data_VNQ # _chem_comp.id VNQ _chem_comp.name "(2~{R},3~{S},4~{R},5~{R})-2,5-bis(hydroxymethyl)-1-methyl-pyrrolidine-3,4-diol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C7 H15 N O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-08-01 _chem_comp.pdbx_modified_date 2024-04-05 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 177.198 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VNQ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8K7K _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VNQ CAA C1 C 0 1 N N R N N N 26.902 -18.272 -4.462 -1.189 -0.045 -0.504 CAA VNQ 1 VNQ CAB C2 C 0 1 N N S N N N 27.871 -19.274 -3.917 -0.385 -1.369 -0.554 CAB VNQ 2 VNQ CAC C3 C 0 1 N N R N N N 28.974 -18.388 -3.355 1.075 -0.852 -0.466 CAC VNQ 3 VNQ CAD C4 C 0 1 N N R N N N 28.112 -17.392 -2.591 0.959 0.360 0.482 CAD VNQ 4 VNQ CAF C5 C 0 1 N N N N N N 25.488 -18.841 -4.530 -2.606 -0.302 0.013 CAF VNQ 5 VNQ CAI C6 C 0 1 N N N N N N 28.865 -16.093 -2.258 1.883 1.482 0.007 CAI VNQ 6 VNQ CAL C7 C 0 1 N N N N N N 27.051 -15.909 -4.274 -0.529 2.226 0.047 CAL VNQ 7 VNQ NAE N1 N 0 1 N N N N N N 26.938 -17.158 -3.490 -0.444 0.813 0.441 NAE VNQ 8 VNQ OAG O1 O 0 1 N N N N N N 27.242 -20.024 -2.835 -0.702 -2.202 0.563 OAG VNQ 9 VNQ OAH O2 O 0 1 N N N N N N 29.855 -19.139 -2.496 1.931 -1.851 0.093 OAH VNQ 10 VNQ OAJ O3 O 0 1 N N N N N N 24.652 -17.838 -5.140 -3.365 0.907 -0.059 OAJ VNQ 11 VNQ OAK O4 O 0 1 N N N N N N 29.843 -16.348 -1.233 3.224 0.995 -0.070 OAK VNQ 12 VNQ H1 H1 H 0 1 N N N N N N 27.220 -17.931 -5.458 -1.222 0.416 -1.491 H1 VNQ 13 VNQ H2 H2 H 0 1 N N N N N N 28.257 -19.934 -4.708 -0.558 -1.895 -1.493 H2 VNQ 14 VNQ H3 H3 H 0 1 N N N N N N 29.521 -17.886 -4.167 1.433 -0.541 -1.447 H3 VNQ 15 VNQ H4 H4 H 0 1 N N N N N N 27.770 -17.856 -1.654 1.225 0.064 1.496 H4 VNQ 16 VNQ H5 H5 H 0 1 N N N N N N 25.125 -19.069 -3.517 -3.083 -1.067 -0.599 H5 VNQ 17 VNQ H6 H6 H 0 1 N N N N N N 25.480 -19.758 -5.137 -2.559 -0.641 1.048 H6 VNQ 18 VNQ H7 H7 H 0 1 N N N N N N 29.371 -15.722 -3.162 1.563 1.824 -0.977 H7 VNQ 19 VNQ H8 H8 H 0 1 N N N N N N 28.150 -15.337 -1.901 1.838 2.313 0.712 H8 VNQ 20 VNQ H9 H9 H 0 1 N N N N N N 27.081 -15.048 -3.590 -1.566 2.556 0.099 H9 VNQ 21 VNQ H10 H10 H 0 1 N N N N N N 27.973 -15.934 -4.873 0.079 2.829 0.723 H10 VNQ 22 VNQ H11 H11 H 0 1 N N N N N N 26.182 -15.816 -4.942 -0.161 2.342 -0.972 H11 VNQ 23 VNQ H13 H13 H 0 1 N N N N N N 27.858 -20.660 -2.490 -0.223 -3.042 0.575 H13 VNQ 24 VNQ H14 H14 H 0 1 N N N N N N 30.533 -18.566 -2.158 1.979 -2.664 -0.428 H14 VNQ 25 VNQ H15 H15 H 0 1 N N N N N N 23.760 -18.161 -5.198 -4.276 0.818 0.254 H15 VNQ 26 VNQ H16 H16 H 0 1 N N N N N N 30.306 -15.544 -1.030 3.866 1.655 -0.366 H16 VNQ 27 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VNQ OAJ CAF SING N N 1 VNQ CAF CAA SING N N 2 VNQ CAA CAB SING N N 3 VNQ CAA NAE SING N N 4 VNQ CAL NAE SING N N 5 VNQ CAB CAC SING N N 6 VNQ CAB OAG SING N N 7 VNQ NAE CAD SING N N 8 VNQ CAC CAD SING N N 9 VNQ CAC OAH SING N N 10 VNQ CAD CAI SING N N 11 VNQ CAI OAK SING N N 12 VNQ CAA H1 SING N N 13 VNQ CAB H2 SING N N 14 VNQ CAC H3 SING N N 15 VNQ CAD H4 SING N N 16 VNQ CAF H5 SING N N 17 VNQ CAF H6 SING N N 18 VNQ CAI H7 SING N N 19 VNQ CAI H8 SING N N 20 VNQ CAL H9 SING N N 21 VNQ CAL H10 SING N N 22 VNQ CAL H11 SING N N 23 VNQ OAG H13 SING N N 24 VNQ OAH H14 SING N N 25 VNQ OAJ H15 SING N N 26 VNQ OAK H16 SING N N 27 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VNQ InChI InChI 1.06 "InChI=1S/C7H15NO4/c1-8-4(2-9)6(11)7(12)5(8)3-10/h4-7,9-12H,2-3H2,1H3/t4-,5-,6-,7+/m1/s1" VNQ InChIKey InChI 1.06 YWBPEHFIHKFMMC-GBNDHIKLSA-N VNQ SMILES_CANONICAL CACTVS 3.385 "CN1[C@H](CO)[C@H](O)[C@H](O)[C@H]1CO" VNQ SMILES CACTVS 3.385 "CN1[CH](CO)[CH](O)[CH](O)[CH]1CO" VNQ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN1[C@@H]([C@H]([C@H]([C@H]1CO)O)O)CO" VNQ SMILES "OpenEye OEToolkits" 2.0.7 "CN1C(C(C(C1CO)O)O)CO" # _pdbx_chem_comp_identifier.comp_id VNQ _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{R},3~{R},4~{S},5~{R})-2,5-bis(hydroxymethyl)-1-methyl-pyrrolidine-3,4-diol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VNQ "Create component" 2023-08-01 PDBJ VNQ "Initial release" 2024-04-10 RCSB #