data_VMX # _chem_comp.id VMX _chem_comp.name "5'-{[(3-aminopropyl)sulfonyl]amino}-5'-deoxyadenosine" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H21 N7 O5 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2009-12-30 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 387.415 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VMX _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3KYD _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VMX S S S 0 1 N N N 21.741 25.303 19.920 -4.212 0.360 0.944 S VMX 1 VMX N1 N1 N 0 1 Y N N 21.675 14.743 22.519 6.477 -0.961 0.184 N1 VMX 2 VMX C2 C2 C 0 1 Y N N 20.843 15.348 21.653 6.102 0.302 0.272 C2 VMX 3 VMX N3 N3 N 0 1 Y N N 20.696 16.684 21.609 4.836 0.664 0.279 N3 VMX 4 VMX C4 C4 C 0 1 Y N N 21.398 17.483 22.450 3.871 -0.246 0.198 C4 VMX 5 VMX C5 C5 C 0 1 Y N N 22.278 16.941 23.371 4.219 -1.604 0.103 C5 VMX 6 VMX C6 C6 C 0 1 Y N N 22.412 15.462 23.390 5.583 -1.940 0.098 C6 VMX 7 VMX N6 N6 N 0 1 N N N 23.245 14.848 24.262 5.987 -3.261 0.006 N6 VMX 8 VMX N7 N7 N 0 1 Y N N 22.842 17.954 24.080 3.064 -2.309 0.034 N7 VMX 9 VMX C8 C8 C 0 1 Y N N 22.342 19.129 23.626 2.054 -1.490 0.080 C8 VMX 10 VMX N9 N9 N 0 1 Y N N 21.490 18.787 22.659 2.500 -0.205 0.182 N9 VMX 11 VMX "C1'" C1* C 0 1 N N R 20.765 19.698 21.944 1.667 0.998 0.259 C1* VMX 12 VMX C10 C10 C 0 1 N N N 23.354 27.310 20.490 -5.846 -1.367 -0.408 C10 VMX 13 VMX C11 C11 C 0 1 N N N 24.821 27.567 20.155 -5.982 -2.502 -1.425 C11 VMX 14 VMX N12 N12 N 0 1 N N N 25.561 27.621 21.401 -7.397 -2.868 -1.565 N12 VMX 15 VMX C1S C1S C 0 1 N N N 23.132 25.812 20.673 -4.372 -0.985 -0.262 C1S VMX 16 VMX "C2'" C2* C 0 1 N N R 19.723 20.353 22.810 1.481 1.624 -1.147 C2* VMX 17 VMX "O2'" O2* O 0 1 N N N 18.579 19.504 22.937 2.559 2.510 -1.456 O2* VMX 18 VMX O2S O2S O 0 1 N N N 20.583 25.906 20.529 -4.779 1.559 0.432 O2S VMX 19 VMX "C3'" C3* C 0 1 N N S 19.358 21.670 22.151 0.155 2.405 -0.981 C3* VMX 20 VMX "O3'" O3* O 0 1 N N N 18.056 21.608 21.563 0.416 3.784 -0.712 O3* VMX 21 VMX O3S O3S O 0 1 N N N 21.794 25.649 18.524 -4.529 -0.101 2.250 O3S VMX 22 VMX "C4'" C4* C 0 1 N N R 20.389 21.890 21.065 -0.527 1.739 0.230 C4* VMX 23 VMX "O4'" O4* O 0 1 N N N 21.254 20.756 21.068 0.321 0.660 0.657 O4* VMX 24 VMX "C5'" C5* C 0 1 N N N 21.207 23.138 21.338 -1.897 1.194 -0.178 C5* VMX 25 VMX "N5'" N5* N 0 1 N N N 21.645 23.713 20.083 -2.586 0.670 1.003 N5* VMX 26 VMX H2 H2 H 0 1 N N N 20.272 14.739 20.968 6.861 1.067 0.340 H2 VMX 27 VMX HN6 HN6 H 0 1 N N N 23.196 13.858 24.130 6.932 -3.480 0.004 HN6 VMX 28 VMX HN6A HN6A H 0 0 N N N 24.182 15.159 24.103 5.325 -3.967 -0.056 HN6A VMX 29 VMX H8 H8 H 0 1 N N N 22.581 20.124 23.972 1.015 -1.784 0.043 H8 VMX 30 VMX "H1'" H1* H 0 1 N N N 20.501 18.946 21.186 2.103 1.721 0.947 H1* VMX 31 VMX H10 H10 H 0 1 N N N 23.092 27.836 21.420 -6.413 -0.502 -0.751 H10 VMX 32 VMX H10A H10A H 0 0 N N N 22.720 27.678 19.670 -6.234 -1.696 0.556 H10A VMX 33 VMX H11 H11 H 0 1 N N N 25.210 26.756 19.522 -5.594 -2.173 -2.390 H11 VMX 34 VMX H11A H11A H 0 0 N N N 24.922 28.521 19.616 -5.414 -3.367 -1.082 H11A VMX 35 VMX HN12 HN12 H 0 0 N N N 26.528 27.789 21.208 -7.513 -3.616 -2.232 HN12 VMX 36 VMX HN1A HN1A H 0 0 N Y N 25.202 28.360 21.970 -7.797 -3.115 -0.672 HN1A VMX 37 VMX H1S H1S H 0 1 N N N 23.052 25.595 21.748 -3.985 -0.656 -1.227 H1S VMX 38 VMX H1SA H1SA H 0 0 N N N 23.987 25.272 20.240 -3.805 -1.850 0.081 H1SA VMX 39 VMX "H2'" H2* H 0 1 N N N 20.107 20.530 23.826 1.385 0.850 -1.908 H2* VMX 40 VMX "HO2'" HO2* H 0 0 N N N 17.929 19.928 23.485 2.488 2.927 -2.326 HO2* VMX 41 VMX "H3'" H3* H 0 1 N N N 19.346 22.485 22.890 -0.463 2.302 -1.873 H3* VMX 42 VMX "HO3'" HO3* H 0 0 N N N 17.851 22.442 21.158 0.896 4.238 -1.418 HO3* VMX 43 VMX "H4'" H4* H 0 1 N N N 19.888 22.017 20.094 -0.639 2.464 1.037 H4* VMX 44 VMX "H5'" H5* H 0 1 N N N 20.590 23.869 21.881 -2.490 1.996 -0.620 H5* VMX 45 VMX "H5'A" H5*A H 0 0 N N N 22.085 22.875 21.947 -1.767 0.395 -0.908 H5*A VMX 46 VMX "HN5'" HN5* H 0 0 N N N 20.991 23.403 19.393 -2.091 0.506 1.821 HN5* VMX 47 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VMX S C1S SING N N 1 VMX S O2S DOUB N N 2 VMX S O3S DOUB N N 3 VMX S "N5'" SING N N 4 VMX N1 C2 DOUB Y N 5 VMX N1 C6 SING Y N 6 VMX C2 N3 SING Y N 7 VMX N3 C4 DOUB Y N 8 VMX C4 C5 SING Y N 9 VMX C4 N9 SING Y N 10 VMX C5 C6 DOUB Y N 11 VMX C5 N7 SING Y N 12 VMX C6 N6 SING N N 13 VMX N7 C8 DOUB Y N 14 VMX C8 N9 SING Y N 15 VMX N9 "C1'" SING N N 16 VMX "C1'" "C2'" SING N N 17 VMX "C1'" "O4'" SING N N 18 VMX C10 C11 SING N N 19 VMX C10 C1S SING N N 20 VMX C11 N12 SING N N 21 VMX "C2'" "O2'" SING N N 22 VMX "C2'" "C3'" SING N N 23 VMX "C3'" "O3'" SING N N 24 VMX "C3'" "C4'" SING N N 25 VMX "C4'" "O4'" SING N N 26 VMX "C4'" "C5'" SING N N 27 VMX "C5'" "N5'" SING N N 28 VMX C2 H2 SING N N 29 VMX N6 HN6 SING N N 30 VMX N6 HN6A SING N N 31 VMX C8 H8 SING N N 32 VMX "C1'" "H1'" SING N N 33 VMX C10 H10 SING N N 34 VMX C10 H10A SING N N 35 VMX C11 H11 SING N N 36 VMX C11 H11A SING N N 37 VMX N12 HN12 SING N N 38 VMX N12 HN1A SING N N 39 VMX C1S H1S SING N N 40 VMX C1S H1SA SING N N 41 VMX "C2'" "H2'" SING N N 42 VMX "O2'" "HO2'" SING N N 43 VMX "C3'" "H3'" SING N N 44 VMX "O3'" "HO3'" SING N N 45 VMX "C4'" "H4'" SING N N 46 VMX "C5'" "H5'" SING N N 47 VMX "C5'" "H5'A" SING N N 48 VMX "N5'" "HN5'" SING N N 49 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VMX SMILES_CANONICAL CACTVS 3.352 "NCCC[S](=O)(=O)NC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3c(N)ncnc23" VMX SMILES CACTVS 3.352 "NCCC[S](=O)(=O)NC[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(N)ncnc23" VMX SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CNS(=O)(=O)CCCN)O)O)N" VMX SMILES "OpenEye OEToolkits" 1.7.0 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)CNS(=O)(=O)CCCN)O)O)N" VMX InChI InChI 1.03 "InChI=1S/C13H21N7O5S/c14-2-1-3-26(23,24)19-4-7-9(21)10(22)13(25-7)20-6-18-8-11(15)16-5-17-12(8)20/h5-7,9-10,13,19,21-22H,1-4,14H2,(H2,15,16,17)/t7-,9-,10-,13-/m1/s1" VMX InChIKey InChI 1.03 GCNSCCULRVBOML-QYVSTXNMSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier VMX "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.6.1 "N-[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methyl]-3-azanyl-propane-1-sulfonamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VMX "Create component" 2009-12-30 RCSB VMX "Modify aromatic_flag" 2011-06-04 RCSB VMX "Modify descriptor" 2011-06-04 RCSB #