data_VLU # _chem_comp.id VLU _chem_comp.name "(1R,2S)-2-{[N-({2-[(3-chlorophenyl)sulfanyl]-2-methylpropoxy}carbonyl)-L-leucyl]amino}-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H36 Cl N3 O8 S2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-08-30 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 594.141 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VLU _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8E61 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VLU C02 C1 C 0 1 N N N N N N -21.439 -3.782 1.859 -0.767 -0.312 -0.360 C02 VLU 1 VLU C04 C2 C 0 1 N N S N N N -20.946 -5.444 3.630 1.660 -0.092 -0.337 C04 VLU 2 VLU C05 C3 C 0 1 N N N N N N -21.653 -6.697 4.143 1.985 0.734 -1.583 C05 VLU 3 VLU C06 C4 C 0 1 N N N N N N -23.175 -6.559 4.183 1.018 0.363 -2.709 C06 VLU 4 VLU C07 C5 C 0 1 N N N N N N -23.829 -7.645 5.035 1.262 1.275 -3.913 C07 VLU 5 VLU C08 C6 C 0 1 N N N N N N -23.623 -5.174 4.655 1.246 -1.094 -3.118 C08 VLU 6 VLU C09 C7 C 0 1 N N N N N N -19.443 -5.670 3.600 2.687 0.183 0.730 C09 VLU 7 VLU C11 C8 C 0 1 N N S N N N -17.273 -5.516 4.869 4.987 0.189 1.535 C11 VLU 8 VLU C12 C9 C 0 1 N N N N N N -16.557 -4.161 4.934 6.203 -0.714 1.318 C12 VLU 9 VLU C13 C10 C 0 1 N N S N N N -16.615 -3.408 3.577 5.795 -2.175 1.515 C13 VLU 10 VLU C14 C11 C 0 1 N N N N N N -15.925 -2.133 3.692 4.831 -2.607 0.432 C14 VLU 11 VLU C16 C12 C 0 1 N N N N N N -15.010 -3.201 1.739 6.896 -3.491 -0.161 C16 VLU 12 VLU C17 C13 C 0 1 N N N N N N -15.874 -4.215 2.511 7.015 -3.107 1.331 C17 VLU 13 VLU C19 C14 C 0 1 N N R N N N -17.036 -6.368 6.129 5.420 1.655 1.461 C19 VLU 14 VLU C23 C15 C 0 1 N N N N N N -22.702 -2.133 0.732 -3.125 -0.651 -0.505 C23 VLU 15 VLU C24 C16 C 0 1 N N N N N N -24.173 -2.075 0.295 -4.417 -0.147 0.141 C24 VLU 16 VLU C25 C17 C 0 1 N N N N N N -25.070 -2.295 1.515 -4.387 -0.444 1.641 C25 VLU 17 VLU C26 C18 C 0 1 N N N N N N -24.491 -3.153 -0.739 -4.542 1.362 -0.078 C26 VLU 18 VLU C28 C19 C 0 1 Y N N N N N -23.547 -0.262 -1.960 -7.215 -0.200 0.152 C28 VLU 19 VLU C29 C20 C 0 1 Y N N N N N -24.161 -0.465 -3.191 -7.012 0.729 1.166 C29 VLU 20 VLU C30 C21 C 0 1 Y N N N N N -23.424 -0.342 -4.358 -8.094 1.348 1.760 C30 VLU 21 VLU C31 C22 C 0 1 Y N N N N N -22.077 -0.017 -4.294 -9.379 1.044 1.349 C31 VLU 22 VLU C32 C23 C 0 1 Y N N N N N -21.465 0.185 -3.061 -9.586 0.119 0.340 C32 VLU 23 VLU C34 C24 C 0 1 Y N N N N N -22.203 0.064 -1.897 -8.508 -0.504 -0.259 C34 VLU 24 VLU N03 N1 N 0 1 N N N N N N -21.418 -5.152 2.297 0.331 0.275 0.158 N03 VLU 25 VLU N10 N2 N 0 1 N N N N N N -18.697 -5.316 4.791 3.988 -0.079 0.497 N10 VLU 26 VLU N15 N3 N 0 1 N N N N N N -14.935 -2.016 2.555 5.472 -3.346 -0.489 N15 VLU 27 VLU O01 O1 O 0 1 N N N N N N -20.797 -2.974 2.452 -0.654 -1.145 -1.237 O01 VLU 28 VLU O18 O2 O 0 1 N N N N N N -16.088 -1.325 4.550 3.652 -2.327 0.400 O18 VLU 29 VLU O20 O3 O 0 1 N N N N N N -17.761 -7.536 5.919 4.310 2.496 1.778 O20 VLU 30 VLU O21 O4 O 0 1 N N N N N N -18.903 -6.119 2.647 2.343 0.641 1.800 O21 VLU 31 VLU O22 O5 O 0 1 N N N N N N -22.223 -3.447 0.748 -1.988 0.021 0.099 O22 VLU 32 VLU S27 S1 S 0 1 N N N N N N -24.510 -0.426 -0.430 -5.837 -0.987 -0.614 S27 VLU 33 VLU CL33 CL1 CL 0 0 N N N N N N -19.732 0.605 -2.961 -11.201 -0.259 -0.172 CL33 VLU 34 VLU S2 S2 S 0 1 N Y N N N N -17.783 -5.560 7.554 6.002 2.029 -0.216 S2 VLU 35 VLU H1 H1 H 0 1 N N N N N N -21.171 -4.604 4.304 1.674 -1.152 -0.590 H1 VLU 36 VLU H2 H2 H 0 1 N N N N N N -21.396 -7.538 3.482 1.885 1.795 -1.353 H2 VLU 37 VLU H3 H3 H 0 1 N N N N N N -21.295 -6.908 5.161 3.008 0.527 -1.900 H3 VLU 38 VLU H4 H4 H 0 1 N N N N N N -23.541 -6.687 3.154 -0.008 0.486 -2.361 H4 VLU 39 VLU H5 H5 H 0 1 N N N N N N -24.920 -7.505 5.034 2.287 1.151 -4.260 H5 VLU 40 VLU H7 H7 H 0 1 N N N N N N -23.586 -8.634 4.619 0.572 1.010 -4.714 H7 VLU 41 VLU H8 H8 H 0 1 N N N N N N -24.722 -5.127 4.666 1.072 -1.743 -2.260 H8 VLU 42 VLU H9 H9 H 0 1 N N N N N N -23.238 -4.990 5.669 0.557 -1.358 -3.919 H9 VLU 43 VLU H10 H10 H 0 1 N N N N N N -23.230 -4.408 3.970 2.272 -1.217 -3.465 H10 VLU 44 VLU H11 H11 H 0 1 N N N N N N -16.915 -6.070 3.989 4.555 -0.013 2.515 H11 VLU 45 VLU H12 H12 H 0 1 N N N N N N -15.504 -4.328 5.203 6.581 -0.576 0.305 H12 VLU 46 VLU H13 H13 H 0 1 N N N N N N -17.038 -3.541 5.705 6.982 -0.454 2.035 H13 VLU 47 VLU H14 H14 H 0 1 N N N N N N -17.664 -3.264 3.278 5.350 -2.316 2.500 H14 VLU 48 VLU H15 H15 H 0 1 N N N N N N -14.003 -3.611 1.572 7.495 -2.817 -0.773 H15 VLU 49 VLU H16 H16 H 0 1 N N N N N N -15.476 -2.966 0.771 7.214 -4.523 -0.311 H16 VLU 50 VLU H17 H17 H 0 1 N N N N N N -16.590 -4.702 1.833 7.946 -2.573 1.523 H17 VLU 51 VLU H18 H18 H 0 1 N N N N N N -15.238 -4.979 2.983 6.933 -3.987 1.968 H18 VLU 52 VLU H19 H19 H 0 1 N N N N N N -15.966 -6.522 6.330 6.226 1.832 2.173 H19 VLU 53 VLU H20 H20 H 0 1 N N N N N N -22.097 -1.541 0.030 -3.036 -1.727 -0.349 H20 VLU 54 VLU H21 H21 H 0 1 N N N N N N -22.612 -1.708 1.742 -3.146 -0.440 -1.574 H21 VLU 55 VLU H22 H22 H 0 1 N N N N N N -24.855 -1.527 2.272 -3.752 0.285 2.143 H22 VLU 56 VLU H23 H23 H 0 1 N N N N N N -26.125 -2.226 1.212 -5.398 -0.383 2.044 H23 VLU 57 VLU H24 H24 H 0 1 N N N N N N -24.875 -3.291 1.938 -3.990 -1.446 1.806 H24 VLU 58 VLU H25 H25 H 0 1 N N N N N N -24.290 -4.145 -0.309 -4.353 1.594 -1.127 H25 VLU 59 VLU H26 H26 H 0 1 N N N N N N -25.551 -3.085 -1.025 -5.547 1.686 0.190 H26 VLU 60 VLU H27 H27 H 0 1 N N N N N N -23.861 -3.005 -1.628 -3.813 1.881 0.545 H27 VLU 61 VLU H28 H28 H 0 1 N N N N N N -25.210 -0.718 -3.237 -6.009 0.966 1.488 H28 VLU 62 VLU H29 H29 H 0 1 N N N N N N -23.898 -0.499 -5.316 -7.937 2.070 2.548 H29 VLU 63 VLU H30 H30 H 0 1 N N N N N N -21.502 0.079 -5.203 -10.223 1.530 1.816 H30 VLU 64 VLU H31 H31 H 0 1 N N N N N N -21.731 0.224 -0.939 -8.669 -1.222 -1.049 H31 VLU 65 VLU H32 H32 H 0 1 N N N N N N -21.724 -5.887 1.691 0.240 0.939 0.858 H32 VLU 66 VLU H33 H33 H 0 1 N N N N N N -19.181 -4.925 5.574 4.264 -0.444 -0.358 H33 VLU 67 VLU H34 H34 H 0 1 N N N N N N -14.325 -1.240 2.395 5.049 -3.734 -1.271 H34 VLU 68 VLU H35 H35 H 0 1 N N N N N N -17.657 -8.112 6.667 3.554 2.391 1.184 H35 VLU 69 VLU O1 O6 O 0 1 N Y N N N N -17.108 -6.550 8.905 7.219 1.346 -0.486 O1 VLU 70 VLU O2 O7 O 0 1 N Y N N N N ? ? ? 4.921 1.992 -1.139 O2 VLU 71 VLU O3 O8 O 0 1 N Y N N N N ? ? ? 6.399 3.497 -0.162 O3 VLU 72 VLU H6 H6 H 0 1 N N N N N N -23.452 -7.579 6.066 1.099 2.312 -3.621 H6 VLU 73 VLU H36 H36 H 0 1 N Y N N N N ? ? ? 6.734 3.845 -0.999 H36 VLU 74 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VLU C30 C31 DOUB Y N 1 VLU C30 C29 SING Y N 2 VLU C31 C32 SING Y N 3 VLU C29 C28 DOUB Y N 4 VLU C32 CL33 SING N N 5 VLU C32 C34 DOUB Y N 6 VLU C28 C34 SING Y N 7 VLU C28 S27 SING N N 8 VLU C26 C24 SING N N 9 VLU S27 C24 SING N N 10 VLU C24 C23 SING N N 11 VLU C24 C25 SING N N 12 VLU C23 O22 SING N N 13 VLU O22 C02 SING N N 14 VLU C16 C17 SING N N 15 VLU C16 N15 SING N N 16 VLU C02 N03 SING N N 17 VLU C02 O01 DOUB N N 18 VLU N03 C04 SING N N 19 VLU C17 C13 SING N N 20 VLU N15 C14 SING N N 21 VLU O21 C09 DOUB N N 22 VLU C13 C14 SING N N 23 VLU C13 C12 SING N N 24 VLU C09 C04 SING N N 25 VLU C09 N10 SING N N 26 VLU C04 C05 SING N N 27 VLU C14 O18 DOUB N N 28 VLU C05 C06 SING N N 29 VLU C06 C08 SING N N 30 VLU C06 C07 SING N N 31 VLU N10 C11 SING N N 32 VLU C11 C12 SING N N 33 VLU C11 C19 SING N N 34 VLU O20 C19 SING N N 35 VLU C19 S2 SING N N 36 VLU C04 H1 SING N N 37 VLU C05 H2 SING N N 38 VLU C05 H3 SING N N 39 VLU C06 H4 SING N N 40 VLU C07 H5 SING N N 41 VLU C07 H7 SING N N 42 VLU C08 H8 SING N N 43 VLU C08 H9 SING N N 44 VLU C08 H10 SING N N 45 VLU C11 H11 SING N N 46 VLU C12 H12 SING N N 47 VLU C12 H13 SING N N 48 VLU C13 H14 SING N N 49 VLU C16 H15 SING N N 50 VLU C16 H16 SING N N 51 VLU C17 H17 SING N N 52 VLU C17 H18 SING N N 53 VLU C19 H19 SING N N 54 VLU C23 H20 SING N N 55 VLU C23 H21 SING N N 56 VLU C25 H22 SING N N 57 VLU C25 H23 SING N N 58 VLU C25 H24 SING N N 59 VLU C26 H25 SING N N 60 VLU C26 H26 SING N N 61 VLU C26 H27 SING N N 62 VLU C29 H28 SING N N 63 VLU C30 H29 SING N N 64 VLU C31 H30 SING N N 65 VLU C34 H31 SING N N 66 VLU N03 H32 SING N N 67 VLU N10 H33 SING N N 68 VLU N15 H34 SING N N 69 VLU O20 H35 SING N N 70 VLU S2 O1 DOUB N N 71 VLU S2 O2 DOUB N N 72 VLU S2 O3 SING N N 73 VLU C07 H6 SING N N 74 VLU O3 H36 SING N N 75 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VLU SMILES ACDLabs 12.01 "CC(C)CC(NC(=O)OCC(C)(C)Sc1cccc(Cl)c1)C(=O)NC(CC1CCNC1=O)C(O)S(=O)(=O)O" VLU InChI InChI 1.06 "InChI=1S/C24H36ClN3O8S2/c1-14(2)10-18(28-23(32)36-13-24(3,4)37-17-7-5-6-16(25)12-17)21(30)27-19(22(31)38(33,34)35)11-15-8-9-26-20(15)29/h5-7,12,14-15,18-19,22,31H,8-11,13H2,1-4H3,(H,26,29)(H,27,30)(H,28,32)(H,33,34,35)/t15-,18-,19-,22+/m0/s1" VLU InChIKey InChI 1.06 MOYGJNHMYWCTOO-SXTKRDDTSA-N VLU SMILES_CANONICAL CACTVS 3.385 "CC(C)C[C@H](NC(=O)OCC(C)(C)Sc1cccc(Cl)c1)C(=O)N[C@@H](C[C@@H]2CCNC2=O)[C@H](O)[S](O)(=O)=O" VLU SMILES CACTVS 3.385 "CC(C)C[CH](NC(=O)OCC(C)(C)Sc1cccc(Cl)c1)C(=O)N[CH](C[CH]2CCNC2=O)[CH](O)[S](O)(=O)=O" VLU SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)C[C@@H](C(=O)N[C@@H](C[C@@H]1CCNC1=O)[C@H](O)S(=O)(=O)O)NC(=O)OCC(C)(C)Sc2cccc(c2)Cl" VLU SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)CC(C(=O)NC(CC1CCNC1=O)C(O)S(=O)(=O)O)NC(=O)OCC(C)(C)Sc2cccc(c2)Cl" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier VLU "SYSTEMATIC NAME" ACDLabs 12.01 "(1R,2S)-2-{[N-({2-[(3-chlorophenyl)sulfanyl]-2-methylpropoxy}carbonyl)-L-leucyl]amino}-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid" VLU "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(1~{R},2~{S})-2-[[(2~{S})-2-[[2-(3-chlorophenyl)sulfanyl-2-methyl-propoxy]carbonylamino]-4-methyl-pentanoyl]amino]-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propane-1-sulfonic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VLU "Create component" 2022-08-30 RCSB VLU "Initial release" 2022-09-07 RCSB VLU "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id VLU _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C19 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #