data_VMD # _chem_comp.id VMD _chem_comp.name "4-[[1-[3-[[(2~{R})-2-oxidanyl-2-[(4~{S},5~{R})-2,2,5-trimethyl-1,3-dioxolan-4-yl]ethyl]amino]propyl]-1,2,3-triazol-4-yl]methylamino]benzenesulfonamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H32 N6 O5 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-03-20 _chem_comp.pdbx_modified_date 2024-03-22 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 468.570 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VMD _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8OGF _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VMD O1 O1 O 0 1 N N N N N N 3.905 12.054 13.895 7.258 0.655 1.187 O1 VMD 1 VMD C13 C1 C 0 1 Y N N N N N -4.317 4.407 14.601 -5.843 -0.363 0.168 C13 VMD 2 VMD C14 C2 C 0 1 Y N N N N N -5.674 4.348 14.902 -6.695 -1.458 0.249 C14 VMD 3 VMD C15 C3 C 0 1 Y N N N N N -6.202 3.280 15.581 -8.055 -1.286 0.086 C15 VMD 4 VMD C16 C4 C 0 1 Y N N N N N -5.366 2.238 15.969 -8.570 -0.025 -0.158 C16 VMD 5 VMD C21 C5 C 0 1 Y N N N N N -4.011 2.285 15.672 -7.725 1.066 -0.240 C21 VMD 6 VMD C22 C6 C 0 1 Y N N N N N -3.493 3.367 14.985 -6.364 0.901 -0.078 C22 VMD 7 VMD C7 C7 C 0 1 N N N N N N -0.894 10.084 14.541 1.141 -0.925 -0.455 C7 VMD 8 VMD C9 C8 C 0 1 Y N N N N N -2.103 7.886 14.243 -1.244 -0.145 -0.486 C9 VMD 9 VMD C10 C9 C 0 1 Y N N N N N -1.790 6.777 13.509 -2.149 0.173 0.470 C10 VMD 10 VMD C11 C10 C 0 1 N N N N N N -2.553 5.509 13.314 -3.570 0.623 0.251 C11 VMD 11 VMD N4 N1 N 0 1 N N N N N N 0.362 12.531 12.786 4.696 0.360 -0.132 N4 VMD 12 VMD C2 C11 C 0 1 N N R N N N 2.857 12.486 13.027 7.092 0.863 -0.217 C2 VMD 13 VMD C3 C12 C 0 1 N N N N N N 1.511 12.301 13.723 5.973 -0.042 -0.738 C3 VMD 14 VMD C5 C13 C 0 1 N N N N N N -0.536 11.327 12.722 3.597 -0.489 -0.609 C5 VMD 15 VMD C6 C14 C 0 1 N N N N N N -1.228 11.023 13.387 2.287 -0.041 0.042 C6 VMD 16 VMD N8 N2 N 0 1 Y N N N N N -1.038 8.697 14.114 -0.113 -0.496 0.169 N8 VMD 17 VMD N12 N3 N 0 1 N N N N N N -3.805 5.535 13.983 -4.467 -0.533 0.338 N12 VMD 18 VMD S17 S1 S 0 1 N N N N N N -6.023 0.845 16.842 -10.307 0.190 -0.366 S17 VMD 19 VMD O18 O2 O 0 1 N N N N N N -7.458 0.924 16.698 -10.820 -1.069 -0.779 O18 VMD 20 VMD N19 N4 N 0 1 N N N N N N -5.536 -0.461 16.114 -10.946 0.486 1.132 N19 VMD 21 VMD O20 O3 O 0 1 N N N N N N -5.481 0.927 18.179 -10.476 1.383 -1.118 O20 VMD 22 VMD N23 N5 N 0 1 Y N N N N N -0.558 6.960 12.973 -1.533 0.009 1.646 N23 VMD 23 VMD N24 N6 N 0 1 Y N N N N N -0.097 8.131 13.341 -0.328 -0.388 1.433 N24 VMD 24 VMD C25 C15 C 0 1 N N N N N N 0.837 12.681 10.862 9.045 2.579 0.389 C25 VMD 25 VMD C26 C16 C 0 1 N N R N N N 1.712 11.963 10.812 9.566 1.340 -0.343 C26 VMD 26 VMD C27 C17 C 0 1 N N S N N N 2.909 11.707 11.727 8.398 0.526 -0.940 C27 VMD 27 VMD O28 O4 O 0 1 N N N N N N 4.043 12.086 10.950 8.750 -0.851 -0.721 O28 VMD 28 VMD C29 C18 C 0 1 N N N N N N 3.662 12.044 9.577 10.040 -0.862 -0.086 C29 VMD 29 VMD C30 C19 C 0 1 N N N N N N 3.810 10.638 9.056 11.142 -1.011 -1.136 C30 VMD 30 VMD C31 C20 C 0 1 N N N N N N 4.393 12.935 8.409 10.119 -2.007 0.926 C31 VMD 31 VMD O32 O5 O 0 1 N N N N N N 2.285 12.410 9.575 10.166 0.408 0.589 O32 VMD 32 VMD H1 H1 H 0 1 N N N N N N 3.867 12.545 14.707 7.491 -0.252 1.426 H1 VMD 33 VMD H2 H2 H 0 1 N N N N N N -6.322 5.156 14.596 -6.293 -2.442 0.439 H2 VMD 34 VMD H3 H3 H 0 1 N N N N N N -7.256 3.248 15.812 -8.718 -2.136 0.149 H3 VMD 35 VMD H4 H4 H 0 1 N N N N N N -3.362 1.477 15.977 -8.130 2.049 -0.431 H4 VMD 36 VMD H5 H5 H 0 1 N N N N N N -2.440 3.399 14.748 -5.704 1.754 -0.141 H5 VMD 37 VMD H6 H6 H 0 1 N N N N N N 0.142 10.260 14.865 1.058 -0.836 -1.538 H6 VMD 38 VMD H7 H7 H 0 1 N N N N N N -1.578 10.280 15.380 1.342 -1.963 -0.191 H7 VMD 39 VMD H8 H8 H 0 1 N N N N N N -3.007 8.071 14.804 -1.396 -0.127 -1.555 H8 VMD 40 VMD H9 H9 H 0 1 N N N N N N -2.728 5.361 12.238 -3.842 1.351 1.015 H9 VMD 41 VMD H10 H10 H 0 1 N N N N N N -1.957 4.672 13.707 -3.660 1.079 -0.734 H10 VMD 42 VMD H11 H11 H 0 1 N N N N N N 0.720 12.720 11.872 4.504 1.335 -0.308 H11 VMD 43 VMD H13 H13 H 0 1 N N N N N N 2.984 13.554 12.798 6.832 1.905 -0.402 H13 VMD 44 VMD H14 H14 H 0 1 N N N N N N 1.440 13.016 14.556 6.190 -1.077 -0.474 H14 VMD 45 VMD H15 H15 H 0 1 N N N N N N 1.451 11.275 14.115 5.906 0.050 -1.821 H15 VMD 46 VMD H16 H16 H 0 1 N N N N N N -1.093 11.449 11.781 3.513 -0.400 -1.692 H16 VMD 47 VMD H17 H17 H 0 1 N N N N N N 0.153 10.474 12.632 3.798 -1.527 -0.345 H17 VMD 48 VMD H18 H18 H 0 1 N N N N N N -1.636 11.937 13.844 2.086 0.997 -0.222 H18 VMD 49 VMD H19 H19 H 0 1 N N N N N N -2.015 10.523 12.803 2.371 -0.130 1.125 H19 VMD 50 VMD H20 H20 H 0 1 N N N N N N -3.732 6.237 14.692 -4.105 -1.416 0.513 H20 VMD 51 VMD H21 H21 H 0 1 N N N N N N -5.896 -1.263 16.591 -10.368 0.513 1.911 H21 VMD 52 VMD H22 H22 H 0 1 N N N N N N -5.866 -0.459 15.170 -11.900 0.634 1.232 H22 VMD 53 VMD H23 H23 H 0 1 N N N N N N 0.255 12.488 11.775 8.382 2.271 1.197 H23 VMD 54 VMD H24 H24 H 0 1 N N N N N N 1.212 13.715 10.878 9.886 3.137 0.802 H24 VMD 55 VMD H25 H25 H 0 1 N N N N N N 0.194 12.537 9.981 8.498 3.211 -0.310 H25 VMD 56 VMD H26 H26 H 0 1 N N N N N N 1.329 10.955 10.594 10.276 1.623 -1.120 H26 VMD 57 VMD H27 H27 H 0 1 N N N N N N 2.952 10.632 11.958 8.302 0.729 -2.007 H27 VMD 58 VMD H28 H28 H 0 1 N N N N N N 3.350 9.933 9.765 11.094 -0.176 -1.834 H28 VMD 59 VMD H29 H29 H 0 1 N N N N N N 3.310 10.554 8.080 12.115 -1.018 -0.644 H29 VMD 60 VMD H30 H30 H 0 1 N N N N N N 4.878 10.400 8.943 11.003 -1.946 -1.678 H30 VMD 61 VMD H31 H31 H 0 1 N N N N N N 4.350 14.001 8.679 9.965 -2.956 0.413 H31 VMD 62 VMD H32 H32 H 0 1 N N N N N N 5.444 12.623 8.314 11.100 -2.005 1.401 H32 VMD 63 VMD H33 H33 H 0 1 N N N N N N 3.876 12.778 7.451 9.348 -1.875 1.685 H33 VMD 64 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VMD C31 C29 SING N N 1 VMD C30 C29 SING N N 2 VMD O32 C29 SING N N 3 VMD O32 C26 SING N N 4 VMD C29 O28 SING N N 5 VMD C26 C25 SING N N 6 VMD C26 C27 SING N N 7 VMD O28 C27 SING N N 8 VMD C27 C2 SING N N 9 VMD C5 N4 SING N N 10 VMD C5 C6 SING N N 11 VMD N4 C3 SING N N 12 VMD N23 N24 DOUB Y N 13 VMD N23 C10 SING Y N 14 VMD C2 C3 SING N N 15 VMD C2 O1 SING N N 16 VMD C11 C10 SING N N 17 VMD C11 N12 SING N N 18 VMD N24 N8 SING Y N 19 VMD C6 C7 SING N N 20 VMD C10 C9 DOUB Y N 21 VMD N12 C13 SING N N 22 VMD N8 C9 SING Y N 23 VMD N8 C7 SING N N 24 VMD C13 C14 DOUB Y N 25 VMD C13 C22 SING Y N 26 VMD C14 C15 SING Y N 27 VMD C22 C21 DOUB Y N 28 VMD C15 C16 DOUB Y N 29 VMD C21 C16 SING Y N 30 VMD C16 S17 SING N N 31 VMD N19 S17 SING N N 32 VMD O18 S17 DOUB N N 33 VMD S17 O20 DOUB N N 34 VMD O1 H1 SING N N 35 VMD C14 H2 SING N N 36 VMD C15 H3 SING N N 37 VMD C21 H4 SING N N 38 VMD C22 H5 SING N N 39 VMD C7 H6 SING N N 40 VMD C7 H7 SING N N 41 VMD C9 H8 SING N N 42 VMD C11 H9 SING N N 43 VMD C11 H10 SING N N 44 VMD N4 H11 SING N N 45 VMD C2 H13 SING N N 46 VMD C3 H14 SING N N 47 VMD C3 H15 SING N N 48 VMD C5 H16 SING N N 49 VMD C5 H17 SING N N 50 VMD C6 H18 SING N N 51 VMD C6 H19 SING N N 52 VMD N12 H20 SING N N 53 VMD N19 H21 SING N N 54 VMD N19 H22 SING N N 55 VMD C25 H23 SING N N 56 VMD C25 H24 SING N N 57 VMD C25 H25 SING N N 58 VMD C26 H26 SING N N 59 VMD C27 H27 SING N N 60 VMD C30 H28 SING N N 61 VMD C30 H29 SING N N 62 VMD C30 H30 SING N N 63 VMD C31 H31 SING N N 64 VMD C31 H32 SING N N 65 VMD C31 H33 SING N N 66 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VMD InChI InChI 1.06 "InChI=1S/C20H32N6O5S/c1-14-19(31-20(2,3)30-14)18(27)12-22-9-4-10-26-13-16(24-25-26)11-23-15-5-7-17(8-6-15)32(21,28)29/h5-8,13-14,18-19,22-23,27H,4,9-12H2,1-3H3,(H2,21,28,29)/t14-,18-,19-/m1/s1" VMD InChIKey InChI 1.06 FIIMEVMRINWZGW-NIKGAXFTSA-N VMD SMILES_CANONICAL CACTVS 3.385 "C[C@H]1OC(C)(C)O[C@H]1[C@H](O)CNCCCn2cc(CNc3ccc(cc3)[S](N)(=O)=O)nn2" VMD SMILES CACTVS 3.385 "C[CH]1OC(C)(C)O[CH]1[CH](O)CNCCCn2cc(CNc3ccc(cc3)[S](N)(=O)=O)nn2" VMD SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H]1[C@@H](OC(O1)(C)C)[C@@H](CNCCCn2cc(nn2)CNc3ccc(cc3)S(=O)(=O)N)O" VMD SMILES "OpenEye OEToolkits" 2.0.7 "CC1C(OC(O1)(C)C)C(CNCCCn2cc(nn2)CNc3ccc(cc3)S(=O)(=O)N)O" # _pdbx_chem_comp_identifier.comp_id VMD _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "4-[[1-[3-[[(2~{R})-2-oxidanyl-2-[(4~{S},5~{R})-2,2,5-trimethyl-1,3-dioxolan-4-yl]ethyl]amino]propyl]-1,2,3-triazol-4-yl]methylamino]benzenesulfonamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VMD "Create component" 2023-03-20 PDBE VMD "Initial release" 2024-03-27 RCSB #