data_VND # _chem_comp.id VND _chem_comp.name "(1S,2S,3R,4S,5S)-5-(butylamino)-1-(hydroxymethyl)cyclohexane-1,2,3,4-tetrol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C11 H23 N O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-08-30 _chem_comp.pdbx_modified_date 2021-10-08 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 249.304 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VND _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7JTY _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VND N1 N1 N 0 1 N N N -11.185 22.895 -13.479 -1.102 0.474 -0.484 N1 VND 1 VND C4 C1 C 0 1 N N R -8.812 21.727 -12.372 0.924 -1.364 0.473 C4 VND 2 VND C5 C2 C 0 1 N N S -8.948 22.034 -10.880 2.177 -0.524 0.217 C5 VND 3 VND C6 C3 C 0 1 N N S -10.235 22.823 -10.604 1.772 0.830 -0.369 C6 VND 4 VND C7 C4 C 0 1 N N N -10.238 23.247 -9.127 3.025 1.670 -0.625 C7 VND 5 VND C8 C5 C 0 1 N N N -12.292 23.649 -14.032 -2.500 0.056 -0.649 C8 VND 6 VND C10 C6 C 0 1 N N N -14.200 22.275 -12.852 -4.836 0.371 0.181 C10 VND 7 VND C1 C7 C 0 1 N N N -10.387 24.067 -11.488 1.026 0.612 -1.687 C1 VND 8 VND C11 C8 C 0 1 N N N -15.578 21.672 -13.147 -5.715 1.122 1.183 C11 VND 9 VND C2 C9 C 0 1 N N S -10.130 23.788 -12.974 -0.227 -0.228 -1.432 C2 VND 10 VND C3 C10 C 0 1 N N S -8.784 23.057 -13.127 0.178 -1.582 -0.845 C3 VND 11 VND C9 C11 C 0 1 N N N -13.584 22.823 -14.131 -3.379 0.807 0.353 C9 VND 12 VND O1 O1 O 0 1 N N N -11.311 21.982 -10.882 0.921 1.513 0.553 O1 VND 13 VND O2 O2 O 0 1 N N N -9.273 24.254 -8.958 3.783 1.775 0.582 O2 VND 14 VND O3 O3 O 0 1 N N N -9.045 20.810 -10.205 2.874 -0.321 1.448 O3 VND 15 VND O4 O4 O 0 1 N N N -7.599 21.035 -12.564 1.302 -2.629 1.020 O4 VND 16 VND O5 O5 O 0 1 N N N -8.485 22.876 -14.487 -0.992 -2.366 -0.607 O5 VND 17 VND H1 H1 H 0 1 N N N -11.520 22.329 -12.726 -1.010 1.475 -0.580 H1 VND 18 VND H3 H3 H 0 1 N N N -9.673 21.129 -12.707 0.275 -0.843 1.176 H3 VND 19 VND H4 H4 H 0 1 N N N -8.078 22.615 -10.540 2.826 -1.045 -0.486 H4 VND 20 VND H5 H5 H 0 1 N N N -11.231 23.633 -8.852 3.632 1.192 -1.394 H5 VND 21 VND H6 H6 H 0 1 N N N -9.991 22.384 -8.491 2.733 2.665 -0.959 H6 VND 22 VND H7 H7 H 0 1 N N N -12.015 23.991 -15.040 -2.830 0.283 -1.663 H7 VND 23 VND H8 H8 H 0 1 N N N -12.480 24.520 -13.388 -2.582 -1.016 -0.472 H8 VND 24 VND H9 H9 H 0 1 N N N -13.543 21.496 -12.437 -4.918 -0.701 0.358 H9 VND 25 VND H10 H10 H 0 1 N N N -14.309 23.091 -12.122 -5.166 0.598 -0.833 H10 VND 26 VND H11 H11 H 0 1 N N N -9.670 24.828 -11.146 0.738 1.577 -2.105 H11 VND 27 VND H12 H12 H 0 1 N N N -11.411 24.452 -11.377 1.676 0.091 -2.391 H12 VND 28 VND H13 H13 H 0 1 N N N -16.014 21.279 -12.216 -6.753 0.812 1.060 H13 VND 29 VND H14 H14 H 0 1 N N N -16.237 22.449 -13.561 -5.385 0.895 2.197 H14 VND 30 VND H15 H15 H 0 1 N N N -15.472 20.855 -13.876 -5.633 2.194 1.006 H15 VND 31 VND H16 H16 H 0 1 N N N -10.111 24.732 -13.538 -0.758 -0.383 -2.371 H16 VND 32 VND H17 H17 H 0 1 N N N -8.010 23.687 -12.665 0.827 -2.103 -1.549 H17 VND 33 VND H18 H18 H 0 1 N N N -14.342 23.463 -14.607 -3.050 0.580 1.367 H18 VND 34 VND H19 H19 H 0 1 N N N -13.369 21.962 -14.782 -3.298 1.879 0.176 H19 VND 35 VND H20 H20 H 0 1 N N N -11.247 21.198 -10.349 1.329 1.685 1.412 H20 VND 36 VND H21 H21 H 0 1 N N N -9.259 24.531 -8.049 4.593 2.295 0.494 H21 VND 37 VND H22 H22 H 0 1 N N N -9.131 20.968 -9.272 3.161 -1.139 1.877 H22 VND 38 VND H23 H23 H 0 1 N N N -7.626 20.211 -12.092 0.556 -3.215 1.208 H23 VND 39 VND H24 H24 H 0 1 N N N -7.653 22.425 -14.572 -0.811 -3.240 -0.234 H24 VND 40 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VND O5 C3 SING N N 1 VND C9 C8 SING N N 2 VND C9 C10 SING N N 3 VND C8 N1 SING N N 4 VND N1 C2 SING N N 5 VND C11 C10 SING N N 6 VND C3 C2 SING N N 7 VND C3 C4 SING N N 8 VND C2 C1 SING N N 9 VND O4 C4 SING N N 10 VND C4 C5 SING N N 11 VND C1 C6 SING N N 12 VND O1 C6 SING N N 13 VND C5 C6 SING N N 14 VND C5 O3 SING N N 15 VND C6 C7 SING N N 16 VND C7 O2 SING N N 17 VND N1 H1 SING N N 18 VND C4 H3 SING N N 19 VND C5 H4 SING N N 20 VND C7 H5 SING N N 21 VND C7 H6 SING N N 22 VND C8 H7 SING N N 23 VND C8 H8 SING N N 24 VND C10 H9 SING N N 25 VND C10 H10 SING N N 26 VND C1 H11 SING N N 27 VND C1 H12 SING N N 28 VND C11 H13 SING N N 29 VND C11 H14 SING N N 30 VND C11 H15 SING N N 31 VND C2 H16 SING N N 32 VND C3 H17 SING N N 33 VND C9 H18 SING N N 34 VND C9 H19 SING N N 35 VND O1 H20 SING N N 36 VND O2 H21 SING N N 37 VND O3 H22 SING N N 38 VND O4 H23 SING N N 39 VND O5 H24 SING N N 40 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VND SMILES ACDLabs 12.01 "N(C1CC(C(C(C1O)O)O)(CO)O)CCCC" VND InChI InChI 1.03 "InChI=1S/C11H23NO5/c1-2-3-4-12-7-5-11(17,6-13)10(16)9(15)8(7)14/h7-10,12-17H,2-6H2,1H3/t7-,8-,9+,10-,11-/m0/s1" VND InChIKey InChI 1.03 OSBGPDPUURWCPT-HHKYUTTNSA-N VND SMILES_CANONICAL CACTVS 3.385 "CCCCN[C@H]1C[C@](O)(CO)[C@@H](O)[C@H](O)[C@H]1O" VND SMILES CACTVS 3.385 "CCCCN[CH]1C[C](O)(CO)[CH](O)[CH](O)[CH]1O" VND SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCCN[C@H]1C[C@@]([C@H]([C@@H]([C@H]1O)O)O)(CO)O" VND SMILES "OpenEye OEToolkits" 2.0.7 "CCCCNC1CC(C(C(C1O)O)O)(CO)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier VND "SYSTEMATIC NAME" ACDLabs 12.01 "(1S,2S,3R,4S,5S)-5-(butylamino)-1-(hydroxymethyl)cyclohexane-1,2,3,4-tetrol" VND "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(1~{S},2~{S},3~{R},4~{S},5~{S})-5-(butylamino)-1-(hydroxymethyl)cyclohexane-1,2,3,4-tetrol" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VND "Create component" 2020-08-30 RCSB VND "Initial release" 2021-10-13 RCSB ##