data_VNZ # _chem_comp.id VNZ _chem_comp.name Ivabradine _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C27 H36 N2 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "3-[3-[[(7S)-3,4-dimethoxy-7-bicyclo[4.2.0]octa-1,3,5-trienyl]methyl-methyl-amino]propyl]-7,8-dimethoxy-2,5-dihydro-1H-3-benzazepin-4-one; 3-[3-[[(7S)-3,4-dimethoxy-7-bicyclo[4.2.0]octa-1(6),2,4-trienyl]methyl-methyl-amino]propyl]-7,8-dimethoxy-2,5-dihydro-1H-3-benzazepin-4-one" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-03-20 _chem_comp.pdbx_modified_date 2024-08-09 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 468.585 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VNZ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8OFI _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VNZ O1 O1 O 0 1 N N N N N N 168.942 172.200 152.386 -2.914 3.112 0.094 O1 VNZ 1 VNZ C6 C1 C 0 1 N N N N N N 168.136 171.568 153.055 -3.582 2.341 -0.561 C6 VNZ 2 VNZ C5 C2 C 0 1 N N N N N N 168.551 170.385 153.902 -5.038 2.305 -0.241 C5 VNZ 3 VNZ C4 C3 C 0 1 Y N N N N N 168.359 170.413 155.402 -5.530 0.885 -0.090 C4 VNZ 4 VNZ C24 C4 C 0 1 Y N N N N N 169.384 169.907 156.198 -6.038 0.458 1.123 C24 VNZ 5 VNZ C25 C5 C 0 1 Y N N N N N 169.251 169.816 157.570 -6.514 -0.839 1.245 C25 VNZ 6 VNZ O4 O2 O 0 1 N N N N N N 170.081 169.080 158.365 -7.013 -1.276 2.432 O4 VNZ 7 VNZ C26 C6 C 0 1 N N N N N N 170.616 167.882 157.806 -7.018 -0.346 3.517 C26 VNZ 8 VNZ C1 C7 C 0 1 Y N N N N N 168.083 170.279 158.177 -6.477 -1.689 0.144 C1 VNZ 9 VNZ O O3 O 0 1 N N N N N N 168.000 170.121 159.528 -6.953 -2.958 0.250 O VNZ 10 VNZ C C8 C 0 1 N N N N N N 166.714 169.770 160.061 -6.884 -3.777 -0.919 C VNZ 11 VNZ N N1 N 0 1 N N N N N N 166.834 171.874 153.071 -2.936 1.649 -1.464 N VNZ 12 VNZ C22 C9 C 0 1 N N N N N N 166.230 172.501 154.238 -3.356 0.604 -2.378 C22 VNZ 13 VNZ C23 C10 C 0 1 N N N N N N 165.995 171.482 155.339 -4.864 0.482 -2.473 C23 VNZ 14 VNZ C3 C11 C 0 1 Y N N N N N 167.187 170.868 156.021 -5.465 0.053 -1.168 C3 VNZ 15 VNZ C2 C12 C 0 1 Y N N N N N 167.076 170.787 157.402 -5.955 -1.246 -1.059 C2 VNZ 16 VNZ C7 C13 C 0 1 N N N N N N 165.925 171.499 151.985 -1.518 1.997 -1.574 C7 VNZ 17 VNZ C8 C14 C 0 1 N N N N N N 164.594 171.015 152.542 -0.702 1.123 -0.620 C8 VNZ 18 VNZ C9 C15 C 0 1 N N N N N N 163.715 170.234 151.592 0.779 1.487 -0.734 C9 VNZ 19 VNZ N1 N2 N 0 1 N N N N N N 163.994 168.796 151.573 1.562 0.647 0.182 N1 VNZ 20 VNZ C10 C16 C 0 1 N N N N N N 164.341 168.300 152.904 1.235 0.949 1.582 C10 VNZ 21 VNZ C11 C17 C 0 1 N N N N N N 164.897 168.347 150.516 3.002 0.797 -0.067 C11 VNZ 22 VNZ C12 C18 C 0 1 N N S N N N 166.248 167.839 151.032 3.770 -0.265 0.724 C12 VNZ 23 VNZ C21 C19 C 0 1 Y N N N N N 167.600 168.457 150.691 5.266 -0.115 0.621 C21 VNZ 24 VNZ C14 C20 C 0 1 Y N N N N N 168.135 167.251 150.446 5.349 -1.330 -0.037 C14 VNZ 25 VNZ C13 C21 C 0 1 N N N N N N 166.788 166.601 150.234 3.859 -1.608 -0.002 C13 VNZ 26 VNZ C20 C22 C 0 1 Y N N N N N 168.372 169.599 150.835 6.406 0.624 0.876 C20 VNZ 27 VNZ C18 C23 C 0 1 Y N N N N N 169.757 169.434 150.827 7.645 0.154 0.474 C18 VNZ 28 VNZ O3 O4 O 0 1 N N N N N N 170.663 170.446 151.012 8.767 0.881 0.725 O3 VNZ 29 VNZ C19 C24 C 0 1 N N N N N N 171.334 170.520 152.271 8.596 2.123 1.409 C19 VNZ 30 VNZ C16 C25 C 0 1 Y N N N N N 170.321 168.148 150.631 7.735 -1.067 -0.188 C16 VNZ 31 VNZ C15 C26 C 0 1 Y N N N N N 169.502 167.056 150.418 6.592 -1.802 -0.442 C15 VNZ 32 VNZ O2 O5 O 0 1 N N N N N N 171.682 168.081 150.723 8.948 -1.536 -0.587 O2 VNZ 33 VNZ C17 C27 C 0 1 N N N N N N 172.232 167.078 151.576 8.966 -2.796 -1.261 C17 VNZ 34 VNZ H1 H1 H 0 1 N N N N N N 167.989 169.516 153.528 -5.212 2.843 0.691 H1 VNZ 35 VNZ H2 H2 H 0 1 N N N N N N 169.626 170.231 153.724 -5.592 2.792 -1.043 H2 VNZ 36 VNZ H3 H3 H 0 1 N N N N N N 170.302 169.579 155.733 -6.064 1.129 1.969 H3 VNZ 37 VNZ H4 H4 H 0 1 N N N N N N 171.263 167.389 158.546 -7.441 -0.822 4.402 H4 VNZ 38 VNZ H5 H5 H 0 1 N N N N N N 169.793 167.206 157.531 -5.997 -0.029 3.728 H5 VNZ 39 VNZ H6 H6 H 0 1 N N N N N N 171.204 168.127 156.909 -7.620 0.522 3.248 H6 VNZ 40 VNZ H7 H7 H 0 1 N N N N N N 166.784 169.674 161.155 -7.459 -3.314 -1.722 H7 VNZ 41 VNZ H8 H8 H 0 1 N N N N N N 165.986 170.555 159.808 -5.844 -3.879 -1.230 H8 VNZ 42 VNZ H9 H9 H 0 1 N N N N N N 166.387 168.813 159.629 -7.296 -4.761 -0.698 H9 VNZ 43 VNZ H10 H10 H 0 1 N N N N N N 166.902 173.288 154.612 -2.957 0.822 -3.369 H10 VNZ 44 VNZ H11 H11 H 0 1 N N N N N N 165.267 172.948 153.949 -2.946 -0.347 -2.037 H11 VNZ 45 VNZ H12 H12 H 0 1 N N N N N N 165.397 171.978 156.117 -5.283 1.448 -2.755 H12 VNZ 46 VNZ H13 H13 H 0 1 N N N N N N 165.414 170.658 154.899 -5.115 -0.251 -3.240 H13 VNZ 47 VNZ H14 H14 H 0 1 N N N N N N 166.171 171.134 157.878 -5.928 -1.907 -1.912 H14 VNZ 48 VNZ H15 H15 H 0 1 N N N N N N 166.383 170.693 151.392 -1.181 1.831 -2.597 H15 VNZ 49 VNZ H16 H16 H 0 1 N N N N N N 165.751 172.374 151.341 -1.380 3.047 -1.313 H16 VNZ 50 VNZ H17 H17 H 0 1 N N N N N N 164.028 171.898 152.873 -1.039 1.290 0.403 H17 VNZ 51 VNZ H18 H18 H 0 1 N N N N N N 164.807 170.371 153.408 -0.840 0.074 -0.881 H18 VNZ 52 VNZ H19 H19 H 0 1 N N N N N N 163.865 170.630 150.577 1.116 1.320 -1.757 H19 VNZ 53 VNZ H20 H20 H 0 1 N N N N N N 162.666 170.380 151.891 0.917 2.536 -0.473 H20 VNZ 54 VNZ H22 H22 H 0 1 N N N N N N 163.616 168.681 153.638 0.176 0.763 1.756 H22 VNZ 55 VNZ H23 H23 H 0 1 N N N N N N 164.317 167.200 152.903 1.829 0.313 2.239 H23 VNZ 56 VNZ H24 H24 H 0 1 N N N N N N 165.351 168.645 153.172 1.459 1.995 1.790 H24 VNZ 57 VNZ H25 H25 H 0 1 N N N N N N 165.081 169.191 149.835 3.202 0.672 -1.131 H25 VNZ 58 VNZ H26 H26 H 0 1 N N N N N N 164.407 167.531 149.965 3.324 1.788 0.250 H26 VNZ 59 VNZ H27 H27 H 0 1 N N N N N N 166.188 167.601 152.104 3.417 -0.356 1.751 H27 VNZ 60 VNZ H28 H28 H 0 1 N N N N N N 166.456 166.533 149.187 3.582 -2.464 0.613 H28 VNZ 61 VNZ H29 H29 H 0 1 N N N N N N 166.652 165.627 150.726 3.386 -1.613 -0.984 H29 VNZ 62 VNZ H30 H30 H 0 1 N N N N N N 167.921 170.574 150.948 6.330 1.571 1.390 H30 VNZ 63 VNZ H31 H31 H 0 1 N N N N N N 172.024 171.377 152.269 9.566 2.600 1.545 H31 VNZ 64 VNZ H32 H32 H 0 1 N N N N N N 170.593 170.647 153.074 7.950 2.776 0.821 H32 VNZ 65 VNZ H33 H33 H 0 1 N N N N N N 171.901 169.593 152.439 8.140 1.942 2.383 H33 VNZ 66 VNZ H34 H34 H 0 1 N N N N N N 169.919 166.077 150.235 6.665 -2.750 -0.956 H34 VNZ 67 VNZ H35 H35 H 0 1 N N N N N N 173.330 167.139 151.554 8.365 -2.732 -2.168 H35 VNZ 68 VNZ H36 H36 H 0 1 N N N N N N 171.877 167.237 152.605 9.992 -3.053 -1.523 H36 VNZ 69 VNZ H37 H37 H 0 1 N N N N N N 171.913 166.085 151.227 8.555 -3.565 -0.606 H37 VNZ 70 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VNZ C13 C14 SING N N 1 VNZ C13 C12 SING N N 2 VNZ C15 C14 SING Y N 3 VNZ C15 C16 DOUB Y N 4 VNZ C14 C21 DOUB Y N 5 VNZ C11 C12 SING N N 6 VNZ C11 N1 SING N N 7 VNZ C16 O2 SING N N 8 VNZ C16 C18 SING Y N 9 VNZ C21 C20 SING Y N 10 VNZ C21 C12 SING N N 11 VNZ O2 C17 SING N N 12 VNZ C18 C20 DOUB Y N 13 VNZ C18 O3 SING N N 14 VNZ O3 C19 SING N N 15 VNZ N1 C9 SING N N 16 VNZ N1 C10 SING N N 17 VNZ C9 C8 SING N N 18 VNZ C7 C8 SING N N 19 VNZ C7 N SING N N 20 VNZ O1 C6 DOUB N N 21 VNZ C6 N SING N N 22 VNZ C6 C5 SING N N 23 VNZ N C22 SING N N 24 VNZ C5 C4 SING N N 25 VNZ C22 C23 SING N N 26 VNZ C23 C3 SING N N 27 VNZ C4 C3 DOUB Y N 28 VNZ C4 C24 SING Y N 29 VNZ C3 C2 SING Y N 30 VNZ C24 C25 DOUB Y N 31 VNZ C2 C1 DOUB Y N 32 VNZ C25 C1 SING Y N 33 VNZ C25 O4 SING N N 34 VNZ C26 O4 SING N N 35 VNZ C1 O SING N N 36 VNZ O C SING N N 37 VNZ C5 H1 SING N N 38 VNZ C5 H2 SING N N 39 VNZ C24 H3 SING N N 40 VNZ C26 H4 SING N N 41 VNZ C26 H5 SING N N 42 VNZ C26 H6 SING N N 43 VNZ C H7 SING N N 44 VNZ C H8 SING N N 45 VNZ C H9 SING N N 46 VNZ C22 H10 SING N N 47 VNZ C22 H11 SING N N 48 VNZ C23 H12 SING N N 49 VNZ C23 H13 SING N N 50 VNZ C2 H14 SING N N 51 VNZ C7 H15 SING N N 52 VNZ C7 H16 SING N N 53 VNZ C8 H17 SING N N 54 VNZ C8 H18 SING N N 55 VNZ C9 H19 SING N N 56 VNZ C9 H20 SING N N 57 VNZ C10 H22 SING N N 58 VNZ C10 H23 SING N N 59 VNZ C10 H24 SING N N 60 VNZ C11 H25 SING N N 61 VNZ C11 H26 SING N N 62 VNZ C12 H27 SING N N 63 VNZ C13 H28 SING N N 64 VNZ C13 H29 SING N N 65 VNZ C20 H30 SING N N 66 VNZ C19 H31 SING N N 67 VNZ C19 H32 SING N N 68 VNZ C19 H33 SING N N 69 VNZ C15 H34 SING N N 70 VNZ C17 H35 SING N N 71 VNZ C17 H36 SING N N 72 VNZ C17 H37 SING N N 73 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VNZ InChI InChI 1.06 "InChI=1S/C27H36N2O5/c1-28(17-21-11-20-14-25(33-4)26(34-5)16-22(20)21)8-6-9-29-10-7-18-12-23(31-2)24(32-3)13-19(18)15-27(29)30/h12-14,16,21H,6-11,15,17H2,1-5H3/t21-/m1/s1" VNZ InChIKey InChI 1.06 ACRHBAYQBXXRTO-OAQYLSRUSA-N VNZ SMILES_CANONICAL CACTVS 3.385 "COc1cc2CCN(CCCN(C)C[C@H]3Cc4cc(OC)c(OC)cc34)C(=O)Cc2cc1OC" VNZ SMILES CACTVS 3.385 "COc1cc2CCN(CCCN(C)C[CH]3Cc4cc(OC)c(OC)cc34)C(=O)Cc2cc1OC" VNZ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN(CCCN1CCc2cc(c(cc2CC1=O)OC)OC)C[C@H]3Cc4c3cc(c(c4)OC)OC" VNZ SMILES "OpenEye OEToolkits" 2.0.7 "CN(CCCN1CCc2cc(c(cc2CC1=O)OC)OC)CC3Cc4c3cc(c(c4)OC)OC" # _pdbx_chem_comp_identifier.comp_id VNZ _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "3-[3-[[(7~{S})-3,4-dimethoxy-7-bicyclo[4.2.0]octa-1(6),2,4-trienyl]methyl-methyl-amino]propyl]-7,8-dimethoxy-2,5-dihydro-1~{H}-3-benzazepin-4-one" # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 VNZ "3-[3-[[(7S)-3,4-dimethoxy-7-bicyclo[4.2.0]octa-1,3,5-trienyl]methyl-methyl-amino]propyl]-7,8-dimethoxy-2,5-dihydro-1H-3-benzazepin-4-one" PDB ? 2 VNZ "3-[3-[[(7S)-3,4-dimethoxy-7-bicyclo[4.2.0]octa-1(6),2,4-trienyl]methyl-methyl-amino]propyl]-7,8-dimethoxy-2,5-dihydro-1H-3-benzazepin-4-one" PDB ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VNZ "Create component" 2023-03-20 PDBE VNZ "Modify synonyms" 2023-05-11 PDBE VNZ "Initial release" 2024-08-14 RCSB #