data_VLP # _chem_comp.id VLP _chem_comp.name "1,3-dihydroxypropan-2-yl hexadecanoate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C19 H38 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-08-27 _chem_comp.pdbx_modified_date 2021-03-05 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 330.503 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VLP _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7JX2 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VLP C11 C1 C 0 1 N N N -0.140 -18.157 15.444 3.112 -0.491 0.083 C11 VLP 1 VLP C10 C2 C 0 1 N N N 0.163 -16.691 15.832 1.851 0.327 -0.205 C10 VLP 2 VLP C15 C3 C 0 1 N N N 4.178 -18.491 12.583 8.107 -0.394 0.167 C15 VLP 3 VLP C12 C4 C 0 1 N N N 0.605 -18.637 14.176 4.349 0.375 -0.163 C12 VLP 4 VLP C13 C5 C 0 1 N N N 2.139 -18.427 14.200 5.609 -0.442 0.125 C13 VLP 5 VLP C14 C6 C 0 1 N N N 2.914 -19.222 13.126 6.846 0.424 -0.120 C14 VLP 6 VLP C19 C7 C 0 1 N N N 3.500 -14.523 11.010 13.102 -0.297 0.251 C19 VLP 7 VLP C01 C8 C 0 1 N N N -3.510 -9.724 19.023 -9.135 -0.430 -0.974 C01 VLP 8 VLP C02 C9 C 0 1 N N N -4.028 -10.435 17.728 -7.986 0.445 -0.468 C02 VLP 9 VLP C03 C10 C 0 1 N N N -5.542 -10.128 17.637 -8.422 1.173 0.805 C03 VLP 10 VLP C04 C11 C 0 1 N N N -2.167 -10.406 16.223 -5.623 0.169 -0.326 C04 VLP 11 VLP C05 C12 C 0 1 N N N -2.015 -11.789 15.454 -4.381 -0.637 -0.043 C05 VLP 12 VLP C06 C13 C 0 1 N N N -0.877 -11.744 14.578 -3.144 0.230 -0.289 C06 VLP 13 VLP C07 C14 C 0 1 N N N -0.518 -13.140 14.013 -1.883 -0.588 -0.001 C07 VLP 14 VLP C08 C15 C 0 1 N N N -0.425 -14.252 15.152 -0.647 0.278 -0.247 C08 VLP 15 VLP C09 C16 C 0 1 N N N -0.050 -15.666 14.685 0.614 -0.539 0.041 C09 VLP 16 VLP C16 C17 C 0 1 N N N 3.914 -17.077 12.004 9.344 0.473 -0.079 C16 VLP 17 VLP C17 C18 C 0 1 N N N 5.160 -16.434 11.373 10.605 -0.345 0.209 C17 VLP 18 VLP C18 C19 C 0 1 N N N 5.007 -14.915 11.116 11.842 0.521 -0.036 C18 VLP 19 VLP O01 O1 O 0 1 N N N -3.410 -9.905 16.567 -6.834 -0.390 -0.177 O01 VLP 20 VLP O02 O2 O 0 1 N N N -4.637 -9.661 19.857 -9.559 -1.309 0.069 O02 VLP 21 VLP O03 O3 O 0 1 N N N -6.162 -10.940 18.621 -8.879 0.220 1.766 O03 VLP 22 VLP O04 O4 O 0 1 N N N -1.202 -9.812 16.663 -5.528 1.318 -0.688 O04 VLP 23 VLP H1 H1 H 0 1 N N N -1.222 -18.252 15.267 3.101 -0.822 1.122 H1 VLP 24 VLP H2 H2 H 0 1 N N N 0.152 -18.805 16.284 3.140 -1.359 -0.575 H2 VLP 25 VLP H3 H3 H 0 1 N N N 1.212 -16.631 16.156 1.823 1.195 0.454 H3 VLP 26 VLP H4 H4 H 0 1 N N N -0.496 -16.413 16.668 1.862 0.658 -1.243 H4 VLP 27 VLP H5 H5 H 0 1 N N N 4.616 -19.111 11.786 8.096 -0.725 1.206 H5 VLP 28 VLP H6 H6 H 0 1 N N N 4.898 -18.393 13.409 8.135 -1.262 -0.491 H6 VLP 29 VLP H7 H7 H 0 1 N N N 0.199 -18.089 13.313 4.360 0.707 -1.201 H7 VLP 30 VLP H8 H8 H 0 1 N N N 0.410 -19.712 14.052 4.321 1.244 0.496 H8 VLP 31 VLP H9 H9 H 0 1 N N N 2.512 -18.733 15.189 5.598 -0.774 1.163 H9 VLP 32 VLP H10 H10 H 0 1 N N N 2.341 -17.357 14.047 5.637 -1.311 -0.533 H10 VLP 33 VLP H11 H11 H 0 1 N N N 2.236 -19.413 12.281 6.818 1.292 0.538 H11 VLP 34 VLP H12 H12 H 0 1 N N N 3.231 -20.179 13.566 6.857 0.755 -1.159 H12 VLP 35 VLP H13 H13 H 0 1 N N N 3.414 -13.442 10.828 13.984 0.321 0.076 H13 VLP 36 VLP H14 H14 H 0 1 N N N 3.036 -15.073 10.178 13.091 -0.628 1.289 H14 VLP 37 VLP H15 H15 H 0 1 N N N 2.988 -14.778 11.949 13.130 -1.165 -0.407 H15 VLP 38 VLP H16 H16 H 0 1 N N N -2.708 -10.310 19.495 -9.968 0.205 -1.276 H16 VLP 39 VLP H17 H17 H 0 1 N N N -3.139 -8.715 18.792 -8.796 -1.016 -1.829 H17 VLP 40 VLP H18 H18 H 0 1 N N N -3.871 -11.520 17.814 -7.721 1.175 -1.232 H18 VLP 41 VLP H19 H19 H 0 1 N N N -5.730 -9.064 17.844 -7.577 1.726 1.215 H19 VLP 42 VLP H20 H20 H 0 1 N N N -5.924 -10.380 16.637 -9.229 1.866 0.568 H20 VLP 43 VLP H21 H21 H 0 1 N N N -2.923 -11.978 14.862 -4.392 -0.968 0.995 H21 VLP 44 VLP H22 H22 H 0 1 N N N -1.879 -12.599 16.186 -4.353 -1.505 -0.701 H22 VLP 45 VLP H23 H23 H 0 1 N N N -0.014 -11.356 15.139 -3.133 0.561 -1.327 H23 VLP 46 VLP H24 H24 H 0 1 N N N -1.102 -11.070 13.739 -3.172 1.098 0.370 H24 VLP 47 VLP H25 H25 H 0 1 N N N -1.292 -13.438 13.291 -1.895 -0.920 1.038 H25 VLP 48 VLP H26 H26 H 0 1 N N N 0.454 -13.075 13.503 -1.856 -1.456 -0.659 H26 VLP 49 VLP H27 H27 H 0 1 N N N 0.333 -13.926 15.879 -0.636 0.610 -1.285 H27 VLP 50 VLP H28 H28 H 0 1 N N N -1.406 -14.310 15.646 -0.675 1.146 0.412 H28 VLP 51 VLP H29 H29 H 0 1 N N N -0.857 -16.039 14.037 0.642 -1.408 -0.617 H29 VLP 52 VLP H30 H30 H 0 1 N N N 0.883 -15.600 14.106 0.603 -0.871 1.079 H30 VLP 53 VLP H31 H31 H 0 1 N N N 3.560 -16.427 12.818 9.355 0.804 -1.117 H31 VLP 54 VLP H32 H32 H 0 1 N N N 3.134 -17.156 11.233 9.316 1.341 0.580 H32 VLP 55 VLP H33 H33 H 0 1 N N N 5.360 -16.931 10.412 10.594 -0.677 1.247 H33 VLP 56 VLP H34 H34 H 0 1 N N N 6.013 -16.588 12.051 10.633 -1.214 -0.449 H34 VLP 57 VLP H35 H35 H 0 1 N N N 5.515 -14.655 10.176 11.814 1.390 0.622 H35 VLP 58 VLP H36 H36 H 0 1 N N N 5.467 -14.360 11.947 11.853 0.853 -1.075 H36 VLP 59 VLP H37 H37 H 0 1 N N N -4.403 -9.237 20.675 -10.287 -1.895 -0.182 H37 VLP 60 VLP H38 H38 H 0 1 N N N -7.100 -10.791 18.610 -9.172 0.612 2.600 H38 VLP 61 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VLP C19 C18 SING N N 1 VLP C18 C17 SING N N 2 VLP C17 C16 SING N N 3 VLP C16 C15 SING N N 4 VLP C15 C14 SING N N 5 VLP C14 C13 SING N N 6 VLP C07 C06 SING N N 7 VLP C07 C08 SING N N 8 VLP C12 C13 SING N N 9 VLP C12 C11 SING N N 10 VLP C06 C05 SING N N 11 VLP C09 C08 SING N N 12 VLP C09 C10 SING N N 13 VLP C11 C10 SING N N 14 VLP C05 C04 SING N N 15 VLP C04 O01 SING N N 16 VLP C04 O04 DOUB N N 17 VLP O01 C02 SING N N 18 VLP C03 C02 SING N N 19 VLP C03 O03 SING N N 20 VLP C02 C01 SING N N 21 VLP C01 O02 SING N N 22 VLP C11 H1 SING N N 23 VLP C11 H2 SING N N 24 VLP C10 H3 SING N N 25 VLP C10 H4 SING N N 26 VLP C15 H5 SING N N 27 VLP C15 H6 SING N N 28 VLP C12 H7 SING N N 29 VLP C12 H8 SING N N 30 VLP C13 H9 SING N N 31 VLP C13 H10 SING N N 32 VLP C14 H11 SING N N 33 VLP C14 H12 SING N N 34 VLP C19 H13 SING N N 35 VLP C19 H14 SING N N 36 VLP C19 H15 SING N N 37 VLP C01 H16 SING N N 38 VLP C01 H17 SING N N 39 VLP C02 H18 SING N N 40 VLP C03 H19 SING N N 41 VLP C03 H20 SING N N 42 VLP C05 H21 SING N N 43 VLP C05 H22 SING N N 44 VLP C06 H23 SING N N 45 VLP C06 H24 SING N N 46 VLP C07 H25 SING N N 47 VLP C07 H26 SING N N 48 VLP C08 H27 SING N N 49 VLP C08 H28 SING N N 50 VLP C09 H29 SING N N 51 VLP C09 H30 SING N N 52 VLP C16 H31 SING N N 53 VLP C16 H32 SING N N 54 VLP C17 H33 SING N N 55 VLP C17 H34 SING N N 56 VLP C18 H35 SING N N 57 VLP C18 H36 SING N N 58 VLP O02 H37 SING N N 59 VLP O03 H38 SING N N 60 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VLP SMILES ACDLabs 12.01 "C(CCCCCCC(OC(CO)CO)=O)CCCCCCCC" VLP InChI InChI 1.03 "InChI=1S/C19H38O4/c1-2-3-4-5-6-7-8-9-10-11-12-13-14-15-19(22)23-18(16-20)17-21/h18,20-21H,2-17H2,1H3" VLP InChIKey InChI 1.03 BBNYCLAREVXOSG-UHFFFAOYSA-N VLP SMILES_CANONICAL CACTVS 3.385 "CCCCCCCCCCCCCCCC(=O)OC(CO)CO" VLP SMILES CACTVS 3.385 "CCCCCCCCCCCCCCCC(=O)OC(CO)CO" VLP SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCCCCCCCCCCCCCC(=O)OC(CO)CO" VLP SMILES "OpenEye OEToolkits" 2.0.7 "CCCCCCCCCCCCCCCC(=O)OC(CO)CO" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier VLP "SYSTEMATIC NAME" ACDLabs 12.01 "1,3-dihydroxypropan-2-yl hexadecanoate" VLP "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "1,3-bis(oxidanyl)propan-2-yl hexadecanoate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VLP "Create component" 2020-08-27 RCSB VLP "Initial release" 2021-03-10 RCSB ##