data_VN0 # _chem_comp.id VN0 _chem_comp.name "(2~{R},3~{S},4~{R},5~{R})-2-(hydroxymethyl)-5-(methylaminomethyl)pyrrolidine-3,4-diol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C7 H16 N2 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-07-31 _chem_comp.pdbx_modified_date 2024-04-05 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 176.214 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VN0 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8K7I _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VN0 CAA C1 C 0 1 N N R N N N 26.763 -18.387 -4.172 -1.223 0.584 -0.531 CAA VN0 1 VN0 CAB C2 C 0 1 N N S N N N 27.769 -19.367 -3.642 -1.480 -0.943 -0.503 CAB VN0 2 VN0 CAC C3 C 0 1 N N R N N N 28.777 -18.445 -3.024 -0.034 -1.505 -0.520 CAC VN0 3 VN0 CAD C4 C 0 1 N N R N N N 27.909 -17.408 -2.351 0.748 -0.479 0.326 CAD VN0 4 VN0 CAF C5 C 0 1 N N N N N N 25.397 -19.034 -4.311 -2.415 1.336 0.064 CAF VN0 5 VN0 CAJ C6 C 0 1 N N N N N N 28.576 -16.041 -2.375 2.136 -0.255 -0.277 CAJ VN0 6 VN0 CAL C7 C 0 1 N N N N N N 29.739 -14.399 -1.183 4.166 1.052 -0.090 CAL VN0 7 VN0 NAE N1 N 0 1 N N N N N N 26.687 -17.329 -3.163 -0.020 0.780 0.306 NAE VN0 8 VN0 NAK N2 N 0 1 N N N N N N 29.468 -15.847 -1.220 2.827 0.809 0.463 NAK VN0 9 VN0 OAG O1 O 0 1 N N N N N N 27.159 -20.172 -2.619 -2.163 -1.325 0.693 OAG VN0 10 VN0 OAH O2 O 0 1 N N N N N N 29.563 -19.131 -2.056 0.013 -2.799 0.084 OAH VN0 11 VN0 OAI O3 O 0 1 N N N N N N 24.577 -18.238 -5.180 -2.209 2.743 -0.077 OAI VN0 12 VN0 H1 H1 H 0 1 N N N N N N 27.093 -17.984 -5.141 -1.034 0.918 -1.551 H1 VN0 13 VN0 H2 H2 H 0 1 N N N N N N 28.211 -19.970 -4.448 -2.033 -1.263 -1.386 H2 VN0 14 VN0 H3 H3 H 0 1 N N N N N N 29.402 -17.978 -3.800 0.354 -1.540 -1.538 H3 VN0 15 VN0 H4 H4 H 0 1 N N N N N N 27.681 -17.706 -1.317 0.843 -0.838 1.351 H4 VN0 16 VN0 H5 H5 H 0 1 N N N N N N 24.922 -19.104 -3.321 -3.325 1.047 -0.460 H5 VN0 17 VN0 H6 H6 H 0 1 N N N N N N 25.510 -20.042 -4.736 -2.510 1.087 1.121 H6 VN0 18 VN0 H7 H7 H 0 1 N N N N N N 29.165 -15.949 -3.299 2.714 -1.177 -0.212 H7 VN0 19 VN0 H8 H8 H 0 1 N N N N N N 27.797 -15.265 -2.358 2.035 0.037 -1.323 H8 VN0 20 VN0 H9 H9 H 0 1 N N N N N N 30.406 -14.172 -0.338 4.655 1.844 0.477 H9 VN0 21 VN0 H10 H10 H 0 1 N N N N N N 30.221 -14.092 -2.123 4.757 0.139 -0.023 H10 VN0 22 VN0 H11 H11 H 0 1 N N N N N N 28.793 -13.852 -1.060 4.079 1.352 -1.134 H11 VN0 23 VN0 H12 H12 H 0 1 N N N N N N 26.630 -16.435 -3.608 0.543 1.541 -0.042 H12 VN0 24 VN0 H14 H14 H 0 1 N N N N N N 29.019 -16.142 -0.376 2.280 1.657 0.472 H14 VN0 25 VN0 H16 H16 H 0 1 N N N N N N 27.795 -20.793 -2.283 -2.346 -2.273 0.756 H16 VN0 26 VN0 H17 H17 H 0 1 N N N N N N 30.194 -18.531 -1.677 -0.525 -3.464 -0.367 H17 VN0 27 VN0 H18 H18 H 0 1 N N N N N N 23.722 -18.642 -5.267 -2.927 3.283 0.280 H18 VN0 28 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VN0 OAI CAF SING N N 1 VN0 CAF CAA SING N N 2 VN0 CAA CAB SING N N 3 VN0 CAA NAE SING N N 4 VN0 CAB CAC SING N N 5 VN0 CAB OAG SING N N 6 VN0 NAE CAD SING N N 7 VN0 CAC CAD SING N N 8 VN0 CAC OAH SING N N 9 VN0 CAJ CAD SING N N 10 VN0 CAJ NAK SING N N 11 VN0 NAK CAL SING N N 12 VN0 CAA H1 SING N N 13 VN0 CAB H2 SING N N 14 VN0 CAC H3 SING N N 15 VN0 CAD H4 SING N N 16 VN0 CAF H5 SING N N 17 VN0 CAF H6 SING N N 18 VN0 CAJ H7 SING N N 19 VN0 CAJ H8 SING N N 20 VN0 CAL H9 SING N N 21 VN0 CAL H10 SING N N 22 VN0 CAL H11 SING N N 23 VN0 NAE H12 SING N N 24 VN0 NAK H14 SING N N 25 VN0 OAG H16 SING N N 26 VN0 OAH H17 SING N N 27 VN0 OAI H18 SING N N 28 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VN0 InChI InChI 1.06 "InChI=1S/C7H16N2O3/c1-8-2-4-6(11)7(12)5(3-10)9-4/h4-12H,2-3H2,1H3/t4-,5-,6-,7+/m1/s1" VN0 InChIKey InChI 1.06 LPOCSFFEUYJDFL-GBNDHIKLSA-N VN0 SMILES_CANONICAL CACTVS 3.385 "CNC[C@H]1N[C@H](CO)[C@H](O)[C@@H]1O" VN0 SMILES CACTVS 3.385 "CNC[CH]1N[CH](CO)[CH](O)[CH]1O" VN0 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CNC[C@@H]1[C@H]([C@H]([C@H](N1)CO)O)O" VN0 SMILES "OpenEye OEToolkits" 2.0.7 "CNCC1C(C(C(N1)CO)O)O" # _pdbx_chem_comp_identifier.comp_id VN0 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{R},3~{S},4~{R},5~{R})-2-(hydroxymethyl)-5-(methylaminomethyl)pyrrolidine-3,4-diol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VN0 "Create component" 2023-07-31 PDBJ VN0 "Initial release" 2024-04-10 RCSB #