data_VMV # _chem_comp.id VMV _chem_comp.name "N-[4-({[(6S)-2,4-diamino-5,6,7,8-tetrahydropyrido[3,2-d]pyrimidin-6-yl]methyl}amino)benzene-1-carbonyl]-L-glutamic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H25 N7 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-08-28 _chem_comp.pdbx_modified_date 2021-04-16 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 443.456 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VMV _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7JXF _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VMV C2 C1 C 0 1 Y N N -10.039 20.693 13.688 -8.585 0.009 0.202 C2 VMV 1 VMV C6 C2 C 0 1 N N S -5.395 21.751 14.813 -3.861 1.193 -0.131 C6 VMV 2 VMV C8 C3 C 0 1 N N N -7.675 22.236 16.014 -5.889 2.495 0.460 C8 VMV 3 VMV C4 C4 C 0 1 Y N N -8.136 20.925 12.501 -6.634 -1.204 0.050 C4 VMV 4 VMV C9 C5 C 0 1 N N N -5.117 20.237 14.900 -2.349 1.073 0.065 C9 VMV 5 VMV C12 C6 C 0 1 Y N N -4.950 16.965 18.879 2.223 -0.947 -0.700 C12 VMV 6 VMV C15 C7 C 0 1 Y N N -4.423 18.910 16.968 -0.480 -0.336 -0.735 C15 VMV 7 VMV C16 C8 C 0 1 Y N N -4.291 19.215 18.313 0.005 -1.386 -1.510 C16 VMV 8 VMV C17 C9 C 0 1 Y N N -4.559 18.240 19.263 1.347 -1.689 -1.498 C17 VMV 9 VMV N N1 N 0 1 N N N -5.430 16.485 21.342 4.505 -0.552 0.084 N VMV 10 VMV CA C10 C 0 1 N N S -5.730 15.718 22.564 5.935 -0.871 0.097 CA VMV 11 VMV C C11 C 0 1 N N N -5.252 15.923 19.992 3.662 -1.268 -0.686 C VMV 12 VMV O O1 O 0 1 N N N -5.345 14.766 19.737 4.089 -2.179 -1.370 O VMV 13 VMV CB C12 C 0 1 N N N -5.563 14.219 22.442 6.731 0.373 0.497 CB VMV 14 VMV CG C13 C 0 1 N N N -6.893 13.596 21.958 6.568 1.450 -0.578 CG VMV 15 VMV CD C14 C 0 1 N N N -6.989 12.090 22.233 7.352 2.675 -0.185 CD VMV 16 VMV OE1 O2 O 0 1 N N N -8.071 11.478 22.029 7.978 2.686 0.849 OE1 VMV 17 VMV OE2 O3 O 0 1 N N N -5.983 11.470 22.666 7.355 3.754 -0.983 OE2 VMV 18 VMV C13 C15 C 0 1 Y N N -5.091 16.657 17.531 1.732 0.104 0.080 C13 VMV 19 VMV C14 C16 C 0 1 Y N N -4.821 17.636 16.574 0.389 0.405 0.060 C14 VMV 20 VMV C4A C17 C 0 1 Y N N -7.511 21.493 13.611 -5.897 -0.014 0.184 C4A VMV 21 VMV C7 C18 C 0 1 N N N -6.166 22.207 16.040 -4.419 2.266 0.812 C7 VMV 22 VMV C8A C19 C 0 1 Y N N -8.264 21.626 14.742 -6.590 1.169 0.326 C8A VMV 23 VMV CT C20 C 0 1 N N N -4.791 16.312 23.627 6.194 -1.973 1.092 CT VMV 24 VMV N1 N2 N 0 1 Y N N -9.521 21.221 14.777 -7.921 1.145 0.333 N1 VMV 25 VMV N10 N3 N 0 1 N N N -4.133 19.961 15.971 -1.837 -0.032 -0.749 N10 VMV 26 VMV N3 N4 N 0 1 Y N N -9.385 20.554 12.578 -7.959 -1.150 0.063 N3 VMV 27 VMV N5 N5 N 0 1 N N N -6.103 21.944 13.537 -4.501 -0.088 0.182 N5 VMV 28 VMV NA2 N6 N 0 1 N N N -11.396 20.273 13.728 -9.972 0.032 0.215 NA2 VMV 29 VMV NA4 N7 N 0 1 N N N -7.473 20.729 11.249 -5.982 -2.421 -0.096 NA4 VMV 30 VMV O1 O4 O 0 1 N N N -4.241 15.554 24.474 7.442 -2.432 1.275 O1 VMV 31 VMV O2 O5 O 0 1 N N N -4.540 17.556 23.619 5.278 -2.444 1.724 O2 VMV 32 VMV H61 H1 H 0 1 N N N -4.432 22.282 14.781 -4.078 1.466 -1.164 H61 VMV 33 VMV H82 H2 H 0 1 N N N -8.006 23.282 16.087 -6.364 3.081 1.247 H82 VMV 34 VMV H81 H3 H 0 1 N N N -8.051 21.671 16.880 -5.956 3.035 -0.485 H81 VMV 35 VMV H92 H4 H 0 1 N N N -6.055 19.707 15.122 -1.868 2.002 -0.241 H92 VMV 36 VMV H91 H5 H 0 1 N N N -4.716 19.885 13.938 -2.133 0.880 1.116 H91 VMV 37 VMV H161 H6 H 0 0 N N N -3.982 20.203 18.619 -0.672 -1.959 -2.126 H161 VMV 38 VMV H171 H7 H 0 0 N N N -4.462 18.476 20.313 1.724 -2.499 -2.106 H171 VMV 39 VMV H H8 H 0 1 N N N -5.339 17.476 21.438 4.165 0.175 0.628 H VMV 40 VMV HA H9 H 0 1 N N N -6.766 15.927 22.870 6.244 -1.197 -0.896 HA VMV 41 VMV HB2 H10 H 0 1 N N N -5.295 13.798 23.422 6.361 0.751 1.449 HB2 VMV 42 VMV HB3 H11 H 0 1 N N N -4.767 13.996 21.717 7.786 0.114 0.593 HB3 VMV 43 VMV HG2 H12 H 0 1 N N N -6.982 13.760 20.874 6.938 1.072 -1.531 HG2 VMV 44 VMV HG3 H13 H 0 1 N N N -7.724 14.100 22.474 5.513 1.709 -0.675 HG3 VMV 45 VMV H1 H14 H 0 1 N N N -6.203 10.554 22.787 7.873 4.516 -0.689 H1 VMV 46 VMV H131 H15 H 0 0 N N N -5.406 15.670 17.227 2.406 0.679 0.698 H131 VMV 47 VMV H141 H16 H 0 0 N N N -4.921 17.404 15.524 0.010 1.220 0.660 H141 VMV 48 VMV H72 H17 H 0 1 N N N -5.875 21.539 16.864 -4.341 1.924 1.845 H72 VMV 49 VMV H71 H18 H 0 1 N N N -5.832 23.231 16.263 -3.860 3.193 0.687 H71 VMV 50 VMV H101 H19 H 0 0 N N N -3.276 19.708 15.522 -2.445 -0.552 -1.298 H101 VMV 51 VMV H2 H20 H 0 1 N N N -5.634 21.422 12.825 -4.157 -0.459 1.055 H2 VMV 52 VMV HA21 H21 H 0 0 N N N -11.659 19.909 12.834 -10.442 0.873 0.320 HA21 VMV 53 VMV HA22 H22 H 0 0 N N N -11.504 19.562 14.422 -10.471 -0.794 0.120 HA22 VMV 54 VMV HA42 H23 H 0 0 N N N -8.108 20.316 10.596 -6.495 -3.239 -0.189 HA42 VMV 55 VMV HA41 H24 H 0 0 N N N -7.159 21.611 10.896 -5.012 -2.454 -0.105 HA41 VMV 56 VMV H3 H25 H 0 1 N N N -3.668 16.066 25.033 7.559 -3.140 1.923 H3 VMV 57 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VMV NA4 C4 SING N N 1 VMV C4 N3 DOUB Y N 2 VMV C4 C4A SING Y N 3 VMV N3 C2 SING Y N 4 VMV N5 C4A SING N N 5 VMV N5 C6 SING N N 6 VMV C4A C8A DOUB Y N 7 VMV C2 NA2 SING N N 8 VMV C2 N1 DOUB Y N 9 VMV C8A N1 SING Y N 10 VMV C8A C8 SING N N 11 VMV C6 C9 SING N N 12 VMV C6 C7 SING N N 13 VMV C9 N10 SING N N 14 VMV N10 C15 SING N N 15 VMV C8 C7 SING N N 16 VMV C14 C15 DOUB Y N 17 VMV C14 C13 SING Y N 18 VMV C15 C16 SING Y N 19 VMV C13 C12 DOUB Y N 20 VMV C16 C17 DOUB Y N 21 VMV C12 C17 SING Y N 22 VMV C12 C SING N N 23 VMV O C DOUB N N 24 VMV C N SING N N 25 VMV N CA SING N N 26 VMV CG CD SING N N 27 VMV CG CB SING N N 28 VMV OE1 CD DOUB N N 29 VMV CD OE2 SING N N 30 VMV CB CA SING N N 31 VMV CA CT SING N N 32 VMV O2 CT DOUB N N 33 VMV CT O1 SING N N 34 VMV C6 H61 SING N N 35 VMV C8 H82 SING N N 36 VMV C8 H81 SING N N 37 VMV C9 H92 SING N N 38 VMV C9 H91 SING N N 39 VMV C16 H161 SING N N 40 VMV C17 H171 SING N N 41 VMV N H SING N N 42 VMV CA HA SING N N 43 VMV CB HB2 SING N N 44 VMV CB HB3 SING N N 45 VMV CG HG2 SING N N 46 VMV CG HG3 SING N N 47 VMV OE2 H1 SING N N 48 VMV C13 H131 SING N N 49 VMV C14 H141 SING N N 50 VMV C7 H72 SING N N 51 VMV C7 H71 SING N N 52 VMV N10 H101 SING N N 53 VMV N5 H2 SING N N 54 VMV NA2 HA21 SING N N 55 VMV NA2 HA22 SING N N 56 VMV NA4 HA42 SING N N 57 VMV NA4 HA41 SING N N 58 VMV O1 H3 SING N N 59 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VMV SMILES ACDLabs 12.01 "c2(N)nc3CCC(CNc1ccc(C(NC(C(O)=O)CCC(O)=O)=O)cc1)Nc3c(n2)N" VMV InChI InChI 1.03 "InChI=1S/C20H25N7O5/c21-17-16-13(26-20(22)27-17)6-5-12(24-16)9-23-11-3-1-10(2-4-11)18(30)25-14(19(31)32)7-8-15(28)29/h1-4,12,14,23-24H,5-9H2,(H,25,30)(H,28,29)(H,31,32)(H4,21,22,26,27)/t12-,14-/m0/s1" VMV InChIKey InChI 1.03 NJZPEYYRVZHUEO-JSGCOSHPSA-N VMV SMILES_CANONICAL CACTVS 3.385 "Nc1nc(N)c2N[C@@H](CCc2n1)CNc3ccc(cc3)C(=O)N[C@@H](CCC(O)=O)C(O)=O" VMV SMILES CACTVS 3.385 "Nc1nc(N)c2N[CH](CCc2n1)CNc3ccc(cc3)C(=O)N[CH](CCC(O)=O)C(O)=O" VMV SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1C(=O)N[C@@H](CCC(=O)O)C(=O)O)NC[C@@H]2CCc3c(c(nc(n3)N)N)N2" VMV SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1C(=O)NC(CCC(=O)O)C(=O)O)NCC2CCc3c(c(nc(n3)N)N)N2" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier VMV "SYSTEMATIC NAME" ACDLabs 12.01 "N-[4-({[(6S)-2,4-diamino-5,6,7,8-tetrahydropyrido[3,2-d]pyrimidin-6-yl]methyl}amino)benzene-1-carbonyl]-L-glutamic acid" VMV "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S})-2-[[4-[[(6~{S})-2,4-bis(azanyl)-5,6,7,8-tetrahydropyrido[3,2-d]pyrimidin-6-yl]methylamino]phenyl]carbonylamino]pentanedioic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VMV "Create component" 2020-08-28 RCSB VMV "Initial release" 2021-04-21 RCSB ##