 SING N N 46 VLC C5 H10 SING N N 47 VLC C H1 SING N N 48 VLC C4 H9 SING N N 49 VLC C4 H8 SING N N 50 VLC C3 H2 SING N N 51 VLC C2 H7 SING N N 52 VLC C2 H6 SING N N 53 VLC C1 H4 SING N N 54 VLC C1 H5 SING N N 55 VLC C23 H29 SING N N 56 VLC C18 H21 SING N N 57 VLC C17 H20 SING N N 58 VLC C20 H22 SING N N 59 VLC C20 H23 SING N N 60 VLC C21 H25 SING N N 61 VLC C21 H24 SING N N 62 VLC C22 H26 SING N N 63 VLC C22 H28 SING N N 64 VLC C22 H27 SING N N 65 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VLC InChI InChI 1.06 "InChI=1S/C24H28N6O3/c1-32-10-11-33-23-12-16(8-9-26-23)30-17-6-7-18(30)15-29(14-17)21-13-20(27-28-24(21)25)19-4-2-3-5-22(19)31/h2-5,8-9,12-13,17-18,31H,6-7,10-11,14-15H2,1H3,(H2,25,28)/t17-,18+" VLC InChIKey InChI 1.06 VDJLADNPSHUUOZ-HDICACEKSA-N VLC SMILES_CANONICAL CACTVS 3.385 "COCCOc1cc(ccn1)N2[C@@H]3CC[C@H]2CN(C3)c4cc(nnc4N)c5ccccc5O" VLC SMILES CACTVS 3.385 "COCCOc1cc(ccn1)N2[CH]3CC[CH]2CN(C3)c4cc(nnc4N)c5ccccc5O" VLC SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "COCCOc1cc(ccn1)N2[C@@H]3CC[C@H]2CN(C3)c4cc(nnc4N)c5ccccc5O" VLC SMILES "OpenEye OEToolkits" 2.0.7 "COCCOc1cc(ccn1)N2C3CCC2CN(C3)c4cc(nnc4N)c5ccccc5O" # _pdbx_chem_comp_identifier.comp_id VLC _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "2-[6-azanyl-5-[(1~{R},5~{S})-8-[2-(2-methoxyethoxy)pyridin-4-yl]-3,8-diazabicyclo[3.2.1]octan-3-yl]pyridazin-3-yl]phenol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VLC "Create component" 2023-09-13 PDBE VLC "Initial release" 2024-01-17 RCSB #