data_VNW # _chem_comp.id VNW _chem_comp.name "8-azanyl-4-methylselanyl-quinoline-2-carboxylic acid" _chem_comp.type "peptide linking" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C11 H10 N2 O2 Se" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-09-14 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 281.169 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VNW _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8QHM _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VNW N N1 N 0 1 N N N Y Y N 29.761 -13.269 7.617 3.299 -2.492 0.152 N VNW 1 VNW CA C1 C 0 1 Y N N Y N N 25.648 -13.347 6.674 1.528 1.225 -0.028 CA VNW 2 VNW C C2 C 0 1 N N N Y N Y 24.696 -14.423 6.949 2.404 2.419 0.009 C VNW 3 VNW O O1 O 0 1 N N N Y N Y 23.583 -13.975 7.255 1.917 3.530 -0.038 O VNW 4 VNW NB N2 N 0 1 Y N N Y N N 26.901 -13.335 6.997 2.072 0.024 0.029 NB VNW 5 VNW CG C3 C 0 1 Y N N Y N N 27.663 -12.259 6.704 1.325 -1.076 -0.001 CG VNW 6 VNW CD C4 C 0 1 Y N N Y N N 29.062 -12.199 6.999 1.916 -2.360 0.060 CD VNW 7 VNW C06 C5 C 0 1 Y N N N N N 27.089 -11.149 6.059 -0.087 -0.973 -0.096 C06 VNW 8 VNW C07 C6 C 0 1 Y N N N N N 27.844 -10.022 5.712 -0.869 -2.137 -0.126 C07 VNW 9 VNW C08 C7 C 0 1 Y N N N N N 29.202 -9.921 6.060 -0.271 -3.360 -0.066 C08 VNW 10 VNW C09 C8 C 0 1 Y N N N N N 29.801 -11.031 6.655 1.112 -3.478 0.027 C09 VNW 11 VNW C12 C9 C 0 1 Y N N N N N 25.736 -11.125 5.729 -0.679 0.304 -0.157 C12 VNW 12 VNW C14 C10 C 0 1 N N N N N N 23.201 -9.842 4.562 -3.122 0.578 1.606 C14 VNW 13 VNW C15 C11 C 0 1 Y N N N N N 24.954 -12.265 6.054 0.138 1.397 -0.116 C15 VNW 14 VNW SE1 SE1 SE 0 0 N N N N N N 25.082 -9.470 4.883 -2.624 0.507 -0.289 SE1 VNW 15 VNW H2 H1 H 0 1 N Y N Y Y N 29.126 -14.019 7.803 3.861 -1.702 0.175 H2 VNW 16 VNW H H2 H 0 1 N N N Y Y N 30.486 -13.589 7.008 3.700 -3.375 0.198 H VNW 17 VNW H07 H6 H 0 1 N N N N N N 27.375 -9.216 5.167 -1.944 -2.065 -0.198 H07 VNW 18 VNW H08 H7 H 0 1 N N N N N N 29.762 -9.016 5.873 -0.881 -4.252 -0.090 H08 VNW 19 VNW H09 H8 H 0 1 N N N N N N 30.861 -11.004 6.862 1.562 -4.460 0.073 H09 VNW 20 VNW H14 H9 H 0 1 N N N N N N 22.731 -8.970 4.084 -2.627 1.426 2.079 H14 VNW 21 VNW H15 H10 H 0 1 N N N N N N 23.108 -10.716 3.901 -4.202 0.693 1.693 H15 VNW 22 VNW H16 H11 H 0 1 N N N N N N 22.700 -10.051 5.519 -2.812 -0.344 2.098 H16 VNW 23 VNW H17 H12 H 0 1 N N N N N N 23.896 -12.311 5.844 -0.284 2.390 -0.157 H17 VNW 24 VNW OXT OXT O 0 1 N Y N Y N Y 24.908 -15.712 6.824 3.740 2.272 0.093 OXT VNW 25 VNW HXT HXT H 0 1 N Y N Y N Y 24.103 -16.184 7.001 4.270 3.080 0.114 HXT VNW 26 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VNW NB CA DOUB Y N 1 VNW CG NB SING Y N 2 VNW C06 CG DOUB Y N 3 VNW C08 C07 DOUB Y N 4 VNW C09 C08 SING Y N 5 VNW CD C09 DOUB Y N 6 VNW N CD SING N N 7 VNW C07 C06 SING Y N 8 VNW C12 C06 SING Y N 9 VNW C14 SE1 SING N N 10 VNW SE1 C12 SING N N 11 VNW C15 C12 DOUB Y N 12 VNW CA C SING N N 13 VNW O C DOUB N N 14 VNW CA C15 SING Y N 15 VNW CG CD SING Y N 16 VNW N H2 SING N N 17 VNW N H SING N N 18 VNW C07 H07 SING N N 19 VNW C08 H08 SING N N 20 VNW C09 H09 SING N N 21 VNW C14 H14 SING N N 22 VNW C14 H15 SING N N 23 VNW C14 H16 SING N N 24 VNW C15 H17 SING N N 25 VNW C OXT SING N N 26 VNW OXT HXT SING N N 27 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VNW InChI InChI 1.06 "InChI=1S/C11H10N2O2Se/c1-16-9-5-8(11(14)15)13-10-6(9)3-2-4-7(10)12/h2-5H,12H2,1H3,(H,14,15)" VNW InChIKey InChI 1.06 XNDKSZNZLHRFIR-UHFFFAOYSA-N VNW SMILES_CANONICAL CACTVS 3.385 "C[Se]c1cc(nc2c(N)cccc12)C(O)=O" VNW SMILES CACTVS 3.385 "C[Se]c1cc(nc2c(N)cccc12)C(O)=O" VNW SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[Se]c1cc(nc2c1cccc2N)C(=O)O" VNW SMILES "OpenEye OEToolkits" 2.0.7 "C[Se]c1cc(nc2c1cccc2N)C(=O)O" # _pdbx_chem_comp_identifier.comp_id VNW _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "8-azanyl-4-methylselanyl-quinoline-2-carboxylic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VNW "Create component" 2023-09-14 PDBE VNW "Modify linking type" 2023-09-15 PDBE VNW "Modify leaving atom flag" 2023-09-18 PDBE VNW "Initial release" 2023-10-11 RCSB VNW "Modify backbone" 2023-11-03 PDBE VNW "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id VNW _pdbx_chem_comp_pcm.modified_residue_id ? _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Non-standard residue" _pdbx_chem_comp_pcm.position "Amino-acid side chain and backbone" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom ? _pdbx_chem_comp_pcm.modified_residue_id_linking_atom ? _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #