data_VOT # _chem_comp.id VOT _chem_comp.name "(2~{S},3~{R})-2-[2-[4-[2-(4-ethylphenyl)hydrazinyl]phenyl]ethanoylamino]-~{N}-[(5~{S},8~{S},10~{S})-5-methyl-10-oxidanyl-2,7-bis(oxidanylidene)-1,6-diazacyclododec-8-yl]-3-oxidanyl-butanamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C31 H44 N6 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-03-22 _chem_comp.pdbx_modified_date 2023-12-22 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 596.718 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VOT _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8OHZ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VOT C10 C1 C 0 1 Y N N N N N 57.056 -133.901 34.889 -4.108 1.418 1.032 C10 VOT 1 VOT C13 C2 C 0 1 Y N N N N N 55.048 -134.902 33.309 -5.011 -1.155 1.514 C13 VOT 2 VOT C17 C3 C 0 1 Y N N N N N 51.064 -132.613 34.744 -10.216 0.995 -0.778 C17 VOT 3 VOT C20 C4 C 0 1 N N N N N N 47.804 -131.343 33.655 -13.376 -1.020 -1.222 C20 VOT 4 VOT C21 C5 C 0 1 N N N N N N 47.192 -131.627 35.024 -14.290 -0.766 -0.022 C21 VOT 5 VOT C22 C6 C 0 1 Y N N N N N 49.688 -132.122 32.401 -11.114 -1.584 -0.314 C22 VOT 6 VOT C24 C7 C 0 1 Y N N N N N 56.366 -135.210 33.032 -3.713 -0.808 1.829 C24 VOT 7 VOT C26 C8 C 0 1 N N S N N N 61.610 -135.011 35.826 1.225 0.577 -0.362 C26 VOT 8 VOT C36 C9 C 0 1 N N N N N N 63.115 -137.092 43.466 8.697 1.924 0.749 C36 VOT 9 VOT C34 C10 C 0 1 N N S N N N 63.296 -136.221 42.257 7.294 2.191 0.201 C34 VOT 10 VOT C35 C11 C 0 1 N N N N N N 63.514 -134.816 42.750 6.756 3.503 0.777 C35 VOT 11 VOT N33 N1 N 0 1 N N N N N N 62.125 -136.197 41.403 6.412 1.064 0.609 N33 VOT 12 VOT C31 C12 C 0 1 N N N N N N 62.281 -136.476 40.075 5.761 0.473 -0.449 C31 VOT 13 VOT O32 O1 O 0 1 N N N N N N 63.406 -136.709 39.665 5.931 0.867 -1.583 O32 VOT 14 VOT C37 C13 C 0 1 N N N N N N 62.694 -138.428 43.065 9.438 0.968 -0.188 C37 VOT 15 VOT C38 C14 C 0 1 N N N N N N 61.358 -138.583 43.122 8.998 -0.447 0.089 C38 VOT 16 VOT O39 O2 O 0 1 N N N N N N 60.730 -138.345 44.131 8.248 -0.693 1.009 O39 VOT 17 VOT N40 N2 N 0 1 N N N N N N 60.750 -139.108 42.018 9.462 -1.448 -0.718 N40 VOT 18 VOT C41 C15 C 0 1 N N N N N N 59.313 -139.307 41.960 8.982 -2.807 -0.379 C41 VOT 19 VOT C42 C16 C 0 1 N N N N N N 58.850 -139.057 40.571 7.604 -3.011 -1.013 C42 VOT 20 VOT C43 C17 C 0 1 N N S N N N 59.244 -137.715 40.144 6.522 -2.517 -0.051 C43 VOT 21 VOT O44 O3 O 0 1 N N N N N N 58.195 -137.233 39.399 6.060 -3.609 0.747 O44 VOT 22 VOT C45 C18 C 0 1 N N N N N N 60.454 -137.789 39.276 5.353 -1.940 -0.852 C45 VOT 23 VOT C30 C19 C 0 1 N N S N N N 61.164 -136.459 39.255 4.834 -0.679 -0.159 C30 VOT 24 VOT N29 N3 N 0 1 N N N N N N 61.565 -136.113 37.897 3.493 -0.363 -0.659 N29 VOT 25 VOT C27 C20 C 0 1 N N N N N N 60.988 -135.178 37.173 2.640 0.349 0.103 C27 VOT 26 VOT O28 O4 O 0 1 N N N N N N 60.002 -134.569 37.508 3.010 0.805 1.164 O28 VOT 27 VOT C46 C21 C 0 1 N N R N N N 62.582 -133.894 35.847 1.187 1.779 -1.308 C46 VOT 28 VOT C48 C22 C 0 1 N N N N N N 63.712 -134.229 36.775 1.957 1.447 -2.587 C48 VOT 29 VOT O47 O5 O 0 1 N N N N N N 63.119 -133.839 34.567 -0.170 2.085 -1.635 O47 VOT 30 VOT N25 N4 N 0 1 N N N N N N 60.648 -134.791 34.764 0.366 0.839 0.795 N25 VOT 31 VOT C1 C23 C 0 1 N N N N N N 59.422 -135.268 34.756 -0.955 0.579 0.727 C1 VOT 32 VOT O2 O6 O 0 1 N N N N N N 58.883 -135.893 35.638 -1.433 0.129 -0.293 O2 VOT 33 VOT C3 C24 C 0 1 N N N N N N 58.666 -134.998 33.526 -1.838 0.848 1.918 C3 VOT 34 VOT C9 C25 C 0 1 Y N N N N N 57.370 -134.711 33.827 -3.260 0.476 1.584 C9 VOT 35 VOT C11 C26 C 0 1 Y N N N N N 55.738 -133.593 35.170 -5.411 1.080 0.724 C11 VOT 36 VOT C12 C27 C 0 1 Y N N N N N 54.732 -134.108 34.390 -5.868 -0.210 0.965 C12 VOT 37 VOT N14 N5 N 0 1 N N N N N N 53.474 -133.789 34.613 -7.182 -0.558 0.645 N14 VOT 38 VOT N15 N6 N 0 1 N N N N N N 52.879 -133.354 33.486 -8.045 0.397 0.091 N15 VOT 39 VOT C16 C28 C 0 1 Y N N N N N 51.656 -132.891 33.532 -9.359 0.049 -0.229 C16 VOT 40 VOT C23 C29 C 0 1 Y N N N N N 50.976 -132.638 32.360 -9.813 -1.243 0.003 C23 VOT 41 VOT C19 C30 C 0 1 Y N N N N N 49.086 -131.848 33.612 -11.962 -0.641 -0.866 C19 VOT 42 VOT C18 C31 C 0 1 Y N N N N N 49.775 -132.099 34.784 -11.515 0.647 -1.092 C18 VOT 43 VOT H1 H1 H 0 1 N N N N N N 57.844 -133.501 35.510 -3.753 2.421 0.845 H1 VOT 44 VOT H2 H2 H 0 1 N N N N N N 54.262 -135.285 32.675 -5.361 -2.161 1.695 H2 VOT 45 VOT H3 H3 H 0 1 N N N N N N 51.602 -132.795 35.663 -9.868 2.002 -0.955 H3 VOT 46 VOT H4 H4 H 0 1 N N N N N N 47.832 -130.257 33.484 -13.413 -2.076 -1.490 H4 VOT 47 VOT H5 H5 H 0 1 N N N N N N 47.195 -131.822 32.874 -13.711 -0.419 -2.068 H5 VOT 48 VOT H6 H6 H 0 1 N N N N N N 46.169 -131.224 35.060 -13.955 -1.367 0.824 H6 VOT 49 VOT H7 H7 H 0 1 N N N N N N 47.165 -132.713 35.195 -14.253 0.290 0.246 H7 VOT 50 VOT H8 H8 H 0 1 N N N N N N 47.802 -131.148 35.804 -15.313 -1.040 -0.279 H8 VOT 51 VOT H9 H9 H 0 1 N N N N N N 49.155 -131.934 31.481 -11.466 -2.589 -0.139 H9 VOT 52 VOT H10 H10 H 0 1 N N N N N N 56.607 -135.843 32.191 -3.046 -1.542 2.256 H10 VOT 53 VOT H11 H11 H 0 1 N N N N N N 62.165 -135.934 35.600 0.867 -0.309 -0.887 H11 VOT 54 VOT H12 H12 H 0 1 N N N N N N 64.068 -137.160 44.011 9.246 2.864 0.817 H12 VOT 55 VOT H13 H13 H 0 1 N N N N N N 62.349 -136.651 44.120 8.621 1.476 1.740 H13 VOT 56 VOT H14 H14 H 0 1 N N N N N N 64.177 -136.554 41.689 7.331 2.255 -0.887 H14 VOT 57 VOT H15 H15 H 0 1 N N N N N N 64.397 -134.790 43.405 7.417 4.322 0.493 H15 VOT 58 VOT H16 H16 H 0 1 N N N N N N 63.674 -134.147 41.892 5.757 3.689 0.384 H16 VOT 59 VOT H17 H17 H 0 1 N N N N N N 62.630 -134.484 43.314 6.711 3.431 1.863 H17 VOT 60 VOT H18 H18 H 0 1 N N N N N N 61.223 -135.981 41.778 6.306 0.775 1.529 H18 VOT 61 VOT H19 H19 H 0 1 N N N N N N 63.164 -139.163 43.735 9.209 1.224 -1.222 H19 VOT 62 VOT H20 H20 H 0 1 N N N N N N 63.027 -138.608 42.032 10.511 1.054 -0.021 H20 VOT 63 VOT H21 H21 H 0 1 N N N N N N 61.309 -139.362 41.229 10.063 -1.280 -1.461 H21 VOT 64 VOT H22 H22 H 0 1 N N N N N N 58.815 -138.607 42.647 9.678 -3.549 -0.770 H22 VOT 65 VOT H23 H23 H 0 1 N N N N N N 59.071 -140.340 42.250 8.908 -2.909 0.704 H23 VOT 66 VOT H24 H24 H 0 1 N N N N N N 57.754 -139.144 40.531 7.547 -2.449 -1.945 H24 VOT 67 VOT H25 H25 H 0 1 N N N N N N 59.302 -139.800 39.898 7.452 -4.071 -1.218 H25 VOT 68 VOT H26 H26 H 0 1 N N N N N N 59.448 -137.080 41.019 6.936 -1.744 0.596 H26 VOT 69 VOT H27 H27 H 0 1 N N N N N N 57.417 -137.181 39.942 6.750 -4.024 1.283 H27 VOT 70 VOT H28 H28 H 0 1 N N N N N N 60.151 -138.055 38.253 5.690 -1.689 -1.858 H28 VOT 71 VOT H29 H29 H 0 1 N N N N N N 61.136 -138.558 39.668 4.553 -2.678 -0.910 H29 VOT 72 VOT H30 H30 H 0 1 N N N N N N 60.458 -135.696 39.614 4.789 -0.848 0.917 H30 VOT 73 VOT H31 H31 H 0 1 N N N N N N 62.326 -136.618 37.490 3.220 -0.667 -1.539 H31 VOT 74 VOT H32 H32 H 0 1 N N N N N N 62.098 -132.952 36.143 1.646 2.639 -0.820 H32 VOT 75 VOT H33 H33 H 0 1 N N N N N N 63.335 -134.284 37.807 1.576 0.517 -3.009 H33 VOT 76 VOT H34 H34 H 0 1 N N N N N N 64.145 -135.199 36.490 1.828 2.254 -3.309 H34 VOT 77 VOT H35 H35 H 0 1 N N N N N N 64.485 -133.449 36.708 3.016 1.333 -2.354 H35 VOT 78 VOT H36 H36 H 0 1 N N N N N N 63.755 -133.135 34.520 -0.719 2.306 -0.869 H36 VOT 79 VOT H37 H37 H 0 1 N N N N N N 60.937 -134.238 33.983 0.748 1.198 1.611 H37 VOT 80 VOT H38 H38 H 0 1 N N N N N N 58.701 -135.884 32.876 -1.497 0.254 2.766 H38 VOT 81 VOT H39 H39 H 0 1 N N N N N N 59.116 -134.142 33.003 -1.791 1.907 2.174 H39 VOT 82 VOT H40 H40 H 0 1 N N N N N N 55.500 -132.948 36.003 -6.075 1.818 0.297 H40 VOT 83 VOT H41 H41 H 0 1 N N N N N N 53.437 -133.065 35.302 -7.498 -1.460 0.807 H41 VOT 84 VOT H42 H42 H 0 1 N N N N N N 52.873 -134.123 32.847 -7.729 1.300 -0.071 H42 VOT 85 VOT H43 H43 H 0 1 N N N N N N 51.446 -132.841 31.409 -9.150 -1.980 0.430 H43 VOT 86 VOT H44 H44 H 0 1 N N N N N N 49.308 -131.894 35.736 -12.183 1.383 -1.515 H44 VOT 87 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VOT C23 C22 DOUB Y N 1 VOT C23 C16 SING Y N 2 VOT C22 C19 SING Y N 3 VOT C24 C13 DOUB Y N 4 VOT C24 C9 SING Y N 5 VOT C13 C12 SING Y N 6 VOT N15 C16 SING N N 7 VOT N15 N14 SING N N 8 VOT C3 C9 SING N N 9 VOT C3 C1 SING N N 10 VOT C16 C17 DOUB Y N 11 VOT C19 C20 SING N N 12 VOT C19 C18 DOUB Y N 13 VOT C20 C21 SING N N 14 VOT C9 C10 DOUB Y N 15 VOT C12 N14 SING N N 16 VOT C12 C11 DOUB Y N 17 VOT O47 C46 SING N N 18 VOT C17 C18 SING Y N 19 VOT C1 N25 SING N N 20 VOT C1 O2 DOUB N N 21 VOT N25 C26 SING N N 22 VOT C10 C11 SING Y N 23 VOT C26 C46 SING N N 24 VOT C26 C27 SING N N 25 VOT C46 C48 SING N N 26 VOT C27 O28 DOUB N N 27 VOT C27 N29 SING N N 28 VOT N29 C30 SING N N 29 VOT C30 C45 SING N N 30 VOT C30 C31 SING N N 31 VOT C45 C43 SING N N 32 VOT O44 C43 SING N N 33 VOT O32 C31 DOUB N N 34 VOT C31 N33 SING N N 35 VOT C43 C42 SING N N 36 VOT C42 C41 SING N N 37 VOT N33 C34 SING N N 38 VOT C41 N40 SING N N 39 VOT N40 C38 SING N N 40 VOT C34 C35 SING N N 41 VOT C34 C36 SING N N 42 VOT C37 C38 SING N N 43 VOT C37 C36 SING N N 44 VOT C38 O39 DOUB N N 45 VOT C10 H1 SING N N 46 VOT C13 H2 SING N N 47 VOT C17 H3 SING N N 48 VOT C20 H4 SING N N 49 VOT C20 H5 SING N N 50 VOT C21 H6 SING N N 51 VOT C21 H7 SING N N 52 VOT C21 H8 SING N N 53 VOT C22 H9 SING N N 54 VOT C24 H10 SING N N 55 VOT C26 H11 SING N N 56 VOT C36 H12 SING N N 57 VOT C36 H13 SING N N 58 VOT C34 H14 SING N N 59 VOT C35 H15 SING N N 60 VOT C35 H16 SING N N 61 VOT C35 H17 SING N N 62 VOT N33 H18 SING N N 63 VOT C37 H19 SING N N 64 VOT C37 H20 SING N N 65 VOT N40 H21 SING N N 66 VOT C41 H22 SING N N 67 VOT C41 H23 SING N N 68 VOT C42 H24 SING N N 69 VOT C42 H25 SING N N 70 VOT C43 H26 SING N N 71 VOT O44 H27 SING N N 72 VOT C45 H28 SING N N 73 VOT C45 H29 SING N N 74 VOT C30 H30 SING N N 75 VOT N29 H31 SING N N 76 VOT C46 H32 SING N N 77 VOT C48 H33 SING N N 78 VOT C48 H34 SING N N 79 VOT C48 H35 SING N N 80 VOT O47 H36 SING N N 81 VOT N25 H37 SING N N 82 VOT C3 H38 SING N N 83 VOT C3 H39 SING N N 84 VOT C11 H40 SING N N 85 VOT N14 H41 SING N N 86 VOT N15 H42 SING N N 87 VOT C23 H43 SING N N 88 VOT C18 H44 SING N N 89 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VOT InChI InChI 1.06 "InChI=1S/C31H44N6O6/c1-4-21-6-10-23(11-7-21)36-37-24-12-8-22(9-13-24)17-28(41)35-29(20(3)38)31(43)34-26-18-25(39)15-16-32-27(40)14-5-19(2)33-30(26)42/h6-13,19-20,25-26,29,36-39H,4-5,14-18H2,1-3H3,(H,32,40)(H,33,42)(H,34,43)(H,35,41)/t19-,20+,25-,26-,29-/m0/s1" VOT InChIKey InChI 1.06 RFGUMPPDEDFOAF-HXNWBPOKSA-N VOT SMILES_CANONICAL CACTVS 3.385 "CCc1ccc(NNc2ccc(CC(=O)N[C@@H]([C@@H](C)O)C(=O)N[C@H]3C[C@@H](O)CCNC(=O)CC[C@H](C)NC3=O)cc2)cc1" VOT SMILES CACTVS 3.385 "CCc1ccc(NNc2ccc(CC(=O)N[CH]([CH](C)O)C(=O)N[CH]3C[CH](O)CCNC(=O)CC[CH](C)NC3=O)cc2)cc1" VOT SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCc1ccc(cc1)NNc2ccc(cc2)CC(=O)N[C@@H]([C@@H](C)O)C(=O)N[C@H]3C[C@H](CCNC(=O)CC[C@@H](NC3=O)C)O" VOT SMILES "OpenEye OEToolkits" 2.0.7 "CCc1ccc(cc1)NNc2ccc(cc2)CC(=O)NC(C(C)O)C(=O)NC3CC(CCNC(=O)CCC(NC3=O)C)O" # _pdbx_chem_comp_identifier.comp_id VOT _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{S},3~{R})-2-[2-[4-[2-(4-ethylphenyl)hydrazinyl]phenyl]ethanoylamino]-~{N}-[(5~{S},8~{S},10~{S})-5-methyl-10-oxidanyl-2,7-bis(oxidanylidene)-1,6-diazacyclododec-8-yl]-3-oxidanyl-butanamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VOT "Create component" 2023-03-22 PDBE VOT "Initial release" 2023-12-27 RCSB #