data_VN6 # _chem_comp.id VN6 _chem_comp.name "5-[[3-(aminomethyl)azetidin-1-yl]methyl]-N-[4-[4-(4-cyano-6-methyl-pyrimidin-2-yl)piperazin-1-yl]sulfonylphenyl]-2-[methyl(methylsulfonyl)amino]benzamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C30 H37 N9 O5 S2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-09-14 _chem_comp.pdbx_modified_date 2024-04-12 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 667.802 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VN6 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8QK5 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VN6 C5 C1 C 0 1 Y N N N N N 5.753 7.685 5.623 9.533 -2.421 -0.226 C5 VN6 1 VN6 C6 C2 C 0 1 Y N N N N N 4.864 6.747 5.145 10.301 -1.704 0.678 C6 VN6 2 VN6 N7 N1 N 0 1 N N N N N N 4.004 10.720 4.792 6.383 -0.790 0.077 N7 VN6 3 VN6 C8 C3 C 0 1 N N N N N N 5.107 11.651 4.987 5.966 0.339 0.919 C8 VN6 4 VN6 C26 C4 C 0 1 Y N N N N N -2.175 12.287 11.944 -5.140 -0.786 -0.600 C26 VN6 5 VN6 C27 C5 C 0 1 Y N N N N N -3.214 11.905 12.798 -6.432 -1.238 -0.442 C27 VN6 6 VN6 C28 C6 C 0 1 Y N N N N N -3.721 12.801 13.734 -7.350 -0.495 0.284 C28 VN6 7 VN6 C29 C7 C 0 1 Y N N N N N -3.213 14.091 13.823 -6.981 0.705 0.857 C29 VN6 8 VN6 C30 C8 C 0 1 Y N N N N N -2.200 14.507 12.966 -5.683 1.176 0.710 C30 VN6 9 VN6 C32 C9 C 0 1 N N N N N N -1.849 16.344 14.506 -4.874 2.425 2.684 C32 VN6 10 VN6 C37 C10 C 0 1 N N N N N N 7.048 7.255 6.320 10.139 -3.559 -1.007 C37 VN6 11 VN6 C38 C11 C 0 1 N N N N N N 2.744 6.239 4.054 10.450 0.113 2.324 C38 VN6 12 VN6 C40 C12 C 0 1 N N N N N N -3.785 10.521 12.799 -6.850 -2.546 -1.062 C40 VN6 13 VN6 C42 C13 C 0 1 N N N N N N -4.899 8.744 11.747 -7.222 -4.894 -0.582 C42 VN6 14 VN6 C1 C14 C 0 1 Y N N N N N 3.689 7.174 4.537 9.698 -0.657 1.380 C1 VN6 15 VN6 N2 N2 N 0 1 Y N N N N N 3.441 8.467 4.406 8.413 -0.387 1.157 N2 VN6 16 VN6 C3 C15 C 0 1 Y N N N N N 4.352 9.381 4.809 7.717 -1.097 0.285 C3 VN6 17 VN6 N4 N3 N 0 1 Y N N N N N 5.470 8.995 5.470 8.261 -2.099 -0.392 N4 VN6 18 VN6 C9 C16 C 0 1 N N N N N N 4.482 12.931 5.542 4.450 0.530 0.797 C9 VN6 19 VN6 C10 C17 C 0 1 N N N N N N 3.158 11.113 3.715 6.119 -0.522 -1.343 C10 VN6 20 VN6 C11 C18 C 0 1 N N N N N N 2.447 12.410 4.171 4.610 -0.366 -1.558 C11 VN6 21 VN6 N12 N4 N 0 1 N N N N N N 3.491 13.454 4.548 4.109 0.658 -0.628 N12 VN6 22 VN6 S13 S1 S 0 1 N N N N N N 2.788 14.870 5.071 3.185 1.920 -1.172 S13 VN6 23 VN6 C14 C19 C 0 1 Y N N N N N 1.800 14.576 6.484 1.501 1.406 -1.090 C14 VN6 24 VN6 O15 O1 O 0 1 N N N N N N 3.839 15.800 5.363 3.332 2.964 -0.219 O15 VN6 25 VN6 O16 O2 O 0 1 N N N N N N 1.966 15.354 4.010 3.490 2.076 -2.551 O16 VN6 26 VN6 C17 C20 C 0 1 Y N N N N N 0.483 14.287 6.305 0.919 0.775 -2.174 C17 VN6 27 VN6 C18 C21 C 0 1 Y N N N N N -0.331 14.047 7.384 -0.400 0.371 -2.113 C18 VN6 28 VN6 C19 C22 C 0 1 Y N N N N N 0.165 14.078 8.682 -1.143 0.600 -0.962 C19 VN6 29 VN6 C20 C23 C 0 1 Y N N N N N 2.346 14.603 7.798 0.766 1.631 0.060 C20 VN6 30 VN6 C21 C24 C 0 1 Y N N N N N 1.504 14.331 8.903 -0.555 1.235 0.125 C21 VN6 31 VN6 N22 N5 N 0 1 N N N N N N -0.722 13.743 9.719 -2.479 0.193 -0.897 N22 VN6 32 VN6 C23 C25 C 0 1 N N N N N N -0.533 14.025 11.046 -3.370 0.916 -0.190 C23 VN6 33 VN6 O24 O3 O 0 1 N N N N N N 0.488 14.601 11.441 -3.035 1.972 0.311 O24 VN6 34 VN6 C25 C26 C 0 1 Y N N N N N -1.635 13.584 12.036 -4.751 0.427 -0.025 C25 VN6 35 VN6 N31 N6 N 0 1 N N N N N N -1.643 15.837 13.113 -5.309 2.384 1.285 N31 VN6 36 VN6 S33 S2 S 0 1 N N N N N N -2.295 16.881 12.037 -5.356 3.777 0.391 S33 VN6 37 VN6 C34 C27 C 0 1 N N N N N N -4.021 17.149 12.439 -7.028 4.429 0.655 C34 VN6 38 VN6 O35 O4 O 0 1 N N N N N N -1.565 18.095 12.112 -4.390 4.619 1.004 O35 VN6 39 VN6 O36 O5 O 0 1 N N N N N N -2.189 16.347 10.712 -5.198 3.337 -0.951 O36 VN6 40 VN6 N39 N7 N 0 1 N N N N N N 1.966 5.524 3.664 11.046 0.724 3.074 N39 VN6 41 VN6 N41 N8 N 0 1 N N N N N N -4.281 10.086 11.520 -6.611 -3.638 -0.109 N41 VN6 42 VN6 C43 C28 C 0 1 N N N N N N -5.618 10.675 11.254 -5.293 -4.259 -0.336 C43 VN6 43 VN6 C44 C29 C 0 1 N N N N N N -6.167 9.270 11.090 -5.958 -5.625 -0.107 C44 VN6 44 VN6 C45 C30 C 0 1 N N N N N N -6.137 8.881 9.610 -6.002 -6.062 1.359 C45 VN6 45 VN6 N46 N9 N 0 1 N N N N N N -7.288 8.017 9.278 -6.546 -7.424 1.448 N46 VN6 46 VN6 H1 H1 H 0 1 N N N N N N 5.077 5.693 5.242 11.341 -1.949 0.836 H1 VN6 47 VN6 H2 H2 H 0 1 N N N N N N 5.834 11.239 5.702 6.223 0.133 1.958 H2 VN6 48 VN6 H3 H3 H 0 1 N N N N N N 5.610 11.854 4.030 6.474 1.245 0.590 H3 VN6 49 VN6 H4 H4 H 0 1 N N N N N N -1.788 11.589 11.216 -4.428 -1.371 -1.163 H4 VN6 50 VN6 H5 H5 H 0 1 N N N N N N -4.516 12.491 14.397 -8.361 -0.858 0.401 H5 VN6 51 VN6 H6 H6 H 0 1 N N N N N N -3.607 14.774 14.561 -7.703 1.278 1.421 H6 VN6 52 VN6 H7 H7 H 0 1 N N N N N N -1.408 15.636 15.223 -3.796 2.277 2.733 H7 VN6 53 VN6 H8 H8 H 0 1 N N N N N N -1.364 17.326 14.614 -5.128 3.394 3.115 H8 VN6 54 VN6 H9 H9 H 0 1 N N N N N N -2.926 16.443 14.704 -5.376 1.636 3.244 H9 VN6 55 VN6 H10 H10 H 0 1 N N N N N N 7.615 8.147 6.624 10.017 -4.487 -0.449 H10 VN6 56 VN6 H11 H11 H 0 1 N N N N N N 6.804 6.655 7.209 9.637 -3.646 -1.970 H11 VN6 57 VN6 H12 H12 H 0 1 N N N N N N 7.655 6.654 5.627 11.200 -3.366 -1.165 H12 VN6 58 VN6 H13 H13 H 0 1 N N N N N N -4.616 10.491 13.519 -7.910 -2.507 -1.313 H13 VN6 59 VN6 H14 H14 H 0 1 N N N N N N -2.997 9.823 13.119 -6.269 -2.720 -1.968 H14 VN6 60 VN6 H15 H15 H 0 1 N N N N N N -5.015 8.468 12.806 -8.120 -5.175 -0.030 H15 VN6 61 VN6 H16 H16 H 0 1 N N N N N N -4.412 7.920 11.204 -7.364 -4.929 -1.662 H16 VN6 62 VN6 H17 H17 H 0 1 N N N N N N 5.267 13.682 5.712 3.937 -0.333 1.220 H17 VN6 63 VN6 H18 H18 H 0 1 N N N N N N 3.973 12.712 6.492 4.151 1.433 1.330 H18 VN6 64 VN6 H19 H19 H 0 1 N N N N N N 2.418 10.327 3.506 6.626 0.396 -1.640 H19 VN6 65 VN6 H20 H20 H 0 1 N N N N N N 3.756 11.304 2.811 6.488 -1.353 -1.944 H20 VN6 66 VN6 H21 H21 H 0 1 N N N N N N 1.823 12.794 3.351 4.417 -0.054 -2.585 H21 VN6 67 VN6 H22 H22 H 0 1 N N N N N N 1.813 12.194 5.043 4.112 -1.315 -1.360 H22 VN6 68 VN6 H23 H23 H 0 1 N N N N N N 0.074 14.246 5.306 1.497 0.597 -3.069 H23 VN6 69 VN6 H24 H24 H 0 1 N N N N N N -1.376 13.830 7.221 -0.854 -0.122 -2.960 H24 VN6 70 VN6 H25 H25 H 0 1 N N N N N N 3.391 14.829 7.950 1.225 2.121 0.906 H25 VN6 71 VN6 H26 H26 H 0 1 N N N N N N 1.904 14.322 9.906 -1.130 1.415 1.021 H26 VN6 72 VN6 H27 H27 H 0 1 N N N N N N -1.560 13.259 9.468 -2.765 -0.609 -1.361 H27 VN6 73 VN6 H28 H28 H 0 1 N N N N N N -4.102 17.559 13.457 -7.148 5.357 0.096 H28 VN6 74 VN6 H29 H29 H 0 1 N N N N N N -4.458 17.859 11.722 -7.761 3.699 0.310 H29 VN6 75 VN6 H30 H30 H 0 1 N N N N N N -4.563 16.193 12.385 -7.179 4.622 1.717 H30 VN6 76 VN6 H32 H32 H 0 1 N N N N N N -5.670 11.292 10.345 -4.919 -4.125 -1.351 H32 VN6 77 VN6 H33 H33 H 0 1 N N N N N N -6.045 11.233 12.100 -4.555 -4.001 0.423 H33 VN6 78 VN6 H34 H34 H 0 1 N N N N N N -7.106 9.056 11.621 -5.614 -6.408 -0.782 H34 VN6 79 VN6 H35 H35 H 0 1 N N N N N N -5.204 8.338 9.397 -4.994 -6.046 1.773 H35 VN6 80 VN6 H36 H36 H 0 1 N N N N N N -6.179 9.792 8.995 -6.637 -5.379 1.923 H36 VN6 81 VN6 H37 H37 H 0 1 N N N N N N -7.253 7.772 8.309 -6.585 -7.735 2.407 H37 VN6 82 VN6 H38 H38 H 0 1 N N N N N N -7.252 7.186 9.833 -7.455 -7.479 1.013 H38 VN6 83 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VN6 N39 C38 TRIP N N 1 VN6 C10 C11 SING N N 2 VN6 C10 N7 SING N N 3 VN6 O16 S13 DOUB N N 4 VN6 C38 C1 SING N N 5 VN6 C11 N12 SING N N 6 VN6 N2 C1 DOUB Y N 7 VN6 N2 C3 SING Y N 8 VN6 C1 C6 SING Y N 9 VN6 N12 S13 SING N N 10 VN6 N12 C9 SING N N 11 VN6 N7 C3 SING N N 12 VN6 N7 C8 SING N N 13 VN6 C3 N4 DOUB Y N 14 VN6 C8 C9 SING N N 15 VN6 S13 O15 DOUB N N 16 VN6 S13 C14 SING N N 17 VN6 C6 C5 DOUB Y N 18 VN6 N4 C5 SING Y N 19 VN6 C5 C37 SING N N 20 VN6 C17 C14 DOUB Y N 21 VN6 C17 C18 SING Y N 22 VN6 C14 C20 SING Y N 23 VN6 C18 C19 DOUB Y N 24 VN6 C20 C21 DOUB Y N 25 VN6 C19 C21 SING Y N 26 VN6 C19 N22 SING N N 27 VN6 N46 C45 SING N N 28 VN6 C45 C44 SING N N 29 VN6 N22 C23 SING N N 30 VN6 O36 S33 DOUB N N 31 VN6 C23 O24 DOUB N N 32 VN6 C23 C25 SING N N 33 VN6 C44 C43 SING N N 34 VN6 C44 C42 SING N N 35 VN6 C43 N41 SING N N 36 VN6 N41 C42 SING N N 37 VN6 N41 C40 SING N N 38 VN6 C26 C25 DOUB Y N 39 VN6 C26 C27 SING Y N 40 VN6 C25 C30 SING Y N 41 VN6 S33 O35 DOUB N N 42 VN6 S33 C34 SING N N 43 VN6 S33 N31 SING N N 44 VN6 C27 C40 SING N N 45 VN6 C27 C28 DOUB Y N 46 VN6 C30 N31 SING N N 47 VN6 C30 C29 DOUB Y N 48 VN6 N31 C32 SING N N 49 VN6 C28 C29 SING Y N 50 VN6 C6 H1 SING N N 51 VN6 C8 H2 SING N N 52 VN6 C8 H3 SING N N 53 VN6 C26 H4 SING N N 54 VN6 C28 H5 SING N N 55 VN6 C29 H6 SING N N 56 VN6 C32 H7 SING N N 57 VN6 C32 H8 SING N N 58 VN6 C32 H9 SING N N 59 VN6 C37 H10 SING N N 60 VN6 C37 H11 SING N N 61 VN6 C37 H12 SING N N 62 VN6 C40 H13 SING N N 63 VN6 C40 H14 SING N N 64 VN6 C42 H15 SING N N 65 VN6 C42 H16 SING N N 66 VN6 C9 H17 SING N N 67 VN6 C9 H18 SING N N 68 VN6 C10 H19 SING N N 69 VN6 C10 H20 SING N N 70 VN6 C11 H21 SING N N 71 VN6 C11 H22 SING N N 72 VN6 C17 H23 SING N N 73 VN6 C18 H24 SING N N 74 VN6 C20 H25 SING N N 75 VN6 C21 H26 SING N N 76 VN6 N22 H27 SING N N 77 VN6 C34 H28 SING N N 78 VN6 C34 H29 SING N N 79 VN6 C34 H30 SING N N 80 VN6 C43 H32 SING N N 81 VN6 C43 H33 SING N N 82 VN6 C44 H34 SING N N 83 VN6 C45 H35 SING N N 84 VN6 C45 H36 SING N N 85 VN6 N46 H37 SING N N 86 VN6 N46 H38 SING N N 87 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VN6 InChI InChI 1.06 "InChI=1S/C30H37N9O5S2/c1-21-14-25(17-32)35-30(33-21)38-10-12-39(13-11-38)46(43,44)26-7-5-24(6-8-26)34-29(40)27-15-22(18-37-19-23(16-31)20-37)4-9-28(27)36(2)45(3,41)42/h4-9,14-15,23H,10-13,16,18-20,31H2,1-3H3,(H,34,40)" VN6 InChIKey InChI 1.06 YZXAAZBUIFNWLC-UHFFFAOYSA-N VN6 SMILES_CANONICAL CACTVS 3.385 "CN(c1ccc(CN2CC(CN)C2)cc1C(=O)Nc3ccc(cc3)[S](=O)(=O)N4CCN(CC4)c5nc(C)cc(n5)C#N)[S](C)(=O)=O" VN6 SMILES CACTVS 3.385 "CN(c1ccc(CN2CC(CN)C2)cc1C(=O)Nc3ccc(cc3)[S](=O)(=O)N4CCN(CC4)c5nc(C)cc(n5)C#N)[S](C)(=O)=O" VN6 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1cc(nc(n1)N2CCN(CC2)S(=O)(=O)c3ccc(cc3)NC(=O)c4cc(ccc4N(C)S(=O)(=O)C)CN5CC(C5)CN)C#N" VN6 SMILES "OpenEye OEToolkits" 2.0.7 "Cc1cc(nc(n1)N2CCN(CC2)S(=O)(=O)c3ccc(cc3)NC(=O)c4cc(ccc4N(C)S(=O)(=O)C)CN5CC(C5)CN)C#N" # _pdbx_chem_comp_identifier.comp_id VN6 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "5-[[3-(aminomethyl)azetidin-1-yl]methyl]-~{N}-[4-[4-(4-cyano-6-methyl-pyrimidin-2-yl)piperazin-1-yl]sulfonylphenyl]-2-[methyl(methylsulfonyl)amino]benzamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VN6 "Create component" 2023-09-14 PDBE VN6 "Initial release" 2024-04-17 RCSB #