data_VLK # _chem_comp.id VLK _chem_comp.name "(2R)-2-[[methanoyl(oxidanyl)amino]methyl]-N-[(2S)-3-methyl-1-oxidanylidene-1-[2-(sulfanylmethyl)pyrrolidin-1-yl]butan-2-yl]heptanamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C19 H35 N3 O4 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-03-15 _chem_comp.pdbx_modified_date 2023-12-22 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 401.564 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VLK _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8OFE _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VLK C1 C1 C 0 1 N N N N N N -5.928 21.982 7.542 6.288 -4.354 -0.963 C1 VLK 1 VLK C2 C2 C 0 1 N N N N N N -4.657 21.403 8.126 5.073 -3.501 -1.334 C2 VLK 2 VLK C6 C3 C 0 1 N N R N N N -5.008 16.936 5.830 2.361 0.498 -0.065 C6 VLK 3 VLK C5 C4 C 0 1 N N N N N N -4.060 18.117 6.051 3.640 -0.288 0.231 C5 VLK 4 VLK C4 C5 C 0 1 N N N N N N -4.756 19.332 6.638 3.749 -1.468 -0.737 C4 VLK 5 VLK C3 C6 C 0 1 N N N N N N -3.898 20.466 7.194 4.964 -2.321 -0.366 C3 VLK 6 VLK C11 C7 C 0 1 N N N N N N -9.243 18.957 5.169 -2.429 -0.231 -0.410 C11 VLK 7 VLK C10 C8 C 0 1 N N S N N N -8.493 17.800 4.519 -1.248 -0.691 0.405 C10 VLK 8 VLK C8 C9 C 0 1 N N N N N N -2.293 15.372 6.547 3.291 3.394 -0.758 C8 VLK 9 VLK C18 C10 C 0 1 N N N N N N -8.647 15.570 3.403 -0.373 -1.025 2.721 C18 VLK 10 VLK C17 C11 C 0 1 N N N N N N -9.391 16.572 4.276 -1.572 -0.558 1.894 C17 VLK 11 VLK C19 C12 C 0 1 N N N N N N -9.845 15.917 5.567 -1.878 0.905 2.221 C19 VLK 12 VLK C7 C13 C 0 1 N N N N N N -4.328 15.695 5.274 2.335 1.769 0.786 C7 VLK 13 VLK C9 C14 C 0 1 N N N N N N -6.115 17.325 4.858 1.161 -0.353 0.266 C9 VLK 14 VLK N1 N1 N 0 1 N N N N N N -3.541 15.145 6.361 3.419 2.660 0.366 N1 VLK 15 VLK N2 N2 N 0 1 N N N N N N -7.341 17.485 5.359 -0.082 0.136 0.084 N2 VLK 16 VLK N3 N3 N 0 1 N N N N N N -10.105 19.629 4.378 -3.619 -0.849 -0.279 N3 VLK 17 VLK O1 O1 O 0 1 N N N N N N -4.135 14.406 7.383 4.601 2.751 1.140 O1 VLK 18 VLK O2 O2 O 0 1 N N N N N N -1.782 15.089 7.588 4.188 4.131 -1.106 O2 VLK 19 VLK O3 O3 O 0 1 N N N N N N -5.870 17.479 3.675 1.314 -1.476 0.696 O3 VLK 20 VLK O4 O4 O 0 1 N N N N N N -9.058 19.270 6.345 -2.309 0.696 -1.182 O4 VLK 21 VLK H1 H1 H 0 1 N N N N N N -6.405 22.642 8.282 6.365 -5.195 -1.653 H1 VLK 22 VLK H2 H2 H 0 1 N N N N N N -5.686 22.560 6.638 7.191 -3.747 -1.026 H2 VLK 23 VLK H3 H3 H 0 1 N N N N N N -6.617 21.165 7.282 6.172 -4.728 0.054 H3 VLK 24 VLK H5 H4 H 0 1 N N N N N N -4.922 20.842 9.035 5.189 -3.127 -2.351 H5 VLK 25 VLK H4 H5 H 0 1 N N N N N N -3.990 22.237 8.391 4.170 -4.108 -1.270 H4 VLK 26 VLK H12 H6 H 0 1 N N N N N N -5.469 16.677 6.795 2.336 0.766 -1.121 H12 VLK 27 VLK H10 H7 H 0 1 N N N N N N -3.262 17.803 6.740 4.504 0.364 0.108 H10 VLK 28 VLK H11 H8 H 0 1 N N N N N N -3.619 18.399 5.084 3.609 -0.660 1.255 H11 VLK 29 VLK H8 H9 H 0 1 N N N N N N -5.386 19.760 5.844 2.846 -2.075 -0.673 H8 VLK 30 VLK H9 H10 H 0 1 N N N N N N -5.394 18.975 7.460 3.865 -1.094 -1.754 H9 VLK 31 VLK H6 H11 H 0 1 N N N N N N -3.058 20.026 7.752 4.848 -2.695 0.651 H6 VLK 32 VLK H7 H12 H 0 1 N N N N N N -3.509 21.054 6.350 5.867 -1.714 -0.429 H7 VLK 33 VLK H18 H13 H 0 1 N N N N N N -8.129 18.144 3.540 -1.030 -1.733 0.172 H18 VLK 34 VLK H16 H14 H 0 1 N N N N N N -1.703 15.820 5.761 2.389 3.324 -1.348 H16 VLK 35 VLK H31 H15 H 0 1 N N N N N N -9.285 14.691 3.227 -0.604 -0.930 3.782 H31 VLK 36 VLK H30 H16 H 0 1 N N N N N N -8.395 16.039 2.440 -0.155 -2.067 2.488 H30 VLK 37 VLK H32 H17 H 0 1 N N N N N N -7.723 15.256 3.911 0.495 -0.410 2.482 H32 VLK 38 VLK H29 H18 H 0 1 N N N N N N -10.284 16.908 3.728 -2.440 -1.173 2.133 H29 VLK 39 VLK H35 H19 H 0 1 N N N N N N -10.380 16.654 6.184 -1.011 1.520 1.982 H35 VLK 40 VLK H33 H20 H 0 1 N N N N N N -10.516 15.077 5.335 -2.733 1.238 1.632 H33 VLK 41 VLK H34 H21 H 0 1 N N N N N N -8.968 15.545 6.117 -2.110 1.000 3.282 H34 VLK 42 VLK H14 H22 H 0 1 N N N N N N -5.080 14.965 4.940 1.378 2.274 0.656 H14 VLK 43 VLK H13 H23 H 0 1 N N N N N N -3.677 15.963 4.429 2.467 1.506 1.836 H13 VLK 44 VLK H17 H24 H 0 1 N N N N N N -7.476 17.386 6.345 -0.204 1.035 -0.260 H17 VLK 45 VLK H15 H27 H 0 1 N N N N N N -3.501 14.254 8.074 5.259 3.364 0.783 H15 VLK 46 VLK C14 C15 C 0 1 N N N N N N ? ? ? -4.878 -0.428 -0.911 C14 VLK 47 VLK C12 C16 C 0 1 N N N N N N ? ? ? -5.961 -1.448 -0.501 C12 VLK 48 VLK C15 C17 C 0 1 N N N N N N ? ? ? -5.131 -2.702 -0.122 C15 VLK 49 VLK C16 C18 C 0 1 N N N N N N ? ? ? -3.874 -2.065 0.516 C16 VLK 50 VLK C13 C19 C 0 1 N N N N N N ? ? ? -5.265 0.969 -0.420 C13 VLK 51 VLK H19 H26 H 0 1 N N N N N N ? ? ? -4.765 -0.423 -1.996 H19 VLK 52 VLK H20 H38 H 0 1 N N N N N N ? ? ? -6.527 -1.085 0.357 H20 VLK 53 VLK H21 H28 H 0 1 N N N N N N ? ? ? -6.625 -1.663 -1.339 H21 VLK 54 VLK H22 H29 H 0 1 N N N N N N ? ? ? -5.665 -3.321 0.599 H22 VLK 55 VLK H23 H30 H 0 1 N N N N N N ? ? ? -4.866 -3.278 -1.008 H23 VLK 56 VLK H24 H31 H 0 1 N N N N N N ? ? ? -3.027 -2.748 0.451 H24 VLK 57 VLK H25 H25 H 0 1 N N N N N N ? ? ? -4.069 -1.798 1.554 H25 VLK 58 VLK H27 H34 H 0 1 N N N N N N ? ? ? -6.267 1.213 -0.773 H27 VLK 59 VLK H28 H37 H 0 1 N N N N N N ? ? ? -5.249 0.987 0.670 H28 VLK 60 VLK S1 S1 S 0 1 N N N N N N ? ? ? -4.084 2.185 -1.063 S1 VLK 61 VLK H26 H35 H 0 1 N N N N N N ? ? ? -4.540 3.346 -0.559 H26 VLK 62 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VLK C18 C17 SING N N 1 VLK O3 C9 DOUB N N 2 VLK C17 C10 SING N N 3 VLK C17 C19 SING N N 4 VLK N3 C11 SING N N 5 VLK C10 C11 SING N N 6 VLK C10 N2 SING N N 7 VLK C9 N2 SING N N 8 VLK C9 C6 SING N N 9 VLK C11 O4 DOUB N N 10 VLK C7 C6 SING N N 11 VLK C7 N1 SING N N 12 VLK C6 C5 SING N N 13 VLK C5 C4 SING N N 14 VLK N1 C8 SING N N 15 VLK N1 O1 SING N N 16 VLK C8 O2 DOUB N N 17 VLK C4 C3 SING N N 18 VLK C3 C2 SING N N 19 VLK C1 C2 SING N N 20 VLK C1 H1 SING N N 21 VLK C1 H2 SING N N 22 VLK C1 H3 SING N N 23 VLK C2 H5 SING N N 24 VLK C2 H4 SING N N 25 VLK C6 H12 SING N N 26 VLK C5 H10 SING N N 27 VLK C5 H11 SING N N 28 VLK C4 H8 SING N N 29 VLK C4 H9 SING N N 30 VLK C3 H6 SING N N 31 VLK C3 H7 SING N N 32 VLK C10 H18 SING N N 33 VLK C8 H16 SING N N 34 VLK C18 H31 SING N N 35 VLK C18 H30 SING N N 36 VLK C18 H32 SING N N 37 VLK C17 H29 SING N N 38 VLK C19 H35 SING N N 39 VLK C19 H33 SING N N 40 VLK C19 H34 SING N N 41 VLK C7 H14 SING N N 42 VLK C7 H13 SING N N 43 VLK N2 H17 SING N N 44 VLK O1 H15 SING N N 45 VLK N3 C14 SING N N 46 VLK C14 C12 SING N N 47 VLK C12 C15 SING N N 48 VLK C15 C16 SING N N 49 VLK C16 N3 SING N N 50 VLK C14 C13 SING N N 51 VLK C14 H19 SING N N 52 VLK C12 H20 SING N N 53 VLK C12 H21 SING N N 54 VLK C15 H22 SING N N 55 VLK C15 H23 SING N N 56 VLK C16 H24 SING N N 57 VLK C16 H25 SING N N 58 VLK C13 H27 SING N N 59 VLK C13 H28 SING N N 60 VLK C13 S1 SING N N 61 VLK S1 H26 SING N N 62 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VLK InChI InChI 1.06 "InChI=1S/C19H35N3O4S/c1-4-5-6-8-15(11-21(26)13-23)18(24)20-17(14(2)3)19(25)22-10-7-9-16(22)12-27/h13-17,26-27H,4-12H2,1-3H3,(H,20,24)/t15-,16?,17+/m1/s1" VLK InChIKey InChI 1.06 KKQZXQHPCTWHGR-SKQWJGTPSA-N VLK SMILES_CANONICAL CACTVS 3.385 "CCCCC[C@H](CN(O)C=O)C(=O)N[C@@H](C(C)C)C(=O)N1CCCC1CS" VLK SMILES CACTVS 3.385 "CCCCC[CH](CN(O)C=O)C(=O)N[CH](C(C)C)C(=O)N1CCCC1CS" VLK SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCCC[C@H](CN(C=O)O)C(=O)N[C@@H](C(C)C)C(=O)N1CCCC1CS" VLK SMILES "OpenEye OEToolkits" 2.0.7 "CCCCCC(CN(C=O)O)C(=O)NC(C(C)C)C(=O)N1CCCC1CS" # _pdbx_chem_comp_identifier.comp_id VLK _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{R})-2-[[methanoyl(oxidanyl)amino]methyl]-~{N}-[(2~{S})-3-methyl-1-oxidanylidene-1-[2-(sulfanylmethyl)pyrrolidin-1-yl]butan-2-yl]heptanamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VLK "Create component" 2023-03-15 PDBE VLK "Modify descriptor" 2023-03-23 PDBE VLK "Initial release" 2023-12-27 RCSB #