data_VNS # _chem_comp.id VNS _chem_comp.name "(2R)-2-(5-fluoro-2-hydroxyphenyl)-2-{6-[4-(1-methylpiperidin-4-yl)phenyl]-1-oxo-1,3-dihydro-2H-isoindol-2-yl}-N-(1,3-thiazol-2-yl)acetamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C31 H29 F N4 O3 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-08-31 _chem_comp.pdbx_modified_date 2021-09-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 556.650 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VNS _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7JXQ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VNS O01 O1 O 0 1 N N N 20.129 -29.536 -16.643 -3.551 1.542 0.562 O01 VNS 1 VNS C02 C1 C 0 1 N N N 21.183 -29.705 -17.220 -4.320 0.610 0.665 C02 VNS 2 VNS C04 C2 C 0 1 Y N N 22.481 -27.971 -15.985 -6.107 2.041 0.050 C04 VNS 3 VNS C06 C3 C 0 1 Y N N 23.178 -26.383 -14.444 -7.622 3.567 -0.539 C06 VNS 4 VNS C07 C4 C 0 1 Y N N 21.916 -26.635 -13.878 -6.565 4.381 -0.565 C07 VNS 5 VNS C09 C5 C 0 1 N N R 21.311 -30.843 -18.324 -3.806 -0.748 1.072 C09 VNS 6 VNS C11 C6 C 0 1 N N N 19.558 -30.397 -20.161 -1.442 -0.437 0.324 C11 VNS 7 VNS C12 C7 C 0 1 Y N N 18.221 -30.917 -20.582 -0.085 -0.446 0.903 C12 VNS 8 VNS C13 C8 C 0 1 Y N N 17.364 -30.579 -21.656 1.176 -0.251 0.340 C13 VNS 9 VNS C14 C9 C 0 1 Y N N 16.114 -31.206 -21.836 2.308 -0.318 1.144 C14 VNS 10 VNS C16 C10 C 0 1 Y N N 14.952 -29.611 -23.637 4.789 -0.178 1.354 C16 VNS 11 VNS C18 C11 C 0 1 Y N N 13.615 -30.568 -25.525 6.160 0.285 -0.555 C18 VNS 12 VNS C19 C12 C 0 1 N N N 12.736 -30.520 -26.829 7.525 0.494 -1.158 C19 VNS 13 VNS C20 C13 C 0 1 N N N 11.596 -29.582 -26.454 8.196 1.701 -0.498 C20 VNS 14 VNS C21 C14 C 0 1 N N N 10.764 -29.000 -27.627 9.605 1.872 -1.071 C21 VNS 15 VNS C23 C15 C 0 1 N N N 12.199 -27.404 -28.560 10.542 0.418 0.623 C23 VNS 16 VNS C24 C16 C 0 1 N N N 12.533 -29.583 -29.286 9.788 -0.509 -1.482 C24 VNS 17 VNS C25 C17 C 0 1 N N N 13.436 -30.065 -28.124 8.385 -0.751 -0.922 C25 VNS 18 VNS C15 C18 C 0 1 Y N N 15.238 -30.877 -23.062 3.652 -0.111 0.551 C15 VNS 19 VNS C17 C19 C 0 1 Y N N 14.153 -29.459 -24.821 6.037 0.020 0.797 C17 VNS 20 VNS C26 C20 C 0 1 Y N N 13.943 -31.823 -24.974 5.035 0.340 -1.359 C26 VNS 21 VNS C27 C21 C 0 1 Y N N 14.732 -31.963 -23.810 3.783 0.149 -0.812 C27 VNS 22 VNS C28 C22 C 0 1 Y N N 15.798 -32.246 -20.905 2.182 -0.579 2.509 C28 VNS 23 VNS C29 C23 C 0 1 Y N N 16.638 -32.598 -19.809 0.931 -0.772 3.064 C29 VNS 24 VNS C30 C24 C 0 1 Y N N 17.878 -31.921 -19.652 -0.194 -0.707 2.272 C30 VNS 25 VNS C31 C25 C 0 1 N N N 18.981 -32.057 -18.613 -1.667 -0.867 2.559 C31 VNS 26 VNS C33 C26 C 0 1 Y N N 21.836 -32.188 -17.667 -4.114 -1.747 -0.012 C33 VNS 27 VNS C34 C27 C 0 1 Y N N 22.100 -32.289 -16.310 -4.451 -1.311 -1.279 C34 VNS 28 VNS C35 C28 C 0 1 Y N N 22.566 -33.493 -15.722 -4.734 -2.230 -2.276 C35 VNS 29 VNS C37 C29 C 0 1 Y N N 22.780 -34.643 -16.516 -4.679 -3.586 -2.005 C37 VNS 30 VNS C38 C30 C 0 1 Y N N 22.522 -34.581 -17.887 -4.342 -4.025 -0.739 C38 VNS 31 VNS C39 C31 C 0 1 Y N N 22.054 -33.363 -18.444 -4.053 -3.106 0.259 C39 VNS 32 VNS F36 F1 F 0 1 N N N 22.802 -33.513 -14.427 -5.064 -1.801 -3.514 F36 VNS 33 VNS N03 N1 N 0 1 N N N 22.387 -28.930 -16.993 -5.633 0.788 0.421 N03 VNS 34 VNS N05 N2 N 0 1 Y N N 23.487 -27.161 -15.617 -7.347 2.320 -0.206 N05 VNS 35 VNS N10 N3 N 0 1 N N N 20.037 -31.053 -18.992 -2.358 -0.680 1.278 N10 VNS 36 VNS N22 N4 N 0 1 N N N 11.489 -28.657 -28.862 10.388 0.655 -0.819 N22 VNS 37 VNS O32 O2 O 0 1 N N N 20.235 -29.503 -20.666 -1.696 -0.235 -0.847 O32 VNS 38 VNS O40 O3 O 0 1 N N N 21.787 -33.272 -19.790 -3.721 -3.537 1.505 O40 VNS 39 VNS S08 S1 S 0 1 Y N N 21.100 -27.834 -14.801 -5.141 3.441 -0.126 S08 VNS 40 VNS H1 H1 H 0 1 N N N 23.865 -25.660 -14.030 -8.623 3.902 -0.771 H1 VNS 41 VNS H2 H2 H 0 1 N N N 21.520 -26.150 -12.998 -6.580 5.432 -0.811 H2 VNS 42 VNS H3 H3 H 0 1 N N N 22.060 -30.514 -19.059 -4.291 -1.056 1.999 H3 VNS 43 VNS H4 H4 H 0 1 N N N 17.676 -29.819 -22.358 1.272 -0.049 -0.716 H4 VNS 44 VNS H5 H5 H 0 1 N N N 15.352 -28.726 -23.165 4.694 -0.380 2.410 H5 VNS 45 VNS H6 H6 H 0 1 N N N 12.321 -31.525 -26.995 7.426 0.672 -2.229 H6 VNS 46 VNS H7 H7 H 0 1 N N N 12.028 -28.736 -25.899 7.610 2.598 -0.699 H7 VNS 47 VNS H8 H8 H 0 1 N N N 10.908 -30.137 -25.799 8.257 1.540 0.578 H8 VNS 48 VNS H9 H9 H 0 1 N N N 10.277 -28.083 -27.264 9.541 2.047 -2.145 H9 VNS 49 VNS H10 H10 H 0 1 N N N 9.997 -29.744 -27.889 10.091 2.722 -0.592 H10 VNS 50 VNS H11 H11 H 0 1 N N N 11.477 -26.643 -28.229 11.188 -0.446 0.782 H11 VNS 51 VNS H12 H12 H 0 1 N N N 12.935 -27.583 -27.762 10.988 1.296 1.090 H12 VNS 52 VNS H13 H13 H 0 1 N N N 12.717 -27.049 -29.463 9.565 0.228 1.066 H13 VNS 53 VNS H14 H14 H 0 1 N N N 12.055 -30.462 -29.744 10.407 -1.388 -1.303 H14 VNS 54 VNS H15 H15 H 0 1 N N N 13.164 -29.079 -30.032 9.724 -0.323 -2.555 H15 VNS 55 VNS H16 H16 H 0 1 N N N 14.028 -30.914 -28.496 8.450 -0.951 0.148 H16 VNS 56 VNS H17 H17 H 0 1 N N N 14.109 -29.235 -27.862 7.934 -1.606 -1.426 H17 VNS 57 VNS H18 H18 H 0 1 N N N 13.954 -28.463 -25.189 6.918 -0.031 1.419 H18 VNS 58 VNS H19 H19 H 0 1 N N N 13.576 -32.714 -25.461 5.137 0.547 -2.414 H19 VNS 59 VNS H20 H20 H 0 1 N N N 14.962 -32.962 -23.471 2.905 0.193 -1.440 H20 VNS 60 VNS H21 H21 H 0 1 N N N 14.876 -32.792 -21.040 3.062 -0.630 3.132 H21 VNS 61 VNS H22 H22 H 0 1 N N N 16.338 -33.365 -19.110 0.835 -0.975 4.120 H22 VNS 62 VNS H23 H23 H 0 1 N N N 18.589 -31.838 -17.609 -1.866 -1.865 2.950 H23 VNS 63 VNS H24 H24 H 0 1 N N N 19.398 -33.075 -18.630 -1.993 -0.112 3.275 H24 VNS 64 VNS H25 H25 H 0 1 N N N 21.946 -31.425 -15.681 -4.495 -0.253 -1.491 H25 VNS 65 VNS H26 H26 H 0 1 N N N 23.138 -35.558 -16.068 -4.899 -4.301 -2.783 H26 VNS 66 VNS H27 H27 H 0 1 N N N 22.676 -35.447 -18.514 -4.299 -5.083 -0.528 H27 VNS 67 VNS H28 H28 H 0 1 N N N 23.180 -29.089 -17.581 -6.247 0.042 0.503 H28 VNS 68 VNS H30 H30 H 0 1 N N N 21.485 -32.395 -19.995 -2.773 -3.677 1.633 H30 VNS 69 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VNS C24 N22 SING N N 1 VNS C24 C25 SING N N 2 VNS N22 C23 SING N N 3 VNS N22 C21 SING N N 4 VNS C25 C19 SING N N 5 VNS C21 C20 SING N N 6 VNS C19 C20 SING N N 7 VNS C19 C18 SING N N 8 VNS C18 C26 DOUB Y N 9 VNS C18 C17 SING Y N 10 VNS C26 C27 SING Y N 11 VNS C17 C16 DOUB Y N 12 VNS C27 C15 DOUB Y N 13 VNS C16 C15 SING Y N 14 VNS C15 C14 SING N N 15 VNS C14 C13 DOUB Y N 16 VNS C14 C28 SING Y N 17 VNS C13 C12 SING Y N 18 VNS C28 C29 DOUB Y N 19 VNS O32 C11 DOUB N N 20 VNS C12 C11 SING N N 21 VNS C12 C30 DOUB Y N 22 VNS C11 N10 SING N N 23 VNS C29 C30 SING Y N 24 VNS O40 C39 SING N N 25 VNS C30 C31 SING N N 26 VNS N10 C31 SING N N 27 VNS N10 C09 SING N N 28 VNS C39 C38 DOUB Y N 29 VNS C39 C33 SING Y N 30 VNS C09 C33 SING N N 31 VNS C09 C02 SING N N 32 VNS C38 C37 SING Y N 33 VNS C33 C34 DOUB Y N 34 VNS C02 N03 SING N N 35 VNS C02 O01 DOUB N N 36 VNS N03 C04 SING N N 37 VNS C37 C35 DOUB Y N 38 VNS C34 C35 SING Y N 39 VNS C04 N05 DOUB Y N 40 VNS C04 S08 SING Y N 41 VNS C35 F36 SING N N 42 VNS N05 C06 SING Y N 43 VNS S08 C07 SING Y N 44 VNS C06 C07 DOUB Y N 45 VNS C06 H1 SING N N 46 VNS C07 H2 SING N N 47 VNS C09 H3 SING N N 48 VNS C13 H4 SING N N 49 VNS C16 H5 SING N N 50 VNS C19 H6 SING N N 51 VNS C20 H7 SING N N 52 VNS C20 H8 SING N N 53 VNS C21 H9 SING N N 54 VNS C21 H10 SING N N 55 VNS C23 H11 SING N N 56 VNS C23 H12 SING N N 57 VNS C23 H13 SING N N 58 VNS C24 H14 SING N N 59 VNS C24 H15 SING N N 60 VNS C25 H16 SING N N 61 VNS C25 H17 SING N N 62 VNS C17 H18 SING N N 63 VNS C26 H19 SING N N 64 VNS C27 H20 SING N N 65 VNS C28 H21 SING N N 66 VNS C29 H22 SING N N 67 VNS C31 H23 SING N N 68 VNS C31 H24 SING N N 69 VNS C34 H25 SING N N 70 VNS C37 H26 SING N N 71 VNS C38 H27 SING N N 72 VNS N03 H28 SING N N 73 VNS O40 H30 SING N N 74 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VNS SMILES ACDLabs 12.01 "O=C(Nc1nccs1)C(c2cc(F)ccc2O)N6C(c3c(ccc(c3)c4ccc(cc4)C5CCN(C)CC5)C6)=O" VNS InChI InChI 1.03 "InChI=1S/C31H29FN4O3S/c1-35-13-10-21(11-14-35)19-2-4-20(5-3-19)22-6-7-23-18-36(30(39)25(23)16-22)28(26-17-24(32)8-9-27(26)37)29(38)34-31-33-12-15-40-31/h2-9,12,15-17,21,28,37H,10-11,13-14,18H2,1H3,(H,33,34,38)/t28-/m1/s1" VNS InChIKey InChI 1.03 SYTVDTWRIZNVEW-MUUNZHRXSA-N VNS SMILES_CANONICAL CACTVS 3.385 "CN1CCC(CC1)c2ccc(cc2)c3ccc4CN([C@@H](C(=O)Nc5sccn5)c6cc(F)ccc6O)C(=O)c4c3" VNS SMILES CACTVS 3.385 "CN1CCC(CC1)c2ccc(cc2)c3ccc4CN([CH](C(=O)Nc5sccn5)c6cc(F)ccc6O)C(=O)c4c3" VNS SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN1CCC(CC1)c2ccc(cc2)c3ccc4c(c3)C(=O)N(C4)[C@H](c5cc(ccc5O)F)C(=O)Nc6nccs6" VNS SMILES "OpenEye OEToolkits" 2.0.7 "CN1CCC(CC1)c2ccc(cc2)c3ccc4c(c3)C(=O)N(C4)C(c5cc(ccc5O)F)C(=O)Nc6nccs6" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier VNS "SYSTEMATIC NAME" ACDLabs 12.01 "(2R)-2-(5-fluoro-2-hydroxyphenyl)-2-{6-[4-(1-methylpiperidin-4-yl)phenyl]-1-oxo-1,3-dihydro-2H-isoindol-2-yl}-N-(1,3-thiazol-2-yl)acetamide" VNS "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{R})-2-(5-fluoranyl-2-oxidanyl-phenyl)-2-[5-[4-(1-methylpiperidin-4-yl)phenyl]-3-oxidanylidene-1~{H}-isoindol-2-yl]-~{N}-(1,3-thiazol-2-yl)ethanamide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VNS "Create component" 2020-08-31 RCSB VNS "Initial release" 2021-09-08 RCSB ##