data_VLN # _chem_comp.id VLN _chem_comp.name "(2~{R},3~{R},4~{S},5~{R})-2-(aminomethyl)-5-(hydroxymethyl)pyrrolidine-3,4-diol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C6 H14 N2 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-07-28 _chem_comp.pdbx_modified_date 2024-04-05 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 162.187 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VLN _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8K7D _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VLN CAA C1 C 0 1 N N S N N N -62.812 19.273 -32.474 0.631 1.299 -0.493 CAA VLN 1 VLN CAB C2 C 0 1 N N N N N N -65.167 18.981 -31.735 2.387 -0.345 0.242 CAB VLN 2 VLN CAC C3 C 0 1 N N R N N N -61.772 18.308 -32.990 -0.909 1.113 -0.533 CAC VLN 3 VLN CAD C4 C 0 1 N N R N N N -62.647 17.248 -33.644 -1.080 -0.240 0.202 CAD VLN 4 VLN CAE C5 C 0 1 N N N N N N -61.955 15.885 -33.646 -2.388 -0.913 -0.218 CAE VLN 5 VLN CAF C6 C 0 1 N N R N N N -63.804 18.308 -31.863 1.160 -0.142 -0.649 CAF VLN 6 VLN NAG N1 N 0 1 N N N N N N -63.878 17.198 -32.828 0.079 -1.052 -0.227 NAG VLN 7 VLN NAH N2 N 0 1 N N N N N N -61.006 15.766 -34.766 -2.472 -2.245 0.397 NAH VLN 8 VLN OAI O1 O 0 1 N N N N N N -63.434 19.956 -33.575 1.043 1.857 0.757 OAI VLN 9 VLN OAJ O2 O 0 1 N N N N N N -60.951 18.946 -33.978 -1.571 2.166 0.170 OAJ VLN 10 VLN OAK O3 O 0 1 N N N N N N -66.064 18.099 -31.054 2.939 -1.641 0.005 OAK VLN 11 VLN H1 H1 H 0 1 N N N N N N -62.395 19.960 -31.723 0.965 1.924 -1.321 H1 VLN 12 VLN H2 H2 H 0 1 N N N N N N -65.064 19.915 -31.163 3.134 0.415 0.010 H2 VLN 13 VLN H3 H3 H 0 1 N N N N N N -65.562 19.206 -32.737 2.095 -0.260 1.288 H3 VLN 14 VLN H4 H4 H 0 1 N N N N N N -61.182 17.880 -32.166 -1.268 1.047 -1.561 H4 VLN 15 VLN H5 H5 H 0 1 N N N N N N -62.883 17.545 -34.676 -1.059 -0.090 1.282 H5 VLN 16 VLN H6 H6 H 0 1 N N N N N N -62.717 15.097 -33.737 -3.231 -0.306 0.111 H6 VLN 17 VLN H7 H7 H 0 1 N N N N N N -61.409 15.759 -32.699 -2.413 -1.012 -1.303 H7 VLN 18 VLN H8 H8 H 0 1 N N N N N N -63.453 17.960 -30.881 1.422 -0.330 -1.690 H8 VLN 19 VLN H9 H9 H 0 1 N N N N N N -64.682 17.305 -33.413 0.388 -1.661 0.515 H9 VLN 20 VLN H11 H11 H 0 1 N N N N N N -60.571 14.866 -34.740 -2.386 -2.185 1.401 H11 VLN 21 VLN H12 H12 H 0 1 N N N N N N -61.496 15.875 -35.631 -3.328 -2.710 0.135 H12 VLN 22 VLN H14 H14 H 0 1 N N N N N N -64.087 20.562 -33.244 0.736 2.762 0.904 H14 VLN 23 VLN H15 H15 H 0 1 N N N N N N -60.409 19.606 -33.562 -1.413 3.046 -0.199 H15 VLN 24 VLN H16 H16 H 0 1 N N N N N N -66.915 18.514 -30.972 3.722 -1.839 0.536 H16 VLN 25 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VLN NAH CAE SING N N 1 VLN OAJ CAC SING N N 2 VLN CAE CAD SING N N 3 VLN CAD CAC SING N N 4 VLN CAD NAG SING N N 5 VLN OAI CAA SING N N 6 VLN CAC CAA SING N N 7 VLN NAG CAF SING N N 8 VLN CAA CAF SING N N 9 VLN CAF CAB SING N N 10 VLN CAB OAK SING N N 11 VLN CAA H1 SING N N 12 VLN CAB H2 SING N N 13 VLN CAB H3 SING N N 14 VLN CAC H4 SING N N 15 VLN CAD H5 SING N N 16 VLN CAE H6 SING N N 17 VLN CAE H7 SING N N 18 VLN CAF H8 SING N N 19 VLN NAG H9 SING N N 20 VLN NAH H11 SING N N 21 VLN NAH H12 SING N N 22 VLN OAI H14 SING N N 23 VLN OAJ H15 SING N N 24 VLN OAK H16 SING N N 25 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VLN InChI InChI 1.06 "InChI=1S/C6H14N2O3/c7-1-3-5(10)6(11)4(2-9)8-3/h3-6,8-11H,1-2,7H2/t3-,4-,5-,6+/m1/s1" VLN InChIKey InChI 1.06 NJOZFAFEQVQFJI-KAZBKCHUSA-N VLN SMILES_CANONICAL CACTVS 3.385 "NC[C@H]1N[C@H](CO)[C@H](O)[C@@H]1O" VLN SMILES CACTVS 3.385 "NC[CH]1N[CH](CO)[CH](O)[CH]1O" VLN SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C([C@@H]1[C@H]([C@H]([C@H](N1)CO)O)O)N" VLN SMILES "OpenEye OEToolkits" 2.0.7 "C(C1C(C(C(N1)CO)O)O)N" # _pdbx_chem_comp_identifier.comp_id VLN _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{R},3~{R},4~{S},5~{R})-2-(aminomethyl)-5-(hydroxymethyl)pyrrolidine-3,4-diol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VLN "Create component" 2023-07-28 PDBJ VLN "Initial release" 2024-04-10 RCSB #