data_VN5 # _chem_comp.id VN5 _chem_comp.name "~{N}'-[2-[1-(4-methoxyphenyl)cyclopropyl]-7-(4-methylpiperazin-1-yl)quinazolin-4-yl]ethane-1,2-diamine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H32 N6 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-03-20 _chem_comp.pdbx_modified_date 2023-06-09 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 432.561 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VN5 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8OGB _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VN5 C1 C1 C 0 1 Y N N -22.229 -26.589 7.215 3.166 -1.520 0.360 C1 VN5 1 VN5 C2 C2 C 0 1 Y N N -21.490 -25.429 7.545 3.514 -0.164 0.360 C2 VN5 2 VN5 C3 C3 C 0 1 Y N N -20.207 -25.600 8.113 2.558 0.809 0.142 C3 VN5 3 VN5 C11 C4 C 0 1 Y N N -17.978 -28.199 9.114 -0.975 0.948 -0.503 C11 VN5 4 VN5 C12 C5 C 0 1 N N N -16.609 -28.256 9.814 -2.027 2.000 -0.743 C12 VN5 5 VN5 C13 C6 C 0 1 Y N N -15.455 -28.864 9.019 -3.396 1.686 -0.196 C13 VN5 6 VN5 C14 C7 C 0 1 Y N N -15.385 -28.772 7.635 -4.195 2.705 0.289 C14 VN5 7 VN5 C15 C8 C 0 1 Y N N -14.303 -29.369 6.974 -5.452 2.421 0.786 C15 VN5 8 VN5 C16 C9 C 0 1 Y N N -13.293 -30.052 7.667 -5.913 1.112 0.798 C16 VN5 9 VN5 C17 C10 C 0 1 Y N N -13.389 -30.114 9.062 -5.109 0.092 0.311 C17 VN5 10 VN5 C18 C11 C 0 1 Y N N -14.470 -29.539 9.742 -3.852 0.381 -0.184 C18 VN5 11 VN5 C19 C12 C 0 1 N N N -16.356 -27.242 11.000 -1.579 3.463 -0.730 C19 VN5 12 VN5 C20 C13 C 0 1 N N N -16.684 -28.723 11.307 -1.952 2.788 -2.052 C20 VN5 13 VN5 C22 C14 C 0 1 N N N -11.381 -31.641 7.735 -7.557 -0.539 1.269 C22 VN5 14 VN5 C24 C15 C 0 1 N N N -21.467 -23.109 8.280 5.347 1.031 -0.524 C24 VN5 15 VN5 C25 C16 C 0 1 N N N -21.844 -21.649 7.954 6.773 1.483 -0.205 C25 VN5 16 VN5 C27 C17 C 0 1 N N N -23.699 -22.576 6.458 7.115 -0.519 1.111 C27 VN5 17 VN5 C28 C18 C 0 1 N N N -23.450 -23.931 7.151 5.688 -0.972 0.792 C28 VN5 18 VN5 C29 C19 C 0 1 N N N -23.057 -20.217 6.491 9.020 0.696 0.239 C29 VN5 19 VN5 C30 C20 C 0 1 N N N -19.592 -31.833 7.891 -2.260 -2.963 -0.553 C30 VN5 20 VN5 C4 C21 C 0 1 Y N N -19.734 -26.911 8.305 1.230 0.430 -0.081 C4 VN5 21 VN5 C5 C22 C 0 1 Y N N -20.481 -28.094 7.982 0.889 -0.945 -0.079 C5 VN5 22 VN5 C6 C23 C 0 1 Y N N -21.759 -27.899 7.420 1.879 -1.910 0.146 C6 VN5 23 VN5 C7 C24 C 0 1 Y N N -19.863 -29.357 8.238 -0.462 -1.298 -0.306 C7 VN5 24 VN5 N8 N1 N 0 1 Y N N -18.613 -29.349 8.797 -1.339 -0.324 -0.510 N8 VN5 25 VN5 N9 N2 N 0 1 N N N -20.409 -30.592 7.981 -0.856 -2.619 -0.316 N9 VN5 26 VN5 N10 N3 N 0 1 Y N N -18.530 -27.006 8.860 0.262 1.334 -0.298 N10 VN5 27 VN5 O21 O1 O 0 1 N N N -12.204 -30.678 7.021 -7.149 0.830 1.287 O21 VN5 28 VN5 N23 N4 N 0 1 N N N -21.999 -24.109 7.325 4.838 0.208 0.583 N23 VN5 29 VN5 N26 N5 N 0 1 N N N -23.164 -21.465 7.278 7.624 0.303 0.005 N26 VN5 30 VN5 C31 C25 C 0 1 N N N -19.216 -32.335 9.298 -2.428 -4.483 -0.513 C31 VN5 31 VN5 N32 N6 N 0 1 N N N -20.378 -32.198 10.182 -3.836 -4.828 -0.752 N32 VN5 32 VN5 H1 H1 H 0 1 N N N -23.210 -26.462 6.781 3.928 -2.266 0.529 H1 VN5 33 VN5 H2 H2 H 0 1 N N N -19.606 -24.747 8.392 2.834 1.853 0.143 H2 VN5 34 VN5 H3 H3 H 0 1 N N N -16.150 -28.250 7.079 -3.837 3.724 0.279 H3 VN5 35 VN5 H4 H4 H 0 1 N N N -14.245 -29.301 5.898 -6.076 3.217 1.165 H4 VN5 36 VN5 H5 H5 H 0 1 N N N -12.615 -30.615 9.625 -5.465 -0.928 0.320 H5 VN5 37 VN5 H6 H6 H 0 1 N N N -14.541 -29.617 10.817 -3.228 -0.412 -0.568 H6 VN5 38 VN5 H7 H7 H 0 1 N N N -15.344 -26.853 11.185 -2.275 4.199 -0.327 H7 VN5 39 VN5 H8 H8 H 0 1 N N N -17.095 -26.458 11.220 -0.524 3.664 -0.549 H8 VN5 40 VN5 H9 H9 H 0 1 N N N -17.656 -28.988 11.749 -1.142 2.546 -2.740 H9 VN5 41 VN5 H10 H10 H 0 1 N N N -15.904 -29.383 11.714 -2.894 3.080 -2.518 H10 VN5 42 VN5 H11 H11 H 0 1 N N N -10.590 -32.015 7.068 -6.864 -1.133 1.865 H11 VN5 43 VN5 H12 H12 H 0 1 N N N -10.923 -31.155 8.609 -8.560 -0.625 1.686 H12 VN5 44 VN5 H13 H13 H 0 1 N N N -12.007 -32.482 8.069 -7.558 -0.904 0.242 H13 VN5 45 VN5 H14 H14 H 0 1 N N N -21.856 -23.349 9.281 4.708 1.904 -0.651 H14 VN5 46 VN5 H15 H15 H 0 1 N N N -20.370 -23.188 8.284 5.348 0.444 -1.442 H15 VN5 47 VN5 H16 H16 H 0 1 N N N -21.065 -21.236 7.296 7.163 2.069 -1.037 H16 VN5 48 VN5 H17 H17 H 0 1 N N N -21.864 -21.085 8.898 6.768 2.093 0.699 H17 VN5 49 VN5 H18 H18 H 0 1 N N N -23.200 -22.574 5.478 7.114 0.067 2.030 H18 VN5 50 VN5 H19 H19 H 0 1 N N N -24.781 -22.434 6.319 7.754 -1.393 1.238 H19 VN5 51 VN5 H20 H20 H 0 1 N N N -23.945 -23.942 8.133 5.693 -1.582 -0.112 H20 VN5 52 VN5 H21 H21 H 0 1 N N N -23.851 -24.745 6.529 5.298 -1.559 1.624 H21 VN5 53 VN5 H22 H22 H 0 1 N N N -22.658 -19.414 7.128 9.639 -0.198 0.324 H22 VN5 54 VN5 H23 H23 H 0 1 N N N -22.381 -20.378 5.638 9.372 1.303 -0.595 H23 VN5 55 VN5 H24 H24 H 0 1 N N N -24.053 -19.930 6.121 9.085 1.272 1.162 H24 VN5 56 VN5 H25 H25 H 0 1 N N N -20.171 -32.611 7.372 -2.881 -2.509 0.219 H25 VN5 57 VN5 H26 H26 H 0 1 N N N -18.673 -31.621 7.325 -2.566 -2.590 -1.531 H26 VN5 58 VN5 H27 H27 H 0 1 N N N -22.371 -28.747 7.150 1.624 -2.959 0.148 H27 VN5 59 VN5 H28 H28 H 0 1 N N N -20.881 -30.508 7.104 -0.204 -3.322 -0.166 H28 VN5 60 VN5 H30 H30 H 0 1 N N N -18.917 -33.392 9.244 -1.807 -4.938 -1.286 H30 VN5 61 VN5 H31 H31 H 0 1 N N N -18.381 -31.737 9.692 -2.122 -4.857 0.464 H31 VN5 62 VN5 H32 H32 H 0 1 N N N -20.141 -32.522 11.098 -4.161 -4.437 -1.623 H32 VN5 63 VN5 H33 H33 H 0 1 N N N -20.650 -31.237 10.229 -3.972 -5.827 -0.730 H33 VN5 64 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VN5 C27 C28 SING N N 1 VN5 C27 N26 SING N N 2 VN5 C29 N26 SING N N 3 VN5 C15 C14 DOUB Y N 4 VN5 C15 C16 SING Y N 5 VN5 O21 C16 SING N N 6 VN5 O21 C22 SING N N 7 VN5 C28 N23 SING N N 8 VN5 C1 C6 DOUB Y N 9 VN5 C1 C2 SING Y N 10 VN5 N26 C25 SING N N 11 VN5 N23 C2 SING N N 12 VN5 N23 C24 SING N N 13 VN5 C6 C5 SING Y N 14 VN5 C2 C3 DOUB Y N 15 VN5 C14 C13 SING Y N 16 VN5 C16 C17 DOUB Y N 17 VN5 C30 N9 SING N N 18 VN5 C30 C31 SING N N 19 VN5 C25 C24 SING N N 20 VN5 N9 C7 SING N N 21 VN5 C5 C7 DOUB Y N 22 VN5 C5 C4 SING Y N 23 VN5 C3 C4 SING Y N 24 VN5 C7 N8 SING Y N 25 VN5 C4 N10 DOUB Y N 26 VN5 N8 C11 DOUB Y N 27 VN5 N10 C11 SING Y N 28 VN5 C13 C18 DOUB Y N 29 VN5 C13 C12 SING N N 30 VN5 C17 C18 SING Y N 31 VN5 C11 C12 SING N N 32 VN5 C31 N32 SING N N 33 VN5 C12 C19 SING N N 34 VN5 C12 C20 SING N N 35 VN5 C19 C20 SING N N 36 VN5 C1 H1 SING N N 37 VN5 C3 H2 SING N N 38 VN5 C14 H3 SING N N 39 VN5 C15 H4 SING N N 40 VN5 C17 H5 SING N N 41 VN5 C18 H6 SING N N 42 VN5 C19 H7 SING N N 43 VN5 C19 H8 SING N N 44 VN5 C20 H9 SING N N 45 VN5 C20 H10 SING N N 46 VN5 C22 H11 SING N N 47 VN5 C22 H12 SING N N 48 VN5 C22 H13 SING N N 49 VN5 C24 H14 SING N N 50 VN5 C24 H15 SING N N 51 VN5 C25 H16 SING N N 52 VN5 C25 H17 SING N N 53 VN5 C27 H18 SING N N 54 VN5 C27 H19 SING N N 55 VN5 C28 H20 SING N N 56 VN5 C28 H21 SING N N 57 VN5 C29 H22 SING N N 58 VN5 C29 H23 SING N N 59 VN5 C29 H24 SING N N 60 VN5 C30 H25 SING N N 61 VN5 C30 H26 SING N N 62 VN5 C6 H27 SING N N 63 VN5 N9 H28 SING N N 64 VN5 C31 H30 SING N N 65 VN5 C31 H31 SING N N 66 VN5 N32 H32 SING N N 67 VN5 N32 H33 SING N N 68 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VN5 InChI InChI 1.06 "InChI=1S/C25H32N6O/c1-30-13-15-31(16-14-30)19-5-8-21-22(17-19)28-24(29-23(21)27-12-11-26)25(9-10-25)18-3-6-20(32-2)7-4-18/h3-8,17H,9-16,26H2,1-2H3,(H,27,28,29)" VN5 InChIKey InChI 1.06 XTLPTSDXAUSHCD-UHFFFAOYSA-N VN5 SMILES_CANONICAL CACTVS 3.385 "COc1ccc(cc1)C2(CC2)c3nc(NCCN)c4ccc(cc4n3)N5CCN(C)CC5" VN5 SMILES CACTVS 3.385 "COc1ccc(cc1)C2(CC2)c3nc(NCCN)c4ccc(cc4n3)N5CCN(C)CC5" VN5 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN1CCN(CC1)c2ccc3c(c2)nc(nc3NCCN)C4(CC4)c5ccc(cc5)OC" VN5 SMILES "OpenEye OEToolkits" 2.0.7 "CN1CCN(CC1)c2ccc3c(c2)nc(nc3NCCN)C4(CC4)c5ccc(cc5)OC" # _pdbx_chem_comp_identifier.comp_id VN5 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{N}'-[2-[1-(4-methoxyphenyl)cyclopropyl]-7-(4-methylpiperazin-1-yl)quinazolin-4-yl]ethane-1,2-diamine" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VN5 "Create component" 2023-03-20 PDBE VN5 "Initial release" 2023-06-14 RCSB #