data_VLM # _chem_comp.id VLM _chem_comp.name VALINYLAMINE _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C5 H12 N2 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 116.162 _chem_comp.one_letter_code X _chem_comp.three_letter_code VLM _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm N # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VLM N N N 0 1 N N N N N N 43.073 15.736 47.335 -0.197 1.898 0.289 N VLM 1 VLM CA CA C 0 1 N N S N N N 43.750 15.803 48.651 -0.096 0.443 0.464 CA VLM 2 VLM C C C 0 1 N N N N N N 43.491 17.154 49.302 1.277 -0.019 0.049 C VLM 3 VLM O O O 0 1 N N N N N N 43.754 18.190 48.704 1.958 0.677 -0.674 O VLM 4 VLM CB CB C 0 1 N N N N N N 45.265 15.595 48.470 -1.150 -0.249 -0.403 CB VLM 5 VLM CG1 CG1 C 0 1 N N N N N N 46.003 15.859 49.771 -1.046 -1.764 -0.221 CG1 VLM 6 VLM CG2 CG2 C 0 1 N N N N N N 45.519 14.176 47.985 -2.545 0.220 0.019 CG2 VLM 7 VLM NT NT N 0 1 N N N N N N 43.017 17.142 50.458 1.748 -1.206 0.481 NT VLM 8 VLM H 1HN H 0 1 N N N N N N 42.082 15.721 47.470 -0.045 2.158 -0.674 H VLM 9 VLM H2 2HN H 0 1 N Y N N N N 43.323 16.537 46.791 -1.086 2.241 0.621 H2 VLM 10 VLM HA HA H 0 1 N N N N N N 43.350 15.010 49.299 -0.264 0.190 1.511 HA VLM 11 VLM HB HB H 0 1 N N N N N N 45.643 16.307 47.722 -0.983 0.004 -1.450 HB VLM 12 VLM HG11 1HG1 H 0 0 N N N N N N 47.083 15.923 49.574 -1.797 -2.257 -0.839 HG11 VLM 13 VLM HG12 2HG1 H 0 0 N N N N N N 45.653 16.807 50.205 -0.052 -2.098 -0.522 HG12 VLM 14 VLM HG13 3HG1 H 0 0 N N N N N N 45.807 15.038 50.476 -1.213 -2.017 0.826 HG13 VLM 15 VLM HG21 1HG2 H 0 0 N N N N N N 45.580 14.169 46.887 -2.619 1.300 -0.111 HG21 VLM 16 VLM HG22 2HG2 H 0 0 N N N N N N 46.466 13.808 48.407 -3.296 -0.272 -0.599 HG22 VLM 17 VLM HG23 3HG2 H 0 0 N N N N N N 44.694 13.525 48.310 -2.712 -0.033 1.065 HG23 VLM 18 VLM HNT1 1HNT H 0 0 N N N N N N 42.883 16.198 50.759 1.204 -1.762 1.060 HNT1 VLM 19 VLM HNT2 2HNT H 0 0 N N N N N N 42.803 17.954 51.001 2.632 -1.503 0.214 HNT2 VLM 20 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VLM N CA SING N N 1 VLM N H SING N N 2 VLM N H2 SING N N 3 VLM CA C SING N N 4 VLM CA CB SING N N 5 VLM CA HA SING N N 6 VLM C O DOUB N N 7 VLM C NT SING N N 8 VLM CB CG1 SING N N 9 VLM CB CG2 SING N N 10 VLM CB HB SING N N 11 VLM CG1 HG11 SING N N 12 VLM CG1 HG12 SING N N 13 VLM CG1 HG13 SING N N 14 VLM CG2 HG21 SING N N 15 VLM CG2 HG22 SING N N 16 VLM CG2 HG23 SING N N 17 VLM NT HNT1 SING N N 18 VLM NT HNT2 SING N N 19 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VLM SMILES ACDLabs 10.04 "O=C(N)C(N)C(C)C" VLM InChI InChI 1.03 "InChI=1S/C5H12N2O/c1-3(2)4(6)5(7)8/h3-4H,6H2,1-2H3,(H2,7,8)/t4-/m0/s1" VLM InChIKey InChI 1.03 XDEHMKQLKPZERH-BYPYZUCNSA-N VLM SMILES_CANONICAL CACTVS 3.385 "CC(C)[C@H](N)C(N)=O" VLM SMILES CACTVS 3.385 "CC(C)[CH](N)C(N)=O" VLM SMILES_CANONICAL "OpenEye OEToolkits" 1.7.5 "CC(C)[C@@H](C(=O)N)N" VLM SMILES "OpenEye OEToolkits" 1.7.5 "CC(C)C(C(=O)N)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier VLM "SYSTEMATIC NAME" ACDLabs 10.04 L-valinamide VLM "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S)-2-amino-3-methyl-butanamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VLM "Create component" 1999-07-08 RCSB VLM "Modify descriptor" 2011-06-04 RCSB VLM "Modify descriptor" 2012-01-05 RCSB VLM "Modify coordinates" 2012-01-05 RCSB VLM "Modify PCM" 2024-09-27 PDBE #