data_VO0 # _chem_comp.id VO0 _chem_comp.name "(2~{R},3~{R},4~{S},5~{R})-2-(aminomethyl)-5-(hydroxymethyl)-1-methyl-pyrrolidine-3,4-diol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C7 H16 N2 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-08-01 _chem_comp.pdbx_modified_date 2024-04-05 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 176.214 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VO0 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8K7L _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VO0 CAA C1 C 0 1 N N R N N N 26.778 -18.320 -4.179 -1.182 -0.053 -0.503 CAA VO0 1 VO0 CAB C2 C 0 1 N N S N N N 27.765 -19.272 -3.557 -0.367 -1.370 -0.550 CAB VO0 2 VO0 CAC C3 C 0 1 N N R N N N 28.771 -18.334 -2.950 1.089 -0.840 -0.482 CAC VO0 3 VO0 CAD C4 C 0 1 N N R N N N 27.882 -17.248 -2.360 0.972 0.379 0.457 CAD VO0 4 VO0 CAF C5 C 0 1 N N N N N N 25.382 -18.940 -4.236 -2.591 -0.318 0.032 CAF VO0 5 VO0 CAJ C6 C 0 1 N N N N N N 28.628 -15.910 -2.211 1.882 1.505 -0.036 CAJ VO0 6 VO0 CAL C7 C 0 1 N N N N N N 26.930 -15.960 -4.221 -0.536 2.228 0.024 CAL VO0 7 VO0 NAE N1 N 0 1 N N N N N N 26.766 -17.124 -3.326 -0.434 0.820 0.427 NAE VO0 8 VO0 NAK N2 N 0 1 N N N N N N 29.641 -15.950 -1.146 3.283 1.071 0.037 NAK VO0 9 VO0 OAG O1 O 0 1 N N N N N N 27.113 -20.020 -2.518 -0.664 -2.197 0.577 OAG VO0 10 VO0 OAH O2 O 0 1 N N N N N N 29.513 -19.000 -1.935 1.960 -1.826 0.075 OAH VO0 11 VO0 OAI O3 O 0 1 N N N N N N 24.506 -18.062 -4.971 -3.361 0.884 -0.042 OAI VO0 12 VO0 H1 H1 H 0 1 N N N N N N 27.104 -18.059 -5.196 -1.229 0.400 -1.493 H1 VO0 13 VO0 H2 H2 H 0 1 N N N N N N 28.228 -19.921 -4.315 -0.545 -1.905 -1.483 H2 VO0 14 VO0 H3 H3 H 0 1 N N N N N N 29.426 -17.913 -3.727 1.434 -0.534 -1.470 H3 VO0 15 VO0 H4 H4 H 0 1 N N N N N N 27.504 -17.570 -1.378 1.253 0.093 1.471 H4 VO0 16 VO0 H5 H5 H 0 1 N N N N N N 24.997 -19.074 -3.215 -3.068 -1.092 -0.569 H5 VO0 17 VO0 H6 H6 H 0 1 N N N N N N 25.433 -19.916 -4.740 -2.530 -0.648 1.069 H6 VO0 18 VO0 H7 H7 H 0 1 N N N N N N 29.126 -15.675 -3.163 1.630 1.750 -1.069 H7 VO0 19 VO0 H8 H8 H 0 1 N N N N N N 27.897 -15.122 -1.975 1.741 2.386 0.590 H8 VO0 20 VO0 H9 H9 H 0 1 N N N N N N 26.927 -15.035 -3.625 -1.584 2.527 0.008 H9 VO0 21 VO0 H10 H10 H 0 1 N N N N N N 27.884 -16.045 -4.762 0.009 2.850 0.734 H10 VO0 22 VO0 H11 H11 H 0 1 N N N N N N 26.101 -15.933 -4.943 -0.107 2.353 -0.971 H11 VO0 23 VO0 H13 H13 H 0 1 N N N N N N 30.098 -15.062 -1.086 3.425 0.219 -0.484 H13 VO0 24 VO0 H14 H14 H 0 1 N N N N N N 29.199 -16.156 -0.273 3.905 1.799 -0.284 H14 VO0 25 VO0 H16 H16 H 0 1 N N N N N N 27.733 -20.622 -2.123 -0.178 -3.033 0.590 H16 VO0 26 VO0 H17 H17 H 0 1 N N N N N N 30.145 -18.399 -1.558 2.009 -2.644 -0.439 H17 VO0 27 VO0 H18 H18 H 0 1 N N N N N N 23.636 -18.442 -5.010 -4.268 0.790 0.281 H18 VO0 28 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VO0 OAI CAF SING N N 1 VO0 CAF CAA SING N N 2 VO0 CAL NAE SING N N 3 VO0 CAA CAB SING N N 4 VO0 CAA NAE SING N N 5 VO0 CAB CAC SING N N 6 VO0 CAB OAG SING N N 7 VO0 NAE CAD SING N N 8 VO0 CAC CAD SING N N 9 VO0 CAC OAH SING N N 10 VO0 CAD CAJ SING N N 11 VO0 CAJ NAK SING N N 12 VO0 CAA H1 SING N N 13 VO0 CAB H2 SING N N 14 VO0 CAC H3 SING N N 15 VO0 CAD H4 SING N N 16 VO0 CAF H5 SING N N 17 VO0 CAF H6 SING N N 18 VO0 CAJ H7 SING N N 19 VO0 CAJ H8 SING N N 20 VO0 CAL H9 SING N N 21 VO0 CAL H10 SING N N 22 VO0 CAL H11 SING N N 23 VO0 NAK H13 SING N N 24 VO0 NAK H14 SING N N 25 VO0 OAG H16 SING N N 26 VO0 OAH H17 SING N N 27 VO0 OAI H18 SING N N 28 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VO0 InChI InChI 1.06 "InChI=1S/C7H16N2O3/c1-9-4(2-8)6(11)7(12)5(9)3-10/h4-7,10-12H,2-3,8H2,1H3/t4-,5-,6-,7+/m1/s1" VO0 InChIKey InChI 1.06 NUCGMCIENZGSKH-GBNDHIKLSA-N VO0 SMILES_CANONICAL CACTVS 3.385 "CN1[C@H](CN)[C@@H](O)[C@@H](O)[C@H]1CO" VO0 SMILES CACTVS 3.385 "CN1[CH](CN)[CH](O)[CH](O)[CH]1CO" VO0 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN1[C@@H]([C@H]([C@H]([C@H]1CO)O)O)CN" VO0 SMILES "OpenEye OEToolkits" 2.0.7 "CN1C(C(C(C1CO)O)O)CN" # _pdbx_chem_comp_identifier.comp_id VO0 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{R},3~{R},4~{S},5~{R})-2-(aminomethyl)-5-(hydroxymethyl)-1-methyl-pyrrolidine-3,4-diol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VO0 "Create component" 2023-08-01 PDBJ VO0 "Initial release" 2024-04-10 RCSB #