data_VM9 # _chem_comp.id VM9 _chem_comp.name "(6M)-6-(6-chloro-4-[(1R,5S)-3,8-diazabicyclo[3.2.1]octan-3-yl]-8-fluoro-2-{[(2R,4R,7aS)-2-fluorotetrahydro-1H-pyrrolizin-7a(5H)-yl]methoxy}quinazolin-7-yl)-4-methyl-5-(trifluoromethyl)pyridin-2-amine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C29 H31 Cl F5 N7 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-09-13 _chem_comp.pdbx_modified_date 2023-11-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 624.048 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VM9 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8TXE _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VM9 C14 C1 C 0 1 Y N N N N N -2.448 22.617 -5.356 1.733 2.404 -0.031 C14 VM9 1 VM9 C3 C2 C 0 1 Y N N N N N -6.892 26.844 -7.202 6.260 -2.023 -0.888 C3 VM9 2 VM9 C15 C3 C 0 1 Y N N N N N -1.826 23.172 -4.214 0.467 1.808 -0.100 C15 VM9 3 VM9 C12 C4 C 0 1 Y N N N N N -4.208 24.274 -5.259 2.754 0.260 -0.408 C12 VM9 4 VM9 C2 C5 C 0 1 Y N N N N N -7.429 26.033 -6.208 5.510 -2.200 0.262 C2 VM9 5 VM9 C7 C6 C 0 1 Y N N N N N -6.606 25.121 -5.529 4.355 -1.450 0.423 C7 VM9 6 VM9 C20 C7 C 0 1 Y N N N N N -2.443 24.256 -3.557 0.353 0.414 -0.327 C20 VM9 7 VM9 C21 C8 C 0 1 Y N N N N N -3.600 24.788 -4.116 1.515 -0.356 -0.481 C21 VM9 8 VM9 C13 C9 C 0 1 Y N N N N N -3.618 23.177 -5.863 2.851 1.643 -0.189 C13 VM9 9 VM9 C6 C10 C 0 1 Y N N N N N -5.269 25.068 -5.881 3.987 -0.547 -0.570 C6 VM9 10 VM9 C16 C11 C 0 1 Y N N N N N -0.609 22.750 -3.654 -0.723 2.561 0.053 C16 VM9 11 VM9 C4 C12 C 0 1 Y N N N N N -5.550 26.715 -7.518 5.840 -1.099 -1.840 C4 VM9 12 VM9 C18 C13 C 0 1 Y N N N N N -0.768 24.334 -1.995 -1.944 0.616 -0.239 C18 VM9 13 VM9 C27 C14 C 0 1 N N N N N N 3.590 25.616 0.853 -5.357 -2.242 -2.864 C27 VM9 14 VM9 C37 C15 C 0 1 N N N N N N 0.017 19.403 -2.488 -3.004 2.617 0.899 C37 VM9 15 VM9 C38 C16 C 0 1 N N N N N N 1.231 20.186 -1.969 -3.040 2.868 -0.624 C38 VM9 16 VM9 C26 C17 C 0 1 N N N N N N 2.535 24.758 1.531 -5.406 -1.182 -1.733 C26 VM9 17 VM9 C33 C18 C 0 1 N N N N N N 0.046 25.386 1.868 -5.351 -1.579 0.750 C33 VM9 18 VM9 C35 C19 C 0 1 N N N N N N -0.382 20.483 -4.735 -1.263 4.261 1.579 C35 VM9 19 VM9 C40 C20 C 0 1 N N N N N N 1.654 21.760 -3.934 -1.320 4.658 -0.820 C40 VM9 20 VM9 C28 C21 C 0 1 N N N N N N 2.943 26.985 0.780 -5.478 -3.561 -2.062 C28 VM9 21 VM9 C30 C22 C 0 1 N N N N N N 0.458 27.590 0.992 -5.426 -3.943 0.322 C30 VM9 22 VM9 C36 C23 C 0 1 N N S N N N 0.226 19.276 -3.994 -2.780 4.015 1.523 C36 VM9 23 VM9 C39 C24 C 0 1 N N R N N N 2.094 20.479 -3.194 -2.835 4.394 -0.775 C39 VM9 24 VM9 C31 C25 C 0 1 N N R N N N -0.003 26.856 2.230 -5.262 -2.940 1.490 C31 VM9 25 VM9 C25 C26 C 0 1 N N S N N N 1.229 25.247 0.895 -4.638 -1.867 -0.586 C25 VM9 26 VM9 C1 C27 C 0 1 N N N N N N -8.883 26.198 -5.886 5.939 -3.188 1.316 C1 VM9 27 VM9 C24 C28 C 0 1 N N N N N N 0.878 24.379 -0.284 -3.187 -1.384 -0.540 C24 VM9 28 VM9 C8 C29 C 0 1 N N N N N N -7.145 24.230 -4.468 3.508 -1.611 1.659 C8 VM9 29 VM9 N19 N1 N 0 1 Y N N N N N -1.931 24.834 -2.453 -0.871 -0.132 -0.388 N19 VM9 30 VM9 N5 N2 N 0 1 Y N N N N N -4.747 25.846 -6.866 4.730 -0.402 -1.661 N5 VM9 31 VM9 N17 N3 N 0 1 Y N N N N N -0.075 23.342 -2.569 -1.883 1.926 -0.024 N17 VM9 32 VM9 N34 N4 N 0 1 N N N N N N 0.206 21.726 -4.224 -0.675 3.921 0.276 N34 VM9 33 VM9 N43 N5 N 0 1 N N N N N N -5.010 27.500 -8.544 6.588 -0.915 -2.997 N43 VM9 34 VM9 N41 N6 N 0 1 N N N N N N 1.728 19.328 -4.097 -3.335 4.954 0.510 N41 VM9 35 VM9 N29 N7 N 0 1 N N N N N N 1.512 26.681 0.382 -4.713 -3.326 -0.818 N29 VM9 36 VM9 O23 O1 O 0 1 N N N N N N -0.289 24.979 -0.871 -3.161 0.026 -0.308 O23 VM9 37 VM9 F22 F1 F 0 1 N N N N N N -4.192 25.809 -3.467 1.426 -1.688 -0.693 F22 VM9 38 VM9 F32 F2 F 0 1 N N N N N N 0.906 27.064 3.236 -6.302 -3.076 2.416 F32 VM9 39 VM9 F9 F3 F 0 1 N N N N N N -8.302 23.648 -4.867 2.684 -2.733 1.516 F9 VM9 40 VM9 F10 F4 F 0 1 N N N N N N -6.321 23.184 -4.174 4.337 -1.780 2.773 F10 VM9 41 VM9 F11 F5 F 0 1 N N N N N N -7.381 24.881 -3.314 2.718 -0.470 1.834 F11 VM9 42 VM9 CL42 CL1 CL 0 0 N N N N N N -4.359 22.544 -7.267 4.416 2.391 -0.102 CL42 VM9 43 VM9 H1 H1 H 0 1 N N N N N N -2.013 21.754 -5.838 1.821 3.467 0.142 H1 VM9 44 VM9 H2 H2 H 0 1 N N N N N N -7.511 27.562 -7.719 7.164 -2.593 -1.043 H2 VM9 45 VM9 H3 H3 H 0 1 N N N N N N 3.818 25.235 -0.153 -6.198 -2.123 -3.547 H3 VM9 46 VM9 H4 H4 H 0 1 N N N N N N 4.513 25.649 1.451 -4.410 -2.197 -3.402 H4 VM9 47 VM9 H5 H5 H 0 1 N N N N N N -0.913 19.950 -2.274 -3.952 2.198 1.237 H5 VM9 48 VM9 H6 H6 H 0 1 N N N N N N -0.027 18.408 -2.021 -2.182 1.949 1.154 H6 VM9 49 VM9 H7 H7 H 0 1 N N N N N N 1.793 19.583 -1.241 -2.234 2.326 -1.117 H7 VM9 50 VM9 H8 H8 H 0 1 N N N N N N 0.907 21.125 -1.496 -4.005 2.571 -1.035 H8 VM9 51 VM9 H9 H9 H 0 1 N N N N N N 2.700 23.691 1.323 -4.902 -0.265 -2.041 H9 VM9 52 VM9 H10 H10 H 0 1 N N N N N N 2.531 24.923 2.619 -6.436 -0.975 -1.441 H10 VM9 53 VM9 H11 H11 H 0 1 N N N N N N -0.891 25.077 1.382 -6.391 -1.300 0.579 H11 VM9 54 VM9 H12 H12 H 0 1 N N N N N N 0.212 24.773 2.766 -4.831 -0.801 1.308 H12 VM9 55 VM9 H13 H13 H 0 1 N N N N N N -1.470 20.500 -4.574 -1.072 5.311 1.802 H13 VM9 56 VM9 H14 H14 H 0 1 N N N N N N -0.172 20.395 -5.811 -0.821 3.636 2.354 H14 VM9 57 VM9 H15 H15 H 0 1 N N N N N N 2.210 21.839 -4.880 -0.918 4.318 -1.774 H15 VM9 58 VM9 H16 H16 H 0 1 N N N N N N 1.875 22.634 -3.304 -1.132 5.725 -0.704 H16 VM9 59 VM9 H17 H17 H 0 1 N N N N N N 3.436 27.613 0.023 -6.522 -3.769 -1.831 H17 VM9 60 VM9 H18 H18 H 0 1 N N N N N N 2.980 27.490 1.757 -5.043 -4.387 -2.625 H18 VM9 61 VM9 H19 H19 H 0 1 N N N N N N 0.892 28.565 1.257 -4.972 -4.900 0.579 H19 VM9 62 VM9 H20 H20 H 0 1 N N N N N N -0.379 27.739 0.294 -6.481 -4.077 0.083 H20 VM9 63 VM9 H21 H21 H 0 1 N N N N N N -0.177 18.327 -4.378 -3.252 4.114 2.500 H21 VM9 64 VM9 H22 H22 H 0 1 N N N N N N 3.166 20.495 -2.950 -3.351 4.799 -1.646 H22 VM9 65 VM9 H23 H23 H 0 1 N N N N N N -1.025 27.156 2.504 -4.293 -3.058 1.974 H23 VM9 66 VM9 H24 H24 H 0 1 N N N N N N -9.477 25.516 -6.512 6.586 -2.691 2.038 H24 VM9 67 VM9 H25 H25 H 0 1 N N N N N N -9.052 25.963 -4.825 5.059 -3.580 1.826 H25 VM9 68 VM9 H26 H26 H 0 1 N N N N N N -9.187 27.236 -6.085 6.482 -4.008 0.846 H26 VM9 69 VM9 H27 H27 H 0 1 N N N N N N 0.658 23.353 0.046 -2.659 -1.894 0.266 H27 VM9 70 VM9 H28 H28 H 0 1 N N N N N N 1.706 24.361 -1.008 -2.700 -1.604 -1.490 H28 VM9 71 VM9 H29 H29 H 0 1 N N N N N N -4.039 27.287 -8.651 7.398 -1.430 -3.138 H29 VM9 72 VM9 H30 H30 H 0 1 N N N N N N -5.490 27.307 -9.400 6.300 -0.273 -3.664 H30 VM9 73 VM9 H31 H31 H 0 1 N N N N N N 2.139 18.475 -3.776 -4.344 4.958 0.535 H31 VM9 74 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VM9 N43 C4 SING N N 1 VM9 C4 C3 DOUB Y N 2 VM9 C4 N5 SING Y N 3 VM9 CL42 C13 SING N N 4 VM9 C3 C2 SING Y N 5 VM9 N5 C6 DOUB Y N 6 VM9 C2 C1 SING N N 7 VM9 C2 C7 DOUB Y N 8 VM9 C6 C7 SING Y N 9 VM9 C6 C12 SING N N 10 VM9 C13 C14 DOUB Y N 11 VM9 C13 C12 SING Y N 12 VM9 C7 C8 SING N N 13 VM9 C14 C15 SING Y N 14 VM9 C12 C21 DOUB Y N 15 VM9 F9 C8 SING N N 16 VM9 C35 N34 SING N N 17 VM9 C35 C36 SING N N 18 VM9 C8 F10 SING N N 19 VM9 C8 F11 SING N N 20 VM9 N34 C40 SING N N 21 VM9 N34 C16 SING N N 22 VM9 C15 C16 DOUB Y N 23 VM9 C15 C20 SING Y N 24 VM9 C21 C20 SING Y N 25 VM9 C21 F22 SING N N 26 VM9 N41 C36 SING N N 27 VM9 N41 C39 SING N N 28 VM9 C36 C37 SING N N 29 VM9 C40 C39 SING N N 30 VM9 C16 N17 SING Y N 31 VM9 C20 N19 DOUB Y N 32 VM9 C39 C38 SING N N 33 VM9 N17 C18 DOUB Y N 34 VM9 C37 C38 SING N N 35 VM9 N19 C18 SING Y N 36 VM9 C18 O23 SING N N 37 VM9 O23 C24 SING N N 38 VM9 C24 C25 SING N N 39 VM9 N29 C28 SING N N 40 VM9 N29 C25 SING N N 41 VM9 N29 C30 SING N N 42 VM9 C28 C27 SING N N 43 VM9 C27 C26 SING N N 44 VM9 C25 C26 SING N N 45 VM9 C25 C33 SING N N 46 VM9 C30 C31 SING N N 47 VM9 C33 C31 SING N N 48 VM9 C31 F32 SING N N 49 VM9 C14 H1 SING N N 50 VM9 C3 H2 SING N N 51 VM9 C27 H3 SING N N 52 VM9 C27 H4 SING N N 53 VM9 C37 H5 SING N N 54 VM9 C37 H6 SING N N 55 VM9 C38 H7 SING N N 56 VM9 C38 H8 SING N N 57 VM9 C26 H9 SING N N 58 VM9 C26 H10 SING N N 59 VM9 C33 H11 SING N N 60 VM9 C33 H12 SING N N 61 VM9 C35 H13 SING N N 62 VM9 C35 H14 SING N N 63 VM9 C40 H15 SING N N 64 VM9 C40 H16 SING N N 65 VM9 C28 H17 SING N N 66 VM9 C28 H18 SING N N 67 VM9 C30 H19 SING N N 68 VM9 C30 H20 SING N N 69 VM9 C36 H21 SING N N 70 VM9 C39 H22 SING N N 71 VM9 C31 H23 SING N N 72 VM9 C1 H24 SING N N 73 VM9 C1 H25 SING N N 74 VM9 C1 H26 SING N N 75 VM9 C24 H27 SING N N 76 VM9 C24 H28 SING N N 77 VM9 N43 H29 SING N N 78 VM9 N43 H30 SING N N 79 VM9 N41 H31 SING N N 80 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VM9 SMILES ACDLabs 12.01 "FC1CC2(CCCN2C1)COc1nc2c(F)c(c3nc(N)cc(C)c3C(F)(F)F)c(Cl)cc2c(n1)N1CC2CCC(N2)C1" VM9 InChI InChI 1.06 "InChI=1S/C29H31ClF5N7O/c1-14-7-20(36)38-25(22(14)29(33,34)35)21-19(30)8-18-24(23(21)32)39-27(40-26(18)41-11-16-3-4-17(12-41)37-16)43-13-28-5-2-6-42(28)10-15(31)9-28/h7-8,15-17,37H,2-6,9-13H2,1H3,(H2,36,38)/t15-,16-,17+,28+/m1/s1" VM9 InChIKey InChI 1.06 YODMLRHFGATDGU-SBYGXYMLSA-N VM9 SMILES_CANONICAL CACTVS 3.385 "Cc1cc(N)nc(c2c(Cl)cc3c(nc(OC[C@@]45CCCN4C[C@H](F)C5)nc3c2F)N6C[C@@H]7CC[C@H](C6)N7)c1C(F)(F)F" VM9 SMILES CACTVS 3.385 "Cc1cc(N)nc(c2c(Cl)cc3c(nc(OC[C]45CCCN4C[CH](F)C5)nc3c2F)N6C[CH]7CC[CH](C6)N7)c1C(F)(F)F" VM9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1cc(nc(c1C(F)(F)F)c2c(cc3c(c2F)nc(nc3N4C[C@H]5CC[C@@H](C4)N5)OC[C@@]67CCCN6C[C@@H](C7)F)Cl)N" VM9 SMILES "OpenEye OEToolkits" 2.0.7 "Cc1cc(nc(c1C(F)(F)F)c2c(cc3c(c2F)nc(nc3N4CC5CCC(C4)N5)OCC67CCCN6CC(C7)F)Cl)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier VM9 "SYSTEMATIC NAME" ACDLabs 12.01 "(6M)-6-(6-chloro-4-[(1R,5S)-3,8-diazabicyclo[3.2.1]octan-3-yl]-8-fluoro-2-{[(2R,4R,7aS)-2-fluorotetrahydro-1H-pyrrolizin-7a(5H)-yl]methoxy}quinazolin-7-yl)-4-methyl-5-(trifluoromethyl)pyridin-2-amine" VM9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "6-[6-chloranyl-4-[(1~{S},5~{R})-3,8-diazabicyclo[3.2.1]octan-3-yl]-8-fluoranyl-2-[[(2~{R},8~{S})-2-fluoranyl-1,2,3,5,6,7-hexahydropyrrolizin-8-yl]methoxy]quinazolin-7-yl]-4-methyl-5-(trifluoromethyl)pyridin-2-amine" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VM9 "Create component" 2023-09-13 RCSB VM9 "Initial release" 2023-11-08 RCSB #