data_VMM # _chem_comp.id VMM _chem_comp.name "ETX0462 (Bound form)" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C10 H16 N6 O7 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ;(4R,7S)-7-(N'-hydroxy-N-methylcarbamimidoyl)-1-methyl-4-[(sulfooxy)amino]-1,4,5,7-tetrahydro-6H-pyrazolo[3,4-c]pyridine-6-carboxylic acid ; _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-08-27 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 364.335 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VMM _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7JWL _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VMM C16 C1 C 0 1 Y N N N N N 4.658 3.269 -17.515 -0.304 -0.839 -0.004 C16 VMM 1 VMM C17 C2 C 0 1 Y N N N N N 3.891 2.158 -17.069 -0.859 -2.060 -0.384 C17 VMM 2 VMM C20 C3 C 0 1 N N N N N N 6.417 1.964 -14.596 2.476 -3.062 0.587 C20 VMM 3 VMM C21 C4 C 0 1 Y N N N N N 5.706 3.320 -16.636 0.973 -1.069 0.396 C21 VMM 4 VMM C22 C5 C 0 1 N N N N N N 6.007 6.623 -17.257 1.993 2.320 0.067 C22 VMM 5 VMM C01 C6 C 0 1 N N N N N N 9.180 6.030 -16.353 4.564 -0.217 -1.885 C01 VMM 6 VMM C03 C7 C 0 1 N N N N N N 8.151 3.789 -17.055 3.232 -0.092 0.182 C03 VMM 7 VMM C06 C8 C 0 1 N N S N N N 6.780 4.343 -16.695 1.906 0.009 0.892 C06 VMM 8 VMM C08 C9 C 0 1 N N N N N N 5.851 4.850 -18.962 -0.160 1.468 0.875 C08 VMM 9 VMM C09 C10 C 0 1 N N R N N N 4.483 4.194 -18.690 -0.961 0.518 -0.023 C09 VMM 10 VMM N02 N1 N 0 1 N N N N N N 9.174 4.658 -16.849 3.275 -0.118 -1.195 N02 VMM 11 VMM N04 N2 N 0 1 N N N N N N 8.186 2.592 -17.482 4.327 -0.156 0.864 N04 VMM 12 VMM N07 N3 N 0 1 N N N N N N 6.245 5.350 -17.642 1.274 1.307 0.591 N07 VMM 13 VMM N10 N4 N 0 1 N N N N N N 3.527 5.325 -18.457 -2.336 0.405 0.483 N10 VMM 14 VMM N18 N5 N 0 1 Y N N N N N 4.423 1.592 -16.003 0.051 -2.990 -0.222 N18 VMM 15 VMM N19 N6 N 0 1 Y N N N N N 5.576 2.322 -15.729 1.217 -2.383 0.269 N19 VMM 16 VMM O05 O1 O 0 1 N N N N N N 9.592 2.280 -17.736 5.572 -0.252 0.197 O05 VMM 17 VMM O11 O2 O 0 1 N N N N N N 2.288 4.803 -17.885 -3.276 0.147 -0.608 O11 VMM 18 VMM O13 O3 O 0 1 N N N N N N 0.263 5.096 -16.440 -4.701 -0.686 1.076 O13 VMM 19 VMM O14 O4 O 0 1 N N N N N N 2.506 6.245 -15.737 -5.226 1.420 0.156 O14 VMM 20 VMM O15 O5 O 0 1 N N N N N N 1.221 7.129 -17.848 -5.458 -0.425 -1.292 O15 VMM 21 VMM O23 O6 O 0 1 N N N N N N 6.258 7.061 -16.131 3.156 2.145 -0.237 O23 VMM 22 VMM S12 S1 S 0 1 N N N N N N 1.503 5.939 -16.888 -4.725 0.018 -0.159 S12 VMM 23 VMM H1 H1 H 0 1 N N N N N N 2.983 1.819 -17.545 -1.863 -2.213 -0.749 H1 VMM 24 VMM H2 H2 H 0 1 N N N N N N 5.984 1.096 -14.077 2.501 -3.302 1.650 H2 VMM 25 VMM H3 H3 H 0 1 N N N N N N 7.426 1.711 -14.954 2.549 -3.981 0.006 H3 VMM 26 VMM H4 H4 H 0 1 N N N N N N 6.477 2.814 -13.901 3.313 -2.409 0.342 H4 VMM 27 VMM H6 H6 H 0 1 N N N N N N 10.213 6.406 -16.326 4.399 -0.223 -2.963 H6 VMM 28 VMM H7 H7 H 0 1 N N N N N N 8.576 6.663 -17.020 5.186 0.638 -1.618 H7 VMM 29 VMM H8 H8 H 0 1 N N N N N N 8.755 6.055 -15.339 5.065 -1.138 -1.589 H8 VMM 30 VMM H9 H9 H 0 1 N N N N N N 6.860 4.813 -15.704 2.053 -0.093 1.967 H9 VMM 31 VMM H10 H10 H 0 1 N N N N N N 6.575 4.112 -19.338 -0.457 2.497 0.673 H10 VMM 32 VMM H11 H11 H 0 1 N N N N N N 5.758 5.674 -19.685 -0.353 1.231 1.921 H11 VMM 33 VMM H12 H12 H 0 1 N N N N N N 4.173 3.618 -19.575 -0.978 0.905 -1.042 H12 VMM 34 VMM H13 H13 H 0 1 N N N N N N 10.078 4.295 -17.076 2.453 -0.070 -1.707 H13 VMM 35 VMM H14 H14 H 0 1 N N N N N N 3.936 5.982 -17.824 -2.402 -0.307 1.194 H14 VMM 36 VMM H15 H15 H 0 1 N N N N N N 9.666 1.390 -18.059 6.334 -0.294 0.790 H15 VMM 37 VMM OX OX O 0 1 N N N N N N 6.025 7.538 -18.250 1.421 3.525 -0.118 OX VMM 38 VMM H5 H5 H 0 1 N N N N N N 2.190 5.858 -14.929 -6.145 1.452 0.454 H5 VMM 39 VMM H16 H16 H 0 1 N N N N N N 6.236 8.392 -17.891 1.977 4.220 -0.496 H16 VMM 40 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VMM C08 C09 SING N N 1 VMM C08 N07 SING N N 2 VMM C09 N10 SING N N 3 VMM C09 C16 SING N N 4 VMM N10 O11 SING N N 5 VMM O11 S12 SING N N 6 VMM O15 S12 DOUB N N 7 VMM O05 N04 SING N N 8 VMM N07 C22 SING N N 9 VMM N07 C06 SING N N 10 VMM C16 C17 SING Y N 11 VMM C16 C21 DOUB Y N 12 VMM N04 C03 DOUB N Z 13 VMM C22 O23 DOUB N N 14 VMM C17 N18 DOUB Y N 15 VMM C03 N02 SING N N 16 VMM C03 C06 SING N N 17 VMM S12 O13 DOUB N N 18 VMM S12 O14 SING N N 19 VMM N02 C01 SING N N 20 VMM C06 C21 SING N N 21 VMM C21 N19 SING Y N 22 VMM N18 N19 SING Y N 23 VMM N19 C20 SING N N 24 VMM C17 H1 SING N N 25 VMM C20 H2 SING N N 26 VMM C20 H3 SING N N 27 VMM C20 H4 SING N N 28 VMM C01 H6 SING N N 29 VMM C01 H7 SING N N 30 VMM C01 H8 SING N N 31 VMM C06 H9 SING N N 32 VMM C08 H10 SING N N 33 VMM C08 H11 SING N N 34 VMM C09 H12 SING N N 35 VMM N02 H13 SING N N 36 VMM N10 H14 SING N N 37 VMM O05 H15 SING N N 38 VMM C22 OX SING N N 39 VMM O14 H5 SING N N 40 VMM OX H16 SING N N 41 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VMM SMILES ACDLabs 12.01 "c12cnn(C)c1C(C(\NC)=N\O)N(C(=O)O)CC2NOS(=O)(O)=O" VMM InChI InChI 1.03 "InChI=1S/C10H16N6O7S/c1-11-9(13-19)8-7-5(3-12-15(7)2)6(4-16(8)10(17)18)14-23-24(20,21)22/h3,6,8,14,19H,4H2,1-2H3,(H,11,13)(H,17,18)(H,20,21,22)/t6-,8-/m0/s1" VMM InChIKey InChI 1.03 TVYRNFNEBLNAMJ-XPUUQOCRSA-N VMM SMILES_CANONICAL CACTVS 3.385 "CNC(=N/O)\[C@H]1N(C[C@H](NO[S](O)(=O)=O)c2cnn(C)c12)C(O)=O" VMM SMILES CACTVS 3.385 "CNC(=NO)[CH]1N(C[CH](NO[S](O)(=O)=O)c2cnn(C)c12)C(O)=O" VMM SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN/C(=N\O)/[C@@H]1c2c(cnn2C)[C@H](CN1C(=O)O)NOS(=O)(=O)O" VMM SMILES "OpenEye OEToolkits" 2.0.7 "CNC(=NO)C1c2c(cnn2C)C(CN1C(=O)O)NOS(=O)(=O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier VMM "SYSTEMATIC NAME" ACDLabs 12.01 ;(4R,7S)-7-(N'-hydroxy-N-methylcarbamimidoyl)-1-methyl-4-[(sulfooxy)amino]-1,4,5,7-tetrahydro-6H-pyrazolo[3,4-c]pyridine-6-carboxylic acid ; VMM "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 ;(4~{R},7~{S})-1-methyl-7-[(~{Z})-~{N}-methyl-~{N}'-oxidanyl-carbamimidoyl]-4-(sulfooxyamino)-5,7-dihydro-4~{H}-pyrazolo[3,4-c]pyridine-6-carboxylic acid ; # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id VMM _pdbx_chem_comp_synonyms.name ;(4R,7S)-7-(N'-hydroxy-N-methylcarbamimidoyl)-1-methyl-4-[(sulfooxy)amino]-1,4,5,7-tetrahydro-6H-pyrazolo[3,4-c]pyridine-6-carboxylic acid ; _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VMM "Create component" 2020-08-27 RCSB VMM "Initial release" 2021-05-26 RCSB VMM "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id VMM _pdbx_chem_comp_pcm.modified_residue_id SER _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C22 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom OG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #