data_VON # _chem_comp.id VON _chem_comp.name "(3~{S},4~{S},5~{S},6~{R})-4,5,6-tris(oxidanyl)piperidine-3-carboxylic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C6 H11 N O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-03-21 _chem_comp.pdbx_modified_date 2024-01-05 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 177.155 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VON _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8OHW _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VON O11 O1 O 0 1 N N N N N N -31.467 6.545 -13.227 -2.659 -1.114 0.180 O11 VON 1 VON N1 N1 N 0 1 N N N N N N -28.694 7.497 -9.411 0.979 1.739 0.107 N1 VON 2 VON C2 C1 C 0 1 N N R N N N -28.948 6.285 -8.582 1.837 0.567 0.324 C2 VON 3 VON C3 C2 C 0 1 N N S N N N -29.294 5.116 -9.517 1.400 -0.566 -0.608 C3 VON 4 VON C4 C3 C 0 1 N N S N N N -30.397 5.467 -10.535 -0.062 -0.921 -0.322 C4 VON 5 VON C5 C4 C 0 1 N N S N N N -30.135 6.758 -11.268 -0.927 0.328 -0.509 C5 VON 6 VON C6 C5 C 0 1 N N N N N N -31.301 7.187 -12.150 -2.360 0.003 -0.173 C6 VON 7 VON C7 C6 C 0 1 N N N N N N -29.836 7.897 -10.309 -0.424 1.436 0.420 C7 VON 8 VON O8 O2 O 0 1 N N N N N N -27.794 6.037 -7.808 3.195 0.914 0.048 O8 VON 9 VON O9 O3 O 0 1 N N N N N N -29.652 3.983 -8.720 2.222 -1.713 -0.382 O9 VON 10 VON O10 O4 O 0 1 N N N N N N -31.642 5.680 -9.800 -0.185 -1.391 1.021 O10 VON 11 VON O12 O5 O 0 1 N N N N N N -32.008 8.147 -11.779 -3.304 0.952 -0.265 O12 VON 12 VON H1 H1 H 0 1 N N N N N N -27.894 7.320 -9.985 1.072 2.085 -0.836 H1 VON 13 VON H3 H3 H 0 1 N N N N N N -29.811 6.473 -7.926 1.748 0.240 1.360 H3 VON 14 VON H4 H4 H 0 1 N N N N N N -28.386 4.873 -10.089 1.502 -0.244 -1.644 H4 VON 15 VON H5 H5 H 0 1 N N N N N N -30.508 4.643 -11.255 -0.389 -1.698 -1.012 H5 VON 16 VON H6 H6 H 0 1 N N N N N N -29.255 6.615 -11.913 -0.863 0.664 -1.544 H6 VON 17 VON H7 H7 H 0 1 N N N N N N -29.559 8.796 -10.879 -0.501 1.104 1.455 H7 VON 18 VON H8 H8 H 0 1 N N N N N N -30.727 8.109 -9.700 -1.029 2.331 0.279 H8 VON 19 VON H9 H9 H 0 1 N N N N N N -27.621 6.785 -7.248 3.539 1.627 0.603 H9 VON 20 VON H10 H10 H 0 1 N N N N N N -28.953 3.794 -8.105 3.164 -1.559 -0.540 H10 VON 21 VON H11 H11 H 0 1 N N N N N N -31.862 4.894 -9.314 0.341 -2.179 1.212 H11 VON 22 VON H12 H12 H 0 1 N N N N N N -32.681 8.314 -12.428 -4.208 0.696 -0.039 H12 VON 23 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VON O11 C6 DOUB N N 1 VON C6 O12 SING N N 2 VON C6 C5 SING N N 3 VON C5 C4 SING N N 4 VON C5 C7 SING N N 5 VON C4 O10 SING N N 6 VON C4 C3 SING N N 7 VON C7 N1 SING N N 8 VON C3 O9 SING N N 9 VON C3 C2 SING N N 10 VON N1 C2 SING N N 11 VON C2 O8 SING N N 12 VON N1 H1 SING N N 13 VON C2 H3 SING N N 14 VON C3 H4 SING N N 15 VON C4 H5 SING N N 16 VON C5 H6 SING N N 17 VON C7 H7 SING N N 18 VON C7 H8 SING N N 19 VON O8 H9 SING N N 20 VON O9 H10 SING N N 21 VON O10 H11 SING N N 22 VON O12 H12 SING N N 23 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VON InChI InChI 1.06 "InChI=1S/C6H11NO5/c8-3-2(6(11)12)1-7-5(10)4(3)9/h2-5,7-10H,1H2,(H,11,12)/t2-,3-,4-,5+/m0/s1" VON InChIKey InChI 1.06 ZIPHSWANMLXHEB-NEEWWZBLSA-N VON SMILES_CANONICAL CACTVS 3.385 "O[C@H]1NC[C@@H]([C@H](O)[C@@H]1O)C(O)=O" VON SMILES CACTVS 3.385 "O[CH]1NC[CH]([CH](O)[CH]1O)C(O)=O" VON SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C1[C@@H]([C@@H]([C@@H]([C@H](N1)O)O)O)C(=O)O" VON SMILES "OpenEye OEToolkits" 2.0.7 "C1C(C(C(C(N1)O)O)O)C(=O)O" # _pdbx_chem_comp_identifier.comp_id VON _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(3~{S},4~{S},5~{S},6~{R})-4,5,6-tris(oxidanyl)piperidine-3-carboxylic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VON "Create component" 2023-03-21 PDBE VON "Initial release" 2024-01-10 RCSB #