data_VN2 # _chem_comp.id VN2 _chem_comp.name "N-[(1S)-2-oxo-1-[3-(trifluoromethyl)phenyl]-2-({4-[4-(trifluoromethyl)phenyl]pyridin-3-yl}amino)ethyl]-4-[4-(trifluoromethyl)phenyl]pyridine-3-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C34 H21 F9 N4 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-09-02 _chem_comp.pdbx_modified_date 2023-04-28 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 688.542 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VN2 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8EAB _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VN2 C11 C1 C 0 1 Y N N 13.240 -19.332 21.227 5.493 4.201 1.802 C11 VN2 1 VN2 C12 C2 C 0 1 Y N N 12.835 -18.133 20.657 5.602 2.825 1.804 C12 VN2 2 VN2 C13 C3 C 0 1 Y N N 11.482 -17.936 20.388 4.552 2.060 1.290 C13 VN2 3 VN2 C14 C4 C 0 1 Y N N 11.096 -16.677 19.764 4.625 0.579 1.273 C14 VN2 4 VN2 C15 C5 C 0 1 Y N N 11.591 -15.470 20.261 5.749 -0.060 0.754 C15 VN2 5 VN2 C16 C6 C 0 1 Y N N 11.245 -14.259 19.664 5.812 -1.438 0.741 C16 VN2 6 VN2 C17 C7 C 0 1 Y N N 10.396 -14.239 18.556 4.761 -2.186 1.241 C17 VN2 7 VN2 C18 C8 C 0 1 Y N N 9.905 -15.447 18.056 3.642 -1.557 1.757 C18 VN2 8 VN2 C19 C9 C 0 1 Y N N 10.251 -16.660 18.654 3.571 -0.179 1.781 C19 VN2 9 VN2 C2 C10 C 0 1 N N N 5.040 -18.926 21.798 -2.488 1.832 0.199 C2 VN2 10 VN2 C20 C11 C 0 1 N N N 10.036 -12.949 17.910 4.835 -3.691 1.224 C20 VN2 11 VN2 C24 C12 C 0 1 Y N N 6.690 -16.990 20.007 0.093 1.395 -1.594 C24 VN2 12 VN2 C25 C13 C 0 1 Y N N 6.577 -15.685 20.506 -0.222 2.346 -2.547 C25 VN2 13 VN2 C26 C14 C 0 1 Y N N 6.230 -14.621 19.669 -0.067 2.057 -3.890 C26 VN2 14 VN2 C27 C15 C 0 1 Y N N 5.994 -14.851 18.313 0.403 0.816 -4.280 C27 VN2 15 VN2 C28 C16 C 0 1 Y N N 6.107 -16.146 17.802 0.717 -0.135 -3.327 C28 VN2 16 VN2 C29 C17 C 0 1 Y N N 6.451 -17.202 18.647 0.568 0.157 -1.984 C29 VN2 17 VN2 C30 C18 C 0 1 N N N 5.865 -16.436 16.365 1.228 -1.487 -3.753 C30 VN2 18 VN2 C34 C19 C 0 1 Y N N 4.005 -18.880 22.834 -3.732 2.602 0.396 C34 VN2 19 VN2 C35 C20 C 0 1 Y N N 4.348 -19.071 24.158 -3.727 3.994 0.307 C35 VN2 20 VN2 C37 C21 C 0 1 Y N N 2.148 -18.894 24.805 -5.991 4.098 0.747 C37 VN2 21 VN2 C38 C22 C 0 1 Y N N 1.716 -18.691 23.504 -6.092 2.726 0.849 C38 VN2 22 VN2 C39 C23 C 0 1 Y N N 2.667 -18.686 22.492 -4.949 1.944 0.672 C39 VN2 23 VN2 C4 C24 C 0 1 N N S 7.067 -18.168 20.885 -0.077 1.710 -0.130 C4 VN2 24 VN2 C40 C25 C 0 1 Y N N 2.220 -18.444 21.138 -5.012 0.467 0.771 C40 VN2 25 VN2 C41 C26 C 0 1 Y N N 1.280 -19.289 20.546 -4.207 -0.208 1.688 C41 VN2 26 VN2 C42 C27 C 0 1 Y N N 0.855 -19.048 19.240 -4.270 -1.584 1.776 C42 VN2 27 VN2 C43 C28 C 0 1 Y N N 1.379 -17.972 18.528 -5.130 -2.293 0.956 C43 VN2 28 VN2 C44 C29 C 0 1 Y N N 2.318 -17.128 19.119 -5.931 -1.628 0.045 C44 VN2 29 VN2 C45 C30 C 0 1 Y N N 2.735 -17.361 20.427 -5.881 -0.253 -0.048 C45 VN2 30 VN2 C46 C31 C 0 1 N N N 0.929 -17.701 17.141 -5.189 -3.796 1.053 C46 VN2 31 VN2 C5 C32 C 0 1 N N N 8.493 -18.119 21.337 1.099 2.523 0.348 C5 VN2 32 VN2 C8 C33 C 0 1 Y N N 10.611 -18.981 20.707 3.425 2.733 0.792 C8 VN2 33 VN2 C9 C34 C 0 1 Y N N 11.106 -20.150 21.248 3.402 4.119 0.829 C9 VN2 34 VN2 F21 F1 F 0 1 N N N 9.463 -12.048 18.751 5.417 -4.143 2.413 F21 VN2 35 VN2 F22 F2 F 0 1 N N N 11.144 -12.336 17.399 3.546 -4.220 1.105 F22 VN2 36 VN2 F23 F3 F 0 1 N N N 9.171 -13.102 16.867 5.612 -4.107 0.137 F23 VN2 37 VN2 F31 F4 F 0 1 N N N 5.145 -15.472 15.735 1.298 -1.541 -5.149 F31 VN2 38 VN2 F32 F5 F 0 1 N N N 7.020 -16.561 15.662 2.502 -1.695 -3.213 F32 VN2 39 VN2 F33 F6 F 0 1 N N N 5.195 -17.603 16.173 0.359 -2.481 -3.290 F33 VN2 40 VN2 F47 F7 F 0 1 N N N 0.971 -18.796 16.342 -6.473 -4.234 0.710 F47 VN2 41 VN2 F48 F8 F 0 1 N N N -0.369 -17.296 17.148 -4.255 -4.357 0.175 F48 VN2 42 VN2 F49 F9 F 0 1 N N N 1.645 -16.703 16.543 -4.895 -4.191 2.362 F49 VN2 43 VN2 N10 N1 N 0 1 Y N N 12.408 -20.356 21.523 4.418 4.798 1.324 N10 VN2 44 VN2 N3 N2 N 0 1 N N N 6.245 -18.351 22.048 -1.311 2.475 0.065 N3 VN2 45 VN2 N36 N3 N 0 1 Y N N 3.443 -19.073 25.160 -4.836 4.682 0.482 N36 VN2 46 VN2 N7 N4 N 0 1 N N N 9.239 -18.983 20.547 2.345 2.018 0.266 N7 VN2 47 VN2 O1 O1 O 0 1 N N N 4.745 -19.436 20.734 -2.525 0.617 0.159 O1 VN2 48 VN2 O6 O2 O 0 1 N N N 8.886 -17.262 22.115 0.923 3.632 0.806 O6 VN2 49 VN2 H1 H1 H 0 1 N N N 14.290 -19.455 21.449 6.299 4.798 2.201 H1 VN2 50 VN2 H2 H2 H 0 1 N N N 13.558 -17.364 20.425 6.486 2.346 2.197 H2 VN2 51 VN2 H3 H3 H 0 1 N N N 12.249 -15.475 21.117 6.570 0.523 0.363 H3 VN2 52 VN2 H4 H4 H 0 1 N N N 11.635 -13.333 20.060 6.683 -1.934 0.340 H4 VN2 53 VN2 H5 H5 H 0 1 N N N 9.250 -15.443 17.197 2.824 -2.146 2.145 H5 VN2 54 VN2 H6 H6 H 0 1 N N N 9.864 -17.587 18.257 2.697 0.311 2.184 H6 VN2 55 VN2 H7 H7 H 0 1 N N N 6.761 -15.499 21.554 -0.589 3.315 -2.243 H7 VN2 56 VN2 H8 H8 H 0 1 N N N 6.145 -13.622 20.071 -0.313 2.799 -4.634 H8 VN2 57 VN2 H9 H9 H 0 1 N N N 5.725 -14.032 17.662 0.524 0.590 -5.329 H9 VN2 58 VN2 H10 H10 H 0 1 N N N 6.534 -18.200 18.243 0.813 -0.586 -1.240 H10 VN2 59 VN2 H11 H11 H 0 1 N N N 5.388 -19.226 24.403 -2.805 4.513 0.092 H11 VN2 60 VN2 H12 H12 H 0 1 N N N 1.403 -18.911 25.587 -6.873 4.707 0.883 H12 VN2 61 VN2 H13 H13 H 0 1 N N N 0.669 -18.541 23.283 -7.043 2.263 1.066 H13 VN2 62 VN2 H14 H14 H 0 1 N N N 6.963 -19.068 20.262 -0.131 0.781 0.437 H14 VN2 63 VN2 H15 H15 H 0 1 N N N 0.883 -20.128 21.098 -3.535 0.345 2.328 H15 VN2 64 VN2 H16 H16 H 0 1 N N N 0.121 -19.694 18.782 -3.647 -2.108 2.485 H16 VN2 65 VN2 H17 H17 H 0 1 N N N 2.721 -16.295 18.563 -6.600 -2.188 -0.592 H17 VN2 66 VN2 H18 H18 H 0 1 N N N 3.456 -16.704 20.890 -6.507 0.265 -0.760 H18 VN2 67 VN2 H19 H19 H 0 1 N N N 10.409 -20.946 21.463 2.541 4.649 0.449 H19 VN2 68 VN2 H20 H20 H 0 1 N N N 6.535 -18.078 22.965 -1.281 3.444 0.097 H20 VN2 69 VN2 H21 H21 H 0 1 N N N 8.797 -19.587 19.884 2.493 1.158 -0.159 H21 VN2 70 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VN2 F32 C30 SING N N 1 VN2 F31 C30 SING N N 2 VN2 F33 C30 SING N N 3 VN2 F47 C46 SING N N 4 VN2 C30 C28 SING N N 5 VN2 F49 C46 SING N N 6 VN2 F23 C20 SING N N 7 VN2 C46 F48 SING N N 8 VN2 C46 C43 SING N N 9 VN2 F22 C20 SING N N 10 VN2 C28 C27 DOUB Y N 11 VN2 C28 C29 SING Y N 12 VN2 C20 C17 SING N N 13 VN2 C20 F21 SING N N 14 VN2 C18 C17 DOUB Y N 15 VN2 C18 C19 SING Y N 16 VN2 C27 C26 SING Y N 17 VN2 C43 C44 DOUB Y N 18 VN2 C43 C42 SING Y N 19 VN2 C17 C16 SING Y N 20 VN2 C29 C24 DOUB Y N 21 VN2 C19 C14 DOUB Y N 22 VN2 C44 C45 SING Y N 23 VN2 C42 C41 DOUB Y N 24 VN2 C16 C15 DOUB Y N 25 VN2 C26 C25 DOUB Y N 26 VN2 C14 C15 SING Y N 27 VN2 C14 C13 SING N N 28 VN2 C24 C25 SING Y N 29 VN2 C24 C4 SING N N 30 VN2 C13 C12 DOUB Y N 31 VN2 C13 C8 SING Y N 32 VN2 C45 C40 DOUB Y N 33 VN2 C41 C40 SING Y N 34 VN2 N7 C8 SING N N 35 VN2 N7 C5 SING N N 36 VN2 C12 C11 SING Y N 37 VN2 C8 C9 DOUB Y N 38 VN2 O1 C2 DOUB N N 39 VN2 C4 C5 SING N N 40 VN2 C4 N3 SING N N 41 VN2 C40 C39 SING N N 42 VN2 C11 N10 DOUB Y N 43 VN2 C9 N10 SING Y N 44 VN2 C5 O6 DOUB N N 45 VN2 C2 N3 SING N N 46 VN2 C2 C34 SING N N 47 VN2 C39 C34 DOUB Y N 48 VN2 C39 C38 SING Y N 49 VN2 C34 C35 SING Y N 50 VN2 C38 C37 DOUB Y N 51 VN2 C35 N36 DOUB Y N 52 VN2 C37 N36 SING Y N 53 VN2 C11 H1 SING N N 54 VN2 C12 H2 SING N N 55 VN2 C15 H3 SING N N 56 VN2 C16 H4 SING N N 57 VN2 C18 H5 SING N N 58 VN2 C19 H6 SING N N 59 VN2 C25 H7 SING N N 60 VN2 C26 H8 SING N N 61 VN2 C27 H9 SING N N 62 VN2 C29 H10 SING N N 63 VN2 C35 H11 SING N N 64 VN2 C37 H12 SING N N 65 VN2 C38 H13 SING N N 66 VN2 C4 H14 SING N N 67 VN2 C41 H15 SING N N 68 VN2 C42 H16 SING N N 69 VN2 C44 H17 SING N N 70 VN2 C45 H18 SING N N 71 VN2 C9 H19 SING N N 72 VN2 N3 H20 SING N N 73 VN2 N7 H21 SING N N 74 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VN2 SMILES ACDLabs 12.01 "O=C(Nc1cnccc1c1ccc(cc1)C(F)(F)F)C(NC(=O)c1cnccc1c1ccc(cc1)C(F)(F)F)c1cccc(c1)C(F)(F)F" VN2 InChI InChI 1.06 "InChI=1S/C34H21F9N4O2/c35-32(36,37)22-8-4-19(5-9-22)25-12-14-44-17-27(25)30(48)47-29(21-2-1-3-24(16-21)34(41,42)43)31(49)46-28-18-45-15-13-26(28)20-6-10-23(11-7-20)33(38,39)40/h1-18,29H,(H,46,49)(H,47,48)/t29-/m0/s1" VN2 InChIKey InChI 1.06 BXBAJPGXWPVCNU-LJAQVGFWSA-N VN2 SMILES_CANONICAL CACTVS 3.385 "FC(F)(F)c1ccc(cc1)c2ccncc2NC(=O)[C@@H](NC(=O)c3cnccc3c4ccc(cc4)C(F)(F)F)c5cccc(c5)C(F)(F)F" VN2 SMILES CACTVS 3.385 "FC(F)(F)c1ccc(cc1)c2ccncc2NC(=O)[CH](NC(=O)c3cnccc3c4ccc(cc4)C(F)(F)F)c5cccc(c5)C(F)(F)F" VN2 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(cc(c1)C(F)(F)F)[C@@H](C(=O)Nc2cnccc2c3ccc(cc3)C(F)(F)F)NC(=O)c4cnccc4c5ccc(cc5)C(F)(F)F" VN2 SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(cc(c1)C(F)(F)F)C(C(=O)Nc2cnccc2c3ccc(cc3)C(F)(F)F)NC(=O)c4cnccc4c5ccc(cc5)C(F)(F)F" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier VN2 "SYSTEMATIC NAME" ACDLabs 12.01 "N-[(1S)-2-oxo-1-[3-(trifluoromethyl)phenyl]-2-({4-[4-(trifluoromethyl)phenyl]pyridin-3-yl}amino)ethyl]-4-[4-(trifluoromethyl)phenyl]pyridine-3-carboxamide" VN2 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}-[(1~{S})-2-oxidanylidene-1-[3-(trifluoromethyl)phenyl]-2-[[4-[4-(trifluoromethyl)phenyl]pyridin-3-yl]amino]ethyl]-4-[4-(trifluoromethyl)phenyl]pyridine-3-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VN2 "Create component" 2022-09-02 RCSB VN2 "Initial release" 2023-05-03 RCSB #