data_VMO # _chem_comp.id VMO _chem_comp.name "(2~{R},3~{S},4~{R})-2-(hydroxymethyl)-1-methyl-pyrrolidine-3,4-diol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C6 H13 N O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-07-28 _chem_comp.pdbx_modified_date 2024-04-05 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 147.172 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VMO _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8K7H _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VMO CAA C1 C 0 1 N N R N N N -63.509 18.429 -31.531 -0.618 0.190 0.558 CAA VMO 1 VMO CAB C2 C 0 1 N N S N N N -62.639 19.519 -32.107 0.782 0.822 0.708 CAB VMO 2 VMO CAD C3 C 0 1 N N R N N N -61.508 18.696 -32.647 1.773 -0.332 0.455 CAD VMO 3 VMO CAE C4 C 0 1 N N N N N N -62.295 17.651 -33.405 0.888 -1.566 0.174 CAE VMO 4 VMO CAF C5 C 0 1 N N N N N N -64.946 18.935 -31.424 -1.577 1.170 -0.119 CAF VMO 5 VMO CAG C6 C 0 1 N N N N N N -63.092 16.078 -31.777 -1.492 -1.975 -0.141 CAG VMO 6 VMO NAH N1 N 0 1 N N N N N N -63.412 17.319 -32.499 -0.403 -1.003 -0.301 NAH VMO 7 VMO OAJ O1 O 0 1 N N N N N N -63.338 20.151 -33.194 0.965 1.857 -0.261 OAJ VMO 8 VMO OAK O2 O 0 1 N N N N N N -60.718 19.472 -33.556 2.596 -0.041 -0.677 OAK VMO 9 VMO OAL O3 O 0 1 N N N N N N -65.777 17.917 -30.855 -2.884 0.595 -0.177 OAL VMO 10 VMO H1 H1 H 0 1 N N N N N N -63.139 18.123 -30.542 -1.006 -0.109 1.532 H1 VMO 11 VMO H2 H2 H 0 1 N N N N N N -62.304 20.230 -31.337 0.913 1.220 1.714 H2 VMO 12 VMO H3 H3 H 0 1 N N N N N N -60.911 18.246 -31.841 2.390 -0.502 1.337 H3 VMO 13 VMO H4 H4 H 0 1 N N N N N N -62.670 18.057 -34.356 1.339 -2.189 -0.599 H4 VMO 14 VMO H5 H5 H 0 1 N N N N N N -61.676 16.764 -33.604 0.737 -2.141 1.087 H5 VMO 15 VMO H6 H6 H 0 1 N N N N N N -64.972 19.828 -30.783 -1.613 2.097 0.453 H6 VMO 16 VMO H7 H7 H 0 1 N N N N N N -65.318 19.192 -32.427 -1.228 1.380 -1.130 H7 VMO 17 VMO H8 H8 H 0 1 N N N N N N -63.920 15.824 -31.099 -1.594 -2.237 0.912 H8 VMO 18 VMO H9 H9 H 0 1 N N N N N N -62.945 15.261 -32.499 -2.425 -1.539 -0.499 H9 VMO 19 VMO H10 H10 H 0 1 N N N N N N -62.171 16.221 -31.193 -1.266 -2.872 -0.719 H10 VMO 20 VMO H12 H12 H 0 1 N N N N N N -64.054 20.672 -32.850 1.828 2.291 -0.214 H12 VMO 21 VMO H13 H13 H 0 1 N N N N N N -60.227 20.125 -33.072 3.239 -0.733 -0.883 H13 VMO 22 VMO H14 H14 H 0 1 N N N N N N -66.670 18.236 -30.790 -3.546 1.163 -0.595 H14 VMO 23 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VMO OAK CAD SING N N 1 VMO CAE CAD SING N N 2 VMO CAE NAH SING N N 3 VMO OAJ CAB SING N N 4 VMO CAD CAB SING N N 5 VMO NAH CAG SING N N 6 VMO NAH CAA SING N N 7 VMO CAB CAA SING N N 8 VMO CAA CAF SING N N 9 VMO CAF OAL SING N N 10 VMO CAA H1 SING N N 11 VMO CAB H2 SING N N 12 VMO CAD H3 SING N N 13 VMO CAE H4 SING N N 14 VMO CAE H5 SING N N 15 VMO CAF H6 SING N N 16 VMO CAF H7 SING N N 17 VMO CAG H8 SING N N 18 VMO CAG H9 SING N N 19 VMO CAG H10 SING N N 20 VMO OAJ H12 SING N N 21 VMO OAK H13 SING N N 22 VMO OAL H14 SING N N 23 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VMO InChI InChI 1.06 "InChI=1S/C6H13NO3/c1-7-2-5(9)6(10)4(7)3-8/h4-6,8-10H,2-3H2,1H3/t4-,5-,6+/m1/s1" VMO InChIKey InChI 1.06 UBVOJPDDTVFNFJ-PBXRRBTRSA-N VMO SMILES_CANONICAL CACTVS 3.385 "CN1C[C@@H](O)[C@@H](O)[C@H]1CO" VMO SMILES CACTVS 3.385 "CN1C[CH](O)[CH](O)[CH]1CO" VMO SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN1C[C@H]([C@H]([C@H]1CO)O)O" VMO SMILES "OpenEye OEToolkits" 2.0.7 "CN1CC(C(C1CO)O)O" # _pdbx_chem_comp_identifier.comp_id VMO _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{R},3~{S},4~{R})-2-(hydroxymethyl)-1-methyl-pyrrolidine-3,4-diol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VMO "Create component" 2023-07-28 PDBJ VMO "Initial release" 2024-04-10 RCSB #