data_VNY # _chem_comp.id VNY _chem_comp.name "PARA-BIPHENYL METHYLENE C-LINKED MANNOSIDE" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H24 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2015-07-27 _chem_comp.pdbx_modified_date 2016-03-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 356.412 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VNY _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5AAP _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VNY O6 O6 O 0 1 N N N 14.407 2.862 9.440 -3.729 -3.290 1.189 O6 VNY 1 VNY C6 C6 C 0 1 N N N 15.059 2.802 10.714 -4.407 -2.057 1.441 C6 VNY 2 VNY C5 C5 C 0 1 N N R 15.081 1.379 11.227 -3.601 -0.901 0.846 C5 VNY 3 VNY O5 O5 O 0 1 N N N 13.718 0.986 11.342 -3.563 -1.027 -0.576 O5 VNY 4 VNY C4 C4 C 0 1 N N S 15.852 0.434 10.312 -4.262 0.428 1.222 C4 VNY 5 VNY O4 O4 O 0 1 N N N 17.227 0.827 10.283 -4.249 0.584 2.642 O4 VNY 6 VNY C3 C3 C 0 1 N N R 15.756 -0.964 10.881 -3.484 1.578 0.574 C3 VNY 7 VNY O3 O3 O 0 1 N N N 16.385 -1.874 9.972 -4.137 2.817 0.858 O3 VNY 8 VNY C2 C2 C 0 1 N N S 14.299 -1.357 11.098 -3.439 1.358 -0.942 C2 VNY 9 VNY O2 O2 O 0 1 N N N 13.665 -1.430 9.807 -4.766 1.395 -1.469 O2 VNY 10 VNY C1 C1 C 0 1 N N R 13.530 -0.321 11.909 -2.809 -0.006 -1.233 C1 VNY 11 VNY C7 C7 C 0 1 N N N 13.982 -0.274 13.371 -1.391 -0.024 -0.726 C7 VNY 12 VNY C8 C8 C 0 1 N N N 13.352 0.521 14.284 -0.399 -0.357 -1.541 C8 VNY 13 VNY C21 C21 C 0 1 N N N 12.175 1.315 13.820 -0.701 -0.851 -2.932 C21 VNY 14 VNY C9 C9 C 0 1 Y N N 13.833 0.654 15.708 1.002 -0.245 -1.085 C9 VNY 15 VNY C10 C10 C 0 1 Y N N 13.003 1.111 16.737 1.786 -1.392 -0.949 C10 VNY 16 VNY C11 C11 C 0 1 Y N N 13.480 1.252 18.035 3.092 -1.286 -0.525 C11 VNY 17 VNY C12 C12 C 0 1 Y N N 14.804 0.986 18.328 3.631 -0.034 -0.230 C12 VNY 18 VNY C13 C13 C 0 1 Y N N 15.643 0.558 17.306 2.848 1.112 -0.365 C13 VNY 19 VNY C14 C14 C 0 1 Y N N 15.166 0.412 16.008 1.543 1.009 -0.795 C14 VNY 20 VNY C15 C15 C 0 1 Y N N 15.291 1.125 19.726 5.037 0.079 0.228 C15 VNY 21 VNY C20 C20 C 0 1 Y N N 14.780 2.112 20.562 5.578 1.329 0.524 C20 VNY 22 VNY C19 C19 C 0 1 Y N N 15.216 2.213 21.879 6.887 1.428 0.949 C19 VNY 23 VNY C18 C18 C 0 1 Y N N 16.169 1.324 22.373 7.661 0.289 1.083 C18 VNY 24 VNY C17 C17 C 0 1 Y N N 16.671 0.331 21.540 7.130 -0.954 0.791 C17 VNY 25 VNY C16 C16 C 0 1 Y N N 16.227 0.228 20.224 5.820 -1.065 0.370 C16 VNY 26 VNY H6 H6 H 0 1 N N N 14.400 3.760 9.129 -4.184 -4.068 1.538 H6 VNY 27 VNY H61C H61C H 0 0 N N N 16.092 3.166 10.610 -5.395 -2.086 0.980 H61C VNY 28 VNY H62C H62C H 0 0 N N N 14.516 3.437 11.430 -4.511 -1.913 2.516 H62C VNY 29 VNY H5 H5 H 0 1 N N N 15.557 1.370 12.219 -2.585 -0.925 1.241 H5 VNY 30 VNY H4 H4 H 0 1 N N N 15.414 0.457 9.303 -5.292 0.436 0.864 H4 VNY 31 VNY H1 H1 H 0 1 N N N 12.462 -0.583 11.885 -2.813 -0.186 -2.308 H1 VNY 32 VNY HA HA H 0 1 N N N 17.712 0.241 9.714 -4.654 1.406 2.951 HA VNY 33 VNY H3 H3 H 0 1 N N N 16.274 -0.987 11.851 -2.470 1.601 0.971 H3 VNY 34 VNY HB HB H 0 1 N N N 16.331 -2.757 10.319 -3.698 3.589 0.477 HB VNY 35 VNY H2 H2 H 0 1 N N N 14.254 -2.330 11.609 -2.841 2.143 -1.405 H2 VNY 36 VNY HC HC H 0 1 N N N 12.753 -1.674 9.915 -4.813 1.262 -2.426 HC VNY 37 VNY H7 H7 H 0 1 N N N 14.817 -0.883 13.686 -1.181 0.235 0.301 H7 VNY 38 VNY H211 H211 H 0 0 N N N 11.775 1.903 14.659 -0.822 0.001 -3.602 H211 VNY 39 VNY H212 H212 H 0 0 N N N 12.486 1.994 13.013 0.122 -1.475 -3.283 H212 VNY 40 VNY H213 H213 H 0 0 N N N 11.397 0.633 13.446 -1.620 -1.436 -2.919 H213 VNY 41 VNY H10 H10 H 0 1 N N N 11.974 1.358 16.519 1.370 -2.362 -1.177 H10 VNY 42 VNY H14 H14 H 0 1 N N N 15.842 0.106 15.223 0.938 1.897 -0.903 H14 VNY 43 VNY H11 H11 H 0 1 N N N 12.811 1.572 18.820 3.699 -2.174 -0.419 H11 VNY 44 VNY H13 H13 H 0 1 N N N 16.678 0.336 17.522 3.265 2.082 -0.136 H13 VNY 45 VNY H20 H20 H 0 1 N N N 14.041 2.804 20.187 4.974 2.218 0.419 H20 VNY 46 VNY H16 H16 H 0 1 N N N 16.613 -0.554 19.587 5.404 -2.037 0.147 H16 VNY 47 VNY H19 H19 H 0 1 N N N 14.815 2.983 22.521 7.308 2.396 1.178 H19 VNY 48 VNY H18 H18 H 0 1 N N N 16.514 1.406 23.393 8.685 0.372 1.416 H18 VNY 49 VNY H17 H17 H 0 1 N N N 17.408 -0.363 21.915 7.739 -1.839 0.896 H17 VNY 50 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VNY O6 C6 SING N N 1 VNY C6 C5 SING N N 2 VNY C5 O5 SING N N 3 VNY C5 C4 SING N N 4 VNY O5 C1 SING N N 5 VNY C4 O4 SING N N 6 VNY C4 C3 SING N N 7 VNY C3 O3 SING N N 8 VNY C3 C2 SING N N 9 VNY C2 O2 SING N N 10 VNY C2 C1 SING N N 11 VNY C1 C7 SING N N 12 VNY C7 C8 DOUB N E 13 VNY C8 C21 SING N N 14 VNY C8 C9 SING N N 15 VNY C9 C10 SING Y N 16 VNY C9 C14 DOUB Y N 17 VNY C10 C11 DOUB Y N 18 VNY C11 C12 SING Y N 19 VNY C12 C13 DOUB Y N 20 VNY C12 C15 SING N N 21 VNY C13 C14 SING Y N 22 VNY C15 C20 SING Y N 23 VNY C15 C16 DOUB Y N 24 VNY C20 C19 DOUB Y N 25 VNY C19 C18 SING Y N 26 VNY C18 C17 DOUB Y N 27 VNY C17 C16 SING Y N 28 VNY O6 H6 SING N N 29 VNY C6 H61C SING N N 30 VNY C6 H62C SING N N 31 VNY C5 H5 SING N N 32 VNY C4 H4 SING N N 33 VNY C1 H1 SING N N 34 VNY O4 HA SING N N 35 VNY C3 H3 SING N N 36 VNY O3 HB SING N N 37 VNY C2 H2 SING N N 38 VNY O2 HC SING N N 39 VNY C7 H7 SING N N 40 VNY C21 H211 SING N N 41 VNY C21 H212 SING N N 42 VNY C21 H213 SING N N 43 VNY C10 H10 SING N N 44 VNY C14 H14 SING N N 45 VNY C11 H11 SING N N 46 VNY C13 H13 SING N N 47 VNY C20 H20 SING N N 48 VNY C16 H16 SING N N 49 VNY C19 H19 SING N N 50 VNY C18 H18 SING N N 51 VNY C17 H17 SING N N 52 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VNY InChI InChI 1.03 "InChI=1S/C21H24O5/c1-13(11-17-19(23)21(25)20(24)18(12-22)26-17)14-7-9-16(10-8-14)15-5-3-2-4-6-15/h2-11,17-25H,12H2,1H3/b13-11+/t17-,18-,19-,20-,21-/m1/s1" VNY InChIKey InChI 1.03 CZOUTUOSDBYBBC-OBPXZMPXSA-N VNY SMILES_CANONICAL CACTVS 3.385 "C\C(=C/[C@H]1O[C@H](CO)[C@@H](O)[C@H](O)[C@@H]1O)c2ccc(cc2)c3ccccc3" VNY SMILES CACTVS 3.385 "CC(=C[CH]1O[CH](CO)[CH](O)[CH](O)[CH]1O)c2ccc(cc2)c3ccccc3" VNY SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C/C(=C\[C@@H]1[C@H]([C@H]([C@@H]([C@H](O1)CO)O)O)O)/c2ccc(cc2)c3ccccc3" VNY SMILES "OpenEye OEToolkits" 1.7.6 "CC(=CC1C(C(C(C(O1)CO)O)O)O)c2ccc(cc2)c3ccccc3" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier VNY "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2R,3S,4R,5S,6R)-2-(hydroxymethyl)-6-[(E)-2-(4-phenylphenyl)prop-1-enyl]oxane-3,4,5-triol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VNY "Create component" 2015-07-27 EBI VNY "Initial release" 2016-03-09 RCSB #