data_VNG # _chem_comp.id VNG _chem_comp.name "N-[4-[5-(1,2,4-oxadiazol-3-yl)thiophen-2-yl]pyridin-2-yl]cyclopropanecarboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C15 H12 N4 O2 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-09-14 _chem_comp.pdbx_modified_date 2024-08-30 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 312.346 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VNG _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8QJI _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VNG C4 C1 C 0 1 Y N N N N N -14.311 -19.058 -2.703 2.565 0.317 -0.009 C4 VNG 1 VNG C6 C2 C 0 1 Y N N N N N -12.312 -18.302 -1.626 0.327 1.180 0.019 C6 VNG 2 VNG C7 C3 C 0 1 Y N N N N N -12.094 -19.613 -1.223 0.881 2.467 0.051 C7 VNG 3 VNG C8 C4 C 0 1 Y N N N N N -13.011 -20.576 -1.589 2.252 2.608 0.051 C8 VNG 4 VNG C15 C5 C 0 1 Y N N N N N -9.872 -13.624 -0.930 -4.824 -0.497 -0.004 C15 VNG 5 VNG C17 C6 C 0 1 Y N N N N N -8.888 -11.857 -0.555 -6.310 -2.010 -0.029 C17 VNG 6 VNG C22 C7 C 0 1 N N N N N N -18.270 -18.763 -4.074 7.211 -1.401 -0.411 C22 VNG 7 VNG C2 C8 C 0 1 N N N N N N -15.899 -17.778 -4.121 4.773 -0.547 -0.147 C2 VNG 8 VNG N9 N1 N 0 1 Y N N N N N -14.108 -20.325 -2.317 3.043 1.552 0.021 N9 VNG 9 VNG C11 C9 C 0 1 Y N N N N N -10.275 -17.303 -0.421 -2.062 1.983 0.047 C11 VNG 10 VNG C12 C10 C 0 1 Y N N N N N -9.634 -16.067 -0.237 -3.367 1.558 0.039 C12 VNG 11 VNG N16 N2 N 0 1 Y N N N N N -8.824 -13.101 -0.228 -5.012 -1.837 -0.033 N16 VNG 12 VNG N19 N3 N 0 1 Y N N N N N -10.541 -12.762 -1.644 -6.011 0.058 0.016 N19 VNG 13 VNG C10 C11 C 0 1 Y N N N N N -11.382 -17.231 -1.239 -1.137 0.984 0.018 C10 VNG 14 VNG C13 C12 C 0 1 Y N N N N N -10.241 -15.030 -0.913 -3.525 0.207 0.009 C13 VNG 15 VNG C20 C13 C 0 1 N N N N N N -17.246 -17.923 -4.780 5.716 -1.712 -0.301 C20 VNG 16 VNG C21 C14 C 0 1 N N N N N N -18.417 -17.273 -4.102 6.651 -2.024 0.870 C21 VNG 17 VNG C5 C15 C 0 1 Y N N N N N -13.442 -18.011 -2.383 1.198 0.086 -0.012 C5 VNG 18 VNG N3 N4 N 0 1 N N N N N N -15.488 -18.880 -3.445 3.447 -0.763 -0.045 N3 VNG 19 VNG O1 O1 O 0 1 N N N N N N -15.247 -16.741 -4.212 5.207 0.585 -0.113 O1 VNG 20 VNG O18 O2 O 0 1 Y N N N N N -9.870 -11.557 -1.388 -6.870 -0.797 0.002 O18 VNG 21 VNG S14 S1 S 0 1 Y N N N N N -11.626 -15.604 -1.786 -1.950 -0.574 -0.021 S14 VNG 22 VNG H7 H1 H 0 1 N N N N N N -11.226 -19.873 -0.636 0.242 3.338 0.075 H7 VNG 23 VNG H8 H2 H 0 1 N N N N N N -12.835 -21.593 -1.270 2.685 3.597 0.075 H8 VNG 24 VNG H17 H3 H 0 1 N N N N N N -8.195 -11.118 -0.179 -6.831 -2.957 -0.047 H17 VNG 25 VNG H22B H4 H 0 0 N N N N N N -18.010 -19.272 -3.134 7.811 -2.038 -1.060 H22B VNG 26 VNG H22A H5 H 0 0 N N N N N N -18.958 -19.394 -4.655 7.511 -0.354 -0.371 H22A VNG 27 VNG H11 H6 H 0 1 N N N N N N -9.934 -18.221 0.034 -1.789 3.028 0.069 H11 VNG 28 VNG H12 H7 H 0 1 N N N N N N -8.752 -15.941 0.374 -4.202 2.242 0.056 H12 VNG 29 VNG H20 H8 H 0 1 N N N N N N -17.259 -17.945 -5.880 5.334 -2.553 -0.878 H20 VNG 30 VNG H21B H9 H 0 0 N N N N N N -18.265 -16.688 -3.183 6.883 -3.071 1.063 H21B VNG 31 VNG H21A H10 H 0 0 N N N N N N -19.213 -16.810 -4.704 6.583 -1.387 1.752 H21A VNG 32 VNG H5 H11 H 0 1 N N N N N N -13.643 -17.003 -2.715 0.811 -0.922 -0.037 H5 VNG 33 VNG H3 H12 H 0 1 N N N N N N -16.104 -19.667 -3.480 3.105 -1.669 0.002 H3 VNG 34 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VNG O1 C2 DOUB N N 1 VNG C2 N3 SING N N 2 VNG N3 C4 SING N N 3 VNG C4 C5 DOUB Y N 4 VNG C5 C6 SING Y N 5 VNG C6 C7 DOUB Y N 6 VNG C7 C8 SING Y N 7 VNG C8 N9 DOUB Y N 8 VNG C6 C10 SING N N 9 VNG C10 C11 DOUB Y N 10 VNG C11 C12 SING Y N 11 VNG C12 C13 DOUB Y N 12 VNG C13 S14 SING Y N 13 VNG C13 C15 SING N N 14 VNG C15 N16 SING Y N 15 VNG N16 C17 DOUB Y N 16 VNG C17 O18 SING Y N 17 VNG O18 N19 SING Y N 18 VNG C2 C20 SING N N 19 VNG C20 C21 SING N N 20 VNG C21 C22 SING N N 21 VNG N9 C4 SING Y N 22 VNG S14 C10 SING Y N 23 VNG N19 C15 DOUB Y N 24 VNG C22 C20 SING N N 25 VNG C7 H7 SING N N 26 VNG C8 H8 SING N N 27 VNG C17 H17 SING N N 28 VNG C22 H22B SING N N 29 VNG C22 H22A SING N N 30 VNG C11 H11 SING N N 31 VNG C12 H12 SING N N 32 VNG C20 H20 SING N N 33 VNG C21 H21B SING N N 34 VNG C21 H21A SING N N 35 VNG C5 H5 SING N N 36 VNG N3 H3 SING N N 37 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VNG InChI InChI 1.06 "InChI=1S/C15H12N4O2S/c20-15(9-1-2-9)18-13-7-10(5-6-16-13)11-3-4-12(22-11)14-17-8-21-19-14/h3-9H,1-2H2,(H,16,18,20)" VNG InChIKey InChI 1.06 MRPLZYZSVZVELT-UHFFFAOYSA-N VNG SMILES_CANONICAL CACTVS 3.385 "O=C(Nc1cc(ccn1)c2sc(cc2)c3nocn3)C4CC4" VNG SMILES CACTVS 3.385 "O=C(Nc1cc(ccn1)c2sc(cc2)c3nocn3)C4CC4" VNG SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(sc1c2ccnc(c2)NC(=O)C3CC3)c4ncon4" VNG SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(sc1c2ccnc(c2)NC(=O)C3CC3)c4ncon4" # _pdbx_chem_comp_identifier.comp_id VNG _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{N}-[4-[5-(1,2,4-oxadiazol-3-yl)thiophen-2-yl]pyridin-2-yl]cyclopropanecarboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VNG "Create component" 2023-09-14 PDBE VNG "Initial release" 2024-09-04 RCSB #