data_VM2 # _chem_comp.id VM2 _chem_comp.name "(1R,2S,3S,4R,5R)-4-(cyclohexylmethylamino)-5-(hydroxymethyl)cyclopentane-1,2,3-triol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H25 N O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2013-01-17 _chem_comp.pdbx_modified_date 2014-09-05 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 259.342 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VM2 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3ZJ6 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VM2 C1 C1 C 0 1 N N N -19.318 37.732 20.548 -2.707 -0.254 -0.421 C1 VM2 1 VM2 C2 C2 C 0 1 N N N -18.335 38.584 19.709 -3.884 0.372 -1.172 C2 VM2 2 VM2 C3 C3 C 0 1 N N N -17.748 39.858 20.346 -5.195 -0.206 -0.637 C3 VM2 3 VM2 C4 C4 C 0 1 N N N -18.507 40.310 21.607 -5.319 0.104 0.856 C4 VM2 4 VM2 C5 C5 C 0 1 N N N -18.580 39.163 22.628 -4.142 -0.522 1.606 C5 VM2 5 VM2 C6 C6 C 0 1 N N N -19.000 37.786 22.050 -2.830 0.057 1.072 C6 VM2 6 VM2 C2B C2B C 0 1 N N S -18.193 34.025 17.147 1.433 1.399 0.022 C2B VM2 7 VM2 C3B C3B C 0 1 N N S -17.250 32.805 17.334 2.972 1.275 0.141 C3B VM2 8 VM2 C4B C4B C 0 1 N N R -16.715 33.027 18.738 3.179 -0.251 0.307 C4B VM2 9 VM2 C5B C5B C 0 1 N N R -18.049 33.314 19.470 2.127 -0.880 -0.630 C5B VM2 10 VM2 C6B C6B C 0 1 N N N -17.938 33.698 20.965 1.552 -2.148 0.005 C6B VM2 11 VM2 O2B O2B O 0 1 N N N -19.314 33.687 16.288 1.080 2.606 -0.658 O2B VM2 12 VM2 O3B O3B O 0 1 N N N -16.243 32.557 16.327 3.449 1.979 1.289 O3B VM2 13 VM2 O4B O4B O 0 1 N N N -16.021 31.919 19.335 4.497 -0.624 -0.099 O4B VM2 14 VM2 O6B O6B O 0 1 N N N -16.788 34.543 21.207 2.573 -3.144 0.090 O6B VM2 15 VM2 CAR CAR C 0 1 N N R -18.714 34.358 18.571 1.017 0.169 -0.811 CAR VM2 16 VM2 N2B N2B N 0 1 N N N -18.534 35.765 19.041 -0.262 -0.362 -0.321 N2B VM2 17 VM2 C7B C7B C 0 1 N N N -19.353 36.247 20.169 -1.395 0.325 -0.956 C7B VM2 18 VM2 H1 H1 H 0 1 N N N -20.328 38.143 20.401 -2.714 -1.334 -0.570 H1 VM2 19 VM2 H21C H21C H 0 0 N N N -17.489 37.935 19.439 -3.876 1.452 -1.024 H21C VM2 20 VM2 H22C H22C H 0 0 N N N -18.867 38.891 18.796 -3.796 0.151 -2.236 H22C VM2 21 VM2 H61C H61C H 0 0 N N N -19.899 37.458 22.592 -1.992 -0.389 1.606 H61C VM2 22 VM2 H62C H62C H 0 0 N N N -18.178 37.080 22.242 -2.822 1.137 1.220 H62C VM2 23 VM2 H7B1 H7B1 H 0 0 N N N -19.036 35.682 21.058 -1.348 0.182 -2.036 H7B1 VM2 24 VM2 H7B2 H7B2 H 0 0 N N N -20.399 36.002 19.932 -1.349 1.390 -0.728 H7B2 VM2 25 VM2 H31C H31C H 0 0 N N N -16.701 39.662 20.620 -6.034 0.240 -1.172 H31C VM2 26 VM2 H32C H32C H 0 0 N N N -17.787 40.670 19.605 -5.203 -1.286 -0.785 H32C VM2 27 VM2 H41C H41C H 0 0 N N N -17.983 41.165 22.059 -5.311 1.184 1.004 H41C VM2 28 VM2 H42C H42C H 0 0 N N N -19.527 40.612 21.327 -6.253 -0.308 1.237 H42C VM2 29 VM2 H51C H51C H 0 0 N N N -17.586 39.051 23.085 -4.230 -0.300 2.670 H51C VM2 30 VM2 H52C H52C H 0 0 N N N -19.309 39.443 23.402 -4.149 -1.602 1.458 H52C VM2 31 VM2 H2B H2B H 0 1 N N N -17.626 34.878 16.747 0.970 1.369 1.008 H2B VM2 32 VM2 H3B H3B H 0 1 N N N -17.899 31.918 17.380 3.460 1.635 -0.765 H3B VM2 33 VM2 HA HA H 0 1 N N N -19.877 34.446 16.187 1.369 3.411 -0.207 HA VM2 34 VM2 HAR HAR H 0 1 N N N -19.793 34.145 18.573 0.930 0.442 -1.863 HAR VM2 35 VM2 H4B H4B H 0 1 N N N -16.091 33.933 18.756 2.998 -0.550 1.340 H4B VM2 36 VM2 HB HB H 0 1 N N N -15.740 31.787 16.564 4.407 1.932 1.409 HB VM2 37 VM2 H5B H5B H 0 1 N N N -18.655 32.397 19.414 2.579 -1.117 -1.593 H5B VM2 38 VM2 HC HC H 0 1 N N N -15.729 32.160 20.206 5.201 -0.210 0.420 HC VM2 39 VM2 H6B1 H6B1 H 0 0 N N N -18.848 34.237 21.265 1.183 -1.919 1.005 H6B1 VM2 40 VM2 H6B2 H6B2 H 0 0 N N N -17.841 32.781 21.564 0.732 -2.521 -0.609 H6B2 VM2 41 VM2 H6B H6B H 0 1 N N N -16.745 34.763 22.130 2.279 -3.976 0.484 H6B VM2 42 VM2 HD HD H 0 1 N N N -18.726 36.362 18.262 -0.318 -0.298 0.684 HD VM2 43 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VM2 C1 C2 SING N N 1 VM2 C1 C6 SING N N 2 VM2 C1 C7B SING N N 3 VM2 C2 C3 SING N N 4 VM2 C3 C4 SING N N 5 VM2 C4 C5 SING N N 6 VM2 C5 C6 SING N N 7 VM2 C2B C3B SING N N 8 VM2 C2B O2B SING N N 9 VM2 C2B CAR SING N N 10 VM2 C3B C4B SING N N 11 VM2 C3B O3B SING N N 12 VM2 C4B C5B SING N N 13 VM2 C4B O4B SING N N 14 VM2 C5B C6B SING N N 15 VM2 C5B CAR SING N N 16 VM2 C6B O6B SING N N 17 VM2 N2B C7B SING N N 18 VM2 N2B CAR SING N N 19 VM2 C1 H1 SING N N 20 VM2 C2 H21C SING N N 21 VM2 C2 H22C SING N N 22 VM2 C6 H61C SING N N 23 VM2 C6 H62C SING N N 24 VM2 C7B H7B1 SING N N 25 VM2 C7B H7B2 SING N N 26 VM2 C3 H31C SING N N 27 VM2 C3 H32C SING N N 28 VM2 C4 H41C SING N N 29 VM2 C4 H42C SING N N 30 VM2 C5 H51C SING N N 31 VM2 C5 H52C SING N N 32 VM2 C2B H2B SING N N 33 VM2 C3B H3B SING N N 34 VM2 O2B HA SING N N 35 VM2 CAR HAR SING N N 36 VM2 C4B H4B SING N N 37 VM2 O3B HB SING N N 38 VM2 C5B H5B SING N N 39 VM2 O4B HC SING N N 40 VM2 C6B H6B1 SING N N 41 VM2 C6B H6B2 SING N N 42 VM2 O6B H6B SING N N 43 VM2 N2B HD SING N N 44 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VM2 SMILES ACDLabs 12.01 "OC2C(NCC1CCCCC1)C(C(O)C2O)CO" VM2 InChI InChI 1.03 "InChI=1S/C13H25NO4/c15-7-9-10(12(17)13(18)11(9)16)14-6-8-4-2-1-3-5-8/h8-18H,1-7H2/t9-,10+,11+,12-,13-/m0/s1" VM2 InChIKey InChI 1.03 PETSRUBXPDOLKZ-QWQWKMKNSA-N VM2 SMILES_CANONICAL CACTVS 3.385 "OC[C@@H]1[C@@H](O)[C@H](O)[C@@H](O)[C@@H]1NCC2CCCCC2" VM2 SMILES CACTVS 3.385 "OC[CH]1[CH](O)[CH](O)[CH](O)[CH]1NCC2CCCCC2" VM2 SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "C1CCC(CC1)CN[C@@H]2[C@@H]([C@H]([C@@H]([C@H]2O)O)O)CO" VM2 SMILES "OpenEye OEToolkits" 1.9.2 "C1CCC(CC1)CNC2C(C(C(C2O)O)O)CO" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier VM2 "SYSTEMATIC NAME" ACDLabs 12.01 "(1R,2S,3S,4R,5R)-4-[(cyclohexylmethyl)amino]-5-(hydroxymethyl)cyclopentane-1,2,3-triol" VM2 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "(1R,2S,3S,4R,5R)-4-(cyclohexylmethylamino)-5-(hydroxymethyl)cyclopentane-1,2,3-triol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VM2 "Create component" 2013-01-17 EBI VM2 "Initial release" 2014-01-29 RCSB VM2 "Modify descriptor" 2014-09-05 RCSB #