data_VN8 # _chem_comp.id VN8 _chem_comp.name "(3S,5aS,8aR)-3-benzyl-6-[(3,5-dichlorophenyl)methyl]-1,4-dimethyloctahydropyrrolo[3,2-e][1,4]diazepine-2,5-dione" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C23 H25 Cl2 N3 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-09-02 _chem_comp.pdbx_modified_date 2023-04-28 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 446.370 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VN8 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8EA5 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VN8 C1 C1 C 0 1 N N N -0.930 -16.555 21.545 2.164 2.863 0.121 C1 VN8 1 VN8 C10 C2 C 0 1 N N N 3.219 -16.011 17.808 -0.930 -1.938 0.037 C10 VN8 2 VN8 C12 C3 C 0 1 N N N 1.224 -17.354 17.129 -1.573 -0.098 1.487 C12 VN8 3 VN8 C13 C4 C 0 1 Y N N 0.938 -16.685 15.818 -2.943 0.078 0.884 C13 VN8 4 VN8 C14 C5 C 0 1 Y N N 0.597 -15.333 15.781 -3.832 -0.981 0.867 C14 VN8 5 VN8 C15 C6 C 0 1 Y N N 0.333 -14.712 14.559 -5.089 -0.820 0.314 C15 VN8 6 VN8 C17 C7 C 0 1 Y N N 0.414 -15.406 13.350 -5.457 0.401 -0.223 C17 VN8 7 VN8 C18 C8 C 0 1 Y N N 0.763 -16.759 13.359 -4.568 1.460 -0.206 C18 VN8 8 VN8 C20 C9 C 0 1 Y N N 1.016 -17.388 14.595 -3.312 1.299 0.353 C20 VN8 9 VN8 C22 C10 C 0 1 N N N 3.890 -15.862 22.442 1.593 -2.583 -1.966 C22 VN8 10 VN8 C23 C11 C 0 1 N N N 1.751 -14.962 21.740 2.343 -0.425 -1.728 C23 VN8 11 VN8 C25 C12 C 0 1 N N S 0.670 -14.916 20.661 2.490 1.006 -1.407 C25 VN8 12 VN8 C26 C13 C 0 1 N N N -0.481 -13.901 20.890 3.978 1.355 -1.464 C26 VN8 13 VN8 C27 C14 C 0 1 Y N N 0.132 -12.652 20.367 4.695 0.684 -0.321 C27 VN8 14 VN8 C28 C15 C 0 1 Y N N 0.393 -11.555 21.177 5.142 -0.618 -0.455 C28 VN8 15 VN8 C29 C16 C 0 1 Y N N 0.997 -10.403 20.663 5.800 -1.234 0.594 C29 VN8 16 VN8 C3 C17 C 0 1 N N N 0.828 -17.463 20.244 1.394 0.797 0.830 C3 VN8 17 VN8 C30 C18 C 0 1 Y N N 1.405 -10.329 19.331 6.011 -0.548 1.776 C30 VN8 18 VN8 C31 C19 C 0 1 Y N N 1.170 -11.423 18.505 5.564 0.753 1.909 C31 VN8 19 VN8 C32 C20 C 0 1 Y N N 0.523 -12.550 19.020 4.912 1.371 0.858 C32 VN8 20 VN8 C5 C21 C 0 1 N N S 2.090 -17.192 19.477 0.750 -0.511 0.940 C5 VN8 21 VN8 C7 C22 C 0 1 N N R 3.231 -16.448 20.182 1.470 -1.680 0.272 C7 VN8 22 VN8 C9 C23 C 0 1 N N N 3.733 -15.468 19.138 0.351 -2.766 0.278 C9 VN8 23 VN8 N11 N1 N 0 1 N N N 1.817 -16.441 18.159 -0.636 -0.549 0.450 N11 VN8 24 VN8 N2 N2 N 0 1 N N N 0.183 -16.305 20.702 1.983 1.432 -0.137 N2 VN8 25 VN8 N21 N3 N 0 1 N N N 2.874 -15.749 21.450 1.841 -1.432 -1.094 N21 VN8 26 VN8 O24 O1 O 0 1 N N N 1.626 -14.402 22.821 2.787 -0.719 -2.817 O24 VN8 27 VN8 O4 O2 O 0 1 N N N 0.440 -18.609 20.446 1.372 1.426 1.867 O4 VN8 28 VN8 CL16 CL1 CL 0 0 N N N -0.113 -13.041 14.535 -6.205 -2.150 0.292 CL16 VN8 29 VN8 CL19 CL2 CL 0 0 N N N 0.856 -17.581 11.809 -5.029 2.992 -0.879 CL19 VN8 30 VN8 H1 H1 H 0 1 N N N -1.376 -15.599 21.858 1.334 3.419 -0.313 H1 VN8 31 VN8 H2 H2 H 0 1 N N N -1.679 -17.147 20.998 2.195 3.037 1.197 H2 VN8 32 VN8 H3 H3 H 0 1 N N N -0.599 -17.113 22.433 3.100 3.197 -0.327 H3 VN8 33 VN8 H4 H4 H 0 1 N N N 3.823 -16.864 17.465 -1.195 -1.963 -1.020 H4 VN8 34 VN8 H5 H5 H 0 1 N N N 3.214 -15.230 17.034 -1.749 -2.338 0.636 H5 VN8 35 VN8 H6 H6 H 0 1 N N N 0.280 -17.757 17.525 -1.232 0.852 1.897 H6 VN8 36 VN8 H7 H7 H 0 1 N N N 1.929 -18.179 16.950 -1.619 -0.841 2.283 H7 VN8 37 VN8 H8 H8 H 0 1 N N N 0.537 -14.766 16.698 -3.544 -1.934 1.286 H8 VN8 38 VN8 H9 H9 H 0 1 N N N 0.209 -14.902 12.417 -6.438 0.525 -0.659 H9 VN8 39 VN8 H10 H10 H 0 1 N N N 1.277 -18.436 14.607 -2.618 2.126 0.366 H10 VN8 40 VN8 H11 H11 H 0 1 N N N 3.575 -15.330 23.352 0.521 -2.770 -2.024 H11 VN8 41 VN8 H12 H12 H 0 1 N N N 4.057 -16.924 22.677 1.980 -2.373 -2.963 H12 VN8 42 VN8 H13 H13 H 0 1 N N N 4.823 -15.419 22.063 2.093 -3.461 -1.558 H13 VN8 43 VN8 H14 H14 H 0 1 N N N 1.139 -14.710 19.687 1.981 1.579 -2.182 H14 VN8 44 VN8 H15 H15 H 0 1 N N N -0.733 -13.811 21.957 4.396 1.008 -2.409 H15 VN8 45 VN8 H16 H16 H 0 1 N N N -1.382 -14.177 20.322 4.102 2.435 -1.386 H16 VN8 46 VN8 H17 H17 H 0 1 N N N 0.125 -11.592 22.223 4.977 -1.154 -1.378 H17 VN8 47 VN8 H18 H18 H 0 1 N N N 1.151 -9.553 21.311 6.148 -2.251 0.490 H18 VN8 48 VN8 H19 H19 H 0 1 N N N 1.892 -9.443 18.950 6.524 -1.030 2.595 H19 VN8 49 VN8 H20 H20 H 0 1 N N N 1.485 -11.402 17.472 5.733 1.290 2.830 H20 VN8 50 VN8 H21 H21 H 0 1 N N N 0.315 -13.376 18.356 4.563 2.388 0.962 H21 VN8 51 VN8 H22 H22 H 0 1 N N N 2.497 -18.173 19.189 0.696 -0.748 2.002 H22 VN8 52 VN8 H23 H23 H 0 1 N N N 4.033 -17.171 20.392 2.335 -1.991 0.858 H23 VN8 53 VN8 H24 H24 H 0 1 N N N 4.832 -15.429 19.141 0.309 -3.271 1.244 H24 VN8 54 VN8 H25 H25 H 0 1 N N N 3.330 -14.462 19.327 0.505 -3.483 -0.527 H25 VN8 55 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VN8 CL19 C18 SING N N 1 VN8 C17 C18 DOUB Y N 2 VN8 C17 C15 SING Y N 3 VN8 C18 C20 SING Y N 4 VN8 CL16 C15 SING N N 5 VN8 C15 C14 DOUB Y N 6 VN8 C20 C13 DOUB Y N 7 VN8 C14 C13 SING Y N 8 VN8 C13 C12 SING N N 9 VN8 C12 N11 SING N N 10 VN8 C10 N11 SING N N 11 VN8 C10 C9 SING N N 12 VN8 N11 C5 SING N N 13 VN8 C31 C32 DOUB Y N 14 VN8 C31 C30 SING Y N 15 VN8 C32 C27 SING Y N 16 VN8 C9 C7 SING N N 17 VN8 C30 C29 DOUB Y N 18 VN8 C5 C7 SING N N 19 VN8 C5 C3 SING N N 20 VN8 C7 N21 SING N N 21 VN8 C3 O4 DOUB N N 22 VN8 C3 N2 SING N N 23 VN8 C27 C26 SING N N 24 VN8 C27 C28 DOUB Y N 25 VN8 C25 N2 SING N N 26 VN8 C25 C26 SING N N 27 VN8 C25 C23 SING N N 28 VN8 C29 C28 SING Y N 29 VN8 N2 C1 SING N N 30 VN8 N21 C23 SING N N 31 VN8 N21 C22 SING N N 32 VN8 C23 O24 DOUB N N 33 VN8 C1 H1 SING N N 34 VN8 C1 H2 SING N N 35 VN8 C1 H3 SING N N 36 VN8 C10 H4 SING N N 37 VN8 C10 H5 SING N N 38 VN8 C12 H6 SING N N 39 VN8 C12 H7 SING N N 40 VN8 C14 H8 SING N N 41 VN8 C17 H9 SING N N 42 VN8 C20 H10 SING N N 43 VN8 C22 H11 SING N N 44 VN8 C22 H12 SING N N 45 VN8 C22 H13 SING N N 46 VN8 C25 H14 SING N N 47 VN8 C26 H15 SING N N 48 VN8 C26 H16 SING N N 49 VN8 C28 H17 SING N N 50 VN8 C29 H18 SING N N 51 VN8 C30 H19 SING N N 52 VN8 C31 H20 SING N N 53 VN8 C32 H21 SING N N 54 VN8 C5 H22 SING N N 55 VN8 C7 H23 SING N N 56 VN8 C9 H24 SING N N 57 VN8 C9 H25 SING N N 58 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VN8 SMILES ACDLabs 12.01 "Clc1cc(cc(Cl)c1)CN1CCC2N(C)C(=O)C(Cc3ccccc3)N(C)C(=O)C21" VN8 InChI InChI 1.06 "InChI=1S/C23H25Cl2N3O2/c1-26-19-8-9-28(14-16-10-17(24)13-18(25)11-16)21(19)23(30)27(2)20(22(26)29)12-15-6-4-3-5-7-15/h3-7,10-11,13,19-21H,8-9,12,14H2,1-2H3/t19-,20+,21+/m1/s1" VN8 InChIKey InChI 1.06 MWJQVEWYXAWYBM-HKBOAZHASA-N VN8 SMILES_CANONICAL CACTVS 3.385 "CN1[C@@H]2CCN(Cc3cc(Cl)cc(Cl)c3)[C@@H]2C(=O)N(C)[C@@H](Cc4ccccc4)C1=O" VN8 SMILES CACTVS 3.385 "CN1[CH]2CCN(Cc3cc(Cl)cc(Cl)c3)[CH]2C(=O)N(C)[CH](Cc4ccccc4)C1=O" VN8 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN1[C@@H]2CCN([C@@H]2C(=O)N([C@H](C1=O)Cc3ccccc3)C)Cc4cc(cc(c4)Cl)Cl" VN8 SMILES "OpenEye OEToolkits" 2.0.7 "CN1C2CCN(C2C(=O)N(C(C1=O)Cc3ccccc3)C)Cc4cc(cc(c4)Cl)Cl" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier VN8 "SYSTEMATIC NAME" ACDLabs 12.01 "(3S,5aS,8aR)-3-benzyl-6-[(3,5-dichlorophenyl)methyl]-1,4-dimethyloctahydropyrrolo[3,2-e][1,4]diazepine-2,5-dione" VN8 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(3~{S},5~{a}~{S},8~{a}~{R})-6-[[3,5-bis(chloranyl)phenyl]methyl]-1,4-dimethyl-3-(phenylmethyl)-5~{a},7,8,8~{a}-tetrahydro-3~{H}-pyrrolo[3,2-e][1,4]diazepine-2,5-dione" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VN8 "Create component" 2022-09-02 RCSB VN8 "Initial release" 2023-05-03 RCSB #