data_VMA # _chem_comp.id VMA _chem_comp.name "1-methyl-5-phenyl-6-{[(1R)-1-(pyridin-2-yl)ethyl]sulfanyl}-1,5-dihydro-4H-pyrazolo[3,4-d]pyrimidin-4-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C19 H17 N5 O S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-08-27 _chem_comp.pdbx_modified_date 2020-12-25 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 363.436 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VMA _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7JWU _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VMA C5 C1 C 0 1 Y N N 36.857 -17.075 14.856 -2.006 1.962 0.041 C5 VMA 1 VMA C6 C2 C 0 1 Y N N 36.650 -16.327 16.083 -3.125 1.115 0.064 C6 VMA 2 VMA C21 C3 C 0 1 Y N N 41.167 -17.939 10.400 4.166 1.145 1.168 C21 VMA 3 VMA C24 C4 C 0 1 Y N N 43.613 -17.414 11.052 5.337 -0.204 -0.883 C24 VMA 4 VMA O11 O1 O 0 1 N N N 37.750 -15.136 17.818 -3.862 -1.058 0.085 O11 VMA 5 VMA C1 C5 C 0 1 N N N 37.858 -15.792 16.759 -2.918 -0.287 0.066 C1 VMA 6 VMA C7 C6 C 0 1 Y N N 35.236 -16.333 16.280 -4.270 1.939 0.080 C7 VMA 7 VMA N8 N1 N 0 1 Y N N 34.653 -17.023 15.255 -3.881 3.183 0.068 N8 VMA 8 VMA N9 N2 N 0 1 Y N N 35.679 -17.479 14.383 -2.482 3.236 0.043 N9 VMA 9 VMA C10 C7 C 0 1 N N N 35.243 -18.263 13.197 -1.670 4.456 0.024 C10 VMA 10 VMA N4 N3 N 0 1 N N N 38.097 -17.280 14.349 -0.776 1.430 0.016 N4 VMA 11 VMA C3 C8 C 0 1 N N N 39.221 -16.781 14.984 -0.598 0.128 0.014 C3 VMA 12 VMA N2 N4 N 0 1 N N N 39.124 -16.058 16.164 -1.648 -0.747 0.045 N2 VMA 13 VMA C12 C9 C 0 1 Y N N 40.287 -15.536 16.773 -1.405 -2.127 0.041 C12 VMA 14 VMA C17 C10 C 0 1 Y N N 41.062 -16.295 17.643 -1.262 -2.812 1.241 C17 VMA 15 VMA C16 C11 C 0 1 Y N N 42.210 -15.754 18.230 -1.023 -4.172 1.234 C16 VMA 16 VMA C15 C12 C 0 1 Y N N 42.581 -14.440 17.942 -0.926 -4.852 0.034 C15 VMA 17 VMA C14 C13 C 0 1 Y N N 41.802 -13.675 17.069 -1.068 -4.173 -1.162 C14 VMA 18 VMA C13 C14 C 0 1 Y N N 40.657 -14.220 16.485 -1.314 -2.814 -1.162 C13 VMA 19 VMA S18 S1 S 0 1 N N N 40.798 -17.102 14.232 1.044 -0.509 -0.018 S18 VMA 20 VMA C19 C15 C 0 1 N N R 40.529 -18.127 12.802 1.982 1.039 -0.038 C19 VMA 21 VMA C26 C16 C 0 1 N N N 40.553 -19.606 13.212 1.698 1.790 -1.341 C26 VMA 22 VMA C20 C17 C 0 1 Y N N 41.523 -17.874 11.695 3.455 0.736 0.056 C20 VMA 23 VMA N25 N5 N 0 1 Y N N 42.807 -17.572 11.957 4.050 0.083 -0.923 N25 VMA 24 VMA C23 C18 C 0 1 Y N N 43.278 -17.418 9.827 6.115 0.183 0.192 C23 VMA 25 VMA C22 C19 C 0 1 Y N N 42.097 -17.699 9.473 5.523 0.867 1.243 C22 VMA 26 VMA H1 H1 H 0 1 N N N 40.153 -18.180 10.117 3.673 1.680 1.966 H1 VMA 27 VMA H2 H2 H 0 1 N N N 44.652 -17.265 11.304 5.789 -0.740 -1.704 H2 VMA 28 VMA H3 H3 H 0 1 N N N 34.713 -15.869 17.103 -5.294 1.597 0.099 H3 VMA 29 VMA H4 H4 H 0 1 N N N 34.147 -18.358 13.202 -1.486 4.754 -1.008 H4 VMA 30 VMA H5 H5 H 0 1 N N N 35.562 -17.747 12.279 -2.201 5.254 0.544 H5 VMA 31 VMA H6 H6 H 0 1 N N N 35.698 -19.264 13.232 -0.719 4.267 0.523 H6 VMA 32 VMA H7 H7 H 0 1 N N N 40.775 -17.312 17.867 -1.336 -2.281 2.178 H7 VMA 33 VMA H8 H8 H 0 1 N N N 42.807 -16.351 18.904 -0.911 -4.705 2.167 H8 VMA 34 VMA H9 H9 H 0 1 N N N 43.466 -14.016 18.392 -0.739 -5.916 0.031 H9 VMA 35 VMA H10 H10 H 0 1 N N N 42.087 -12.658 16.845 -0.992 -4.707 -2.098 H10 VMA 36 VMA H11 H11 H 0 1 N N N 40.058 -13.625 15.811 -1.430 -2.285 -2.096 H11 VMA 37 VMA H12 H12 H 0 1 N N N 39.520 -17.880 12.439 1.683 1.656 0.809 H12 VMA 38 VMA H13 H13 H 0 1 N N N 39.824 -19.775 14.019 0.633 2.009 -1.410 H13 VMA 39 VMA H14 H14 H 0 1 N N N 40.292 -20.231 12.345 2.263 2.722 -1.353 H14 VMA 40 VMA H15 H15 H 0 1 N N N 41.560 -19.872 13.566 1.997 1.173 -2.188 H15 VMA 41 VMA H16 H16 H 0 1 N N N 44.014 -17.177 9.075 7.168 -0.055 0.219 H16 VMA 42 VMA H17 H17 H 0 1 N N N 41.842 -17.745 8.425 6.106 1.181 2.096 H17 VMA 43 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VMA C22 C23 DOUB Y N 1 VMA C22 C21 SING Y N 2 VMA C23 C24 SING Y N 3 VMA C21 C20 DOUB Y N 4 VMA C24 N25 DOUB Y N 5 VMA C20 N25 SING Y N 6 VMA C20 C19 SING N N 7 VMA C19 C26 SING N N 8 VMA C19 S18 SING N N 9 VMA C10 N9 SING N N 10 VMA S18 C3 SING N N 11 VMA N4 C5 SING N N 12 VMA N4 C3 DOUB N N 13 VMA N9 C5 SING Y N 14 VMA N9 N8 SING Y N 15 VMA C5 C6 DOUB Y N 16 VMA C3 N2 SING N N 17 VMA N8 C7 DOUB Y N 18 VMA C6 C7 SING Y N 19 VMA C6 C1 SING N N 20 VMA N2 C1 SING N N 21 VMA N2 C12 SING N N 22 VMA C13 C12 DOUB Y N 23 VMA C13 C14 SING Y N 24 VMA C1 O11 DOUB N N 25 VMA C12 C17 SING Y N 26 VMA C14 C15 DOUB Y N 27 VMA C17 C16 DOUB Y N 28 VMA C15 C16 SING Y N 29 VMA C21 H1 SING N N 30 VMA C24 H2 SING N N 31 VMA C7 H3 SING N N 32 VMA C10 H4 SING N N 33 VMA C10 H5 SING N N 34 VMA C10 H6 SING N N 35 VMA C17 H7 SING N N 36 VMA C16 H8 SING N N 37 VMA C15 H9 SING N N 38 VMA C14 H10 SING N N 39 VMA C13 H11 SING N N 40 VMA C19 H12 SING N N 41 VMA C26 H13 SING N N 42 VMA C26 H14 SING N N 43 VMA C26 H15 SING N N 44 VMA C23 H16 SING N N 45 VMA C22 H17 SING N N 46 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VMA SMILES ACDLabs 12.01 "c12c(cnn1C)C(=O)N(C(=N2)SC(C)c3ccccn3)c4ccccc4" VMA InChI InChI 1.03 "InChI=1S/C19H17N5OS/c1-13(16-10-6-7-11-20-16)26-19-22-17-15(12-21-23(17)2)18(25)24(19)14-8-4-3-5-9-14/h3-13H,1-2H3/t13-/m1/s1" VMA InChIKey InChI 1.03 DFGGDGDTSVXBMC-CYBMUJFWSA-N VMA SMILES_CANONICAL CACTVS 3.385 "C[C@@H](SC1=Nc2n(C)ncc2C(=O)N1c3ccccc3)c4ccccn4" VMA SMILES CACTVS 3.385 "C[CH](SC1=Nc2n(C)ncc2C(=O)N1c3ccccc3)c4ccccn4" VMA SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H](c1ccccn1)SC2=Nc3c(cnn3C)C(=O)N2c4ccccc4" VMA SMILES "OpenEye OEToolkits" 2.0.7 "CC(c1ccccn1)SC2=Nc3c(cnn3C)C(=O)N2c4ccccc4" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier VMA "SYSTEMATIC NAME" ACDLabs 12.01 "1-methyl-5-phenyl-6-{[(1R)-1-(pyridin-2-yl)ethyl]sulfanyl}-1,5-dihydro-4H-pyrazolo[3,4-d]pyrimidin-4-one" VMA "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "1-methyl-5-phenyl-6-[(1~{R})-1-pyridin-2-ylethyl]sulfanyl-pyrazolo[3,4-d]pyrimidin-4-one" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VMA "Create component" 2020-08-27 RCSB VMA "Initial release" 2020-12-30 RCSB ##