data_VP4 # _chem_comp.id VP4 _chem_comp.name "N-[4-chloro-3-(dimethylamino)phenyl]-N~2~-[3-(hydroxymethyl)quinolin-6-yl]-L-alaninamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H23 Cl N4 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-08-31 _chem_comp.pdbx_modified_date 2025-01-10 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 398.886 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VP4 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7JYJ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VP4 C14 C1 C 0 1 N N N N N N 11.848 44.633 52.956 -6.997 -2.064 -0.566 C14 VP4 1 VP4 C6 C2 C 0 1 Y N N N N N 14.715 41.510 52.026 -3.357 -0.236 0.495 C6 VP4 2 VP4 C11 C3 C 0 1 Y N N N N N 13.975 42.504 52.681 -4.360 -0.850 -0.241 C11 VP4 3 VP4 C7 C4 C 0 1 Y N N N N N 14.086 40.317 51.675 -3.557 1.036 1.015 C7 VP4 4 VP4 C8 C5 C 0 1 Y N N N N N 12.735 40.123 51.917 -4.755 1.691 0.802 C8 VP4 5 VP4 C9 C6 C 0 1 Y N N N N N 11.993 41.112 52.545 -5.758 1.083 0.069 C9 VP4 6 VP4 C10 C7 C 0 1 Y N N N N N 12.600 42.321 52.934 -5.563 -0.190 -0.454 C10 VP4 7 VP4 C13 C8 C 0 1 N N N N N N 12.032 43.367 55.045 -6.153 -1.026 -2.584 C13 VP4 8 VP4 C3 C9 C 0 1 N N N N N N 16.920 42.665 51.734 -0.992 -0.204 0.758 C3 VP4 9 VP4 CL15 CL1 CL 0 0 N N N N N N 10.305 40.798 52.825 -7.261 1.909 -0.197 CL15 VP4 10 VP4 C1 C10 C 0 1 N N N N N N 19.117 41.874 52.652 0.329 -1.734 2.195 C1 VP4 11 VP4 C2 C11 C 0 1 N N S N N N 18.383 42.402 51.415 0.322 -0.929 0.893 C2 VP4 12 VP4 O4 O1 O 0 1 N N N N N N 16.521 43.792 51.973 -1.012 1.006 0.687 O4 VP4 13 VP4 N5 N1 N 0 1 N N N N N N 16.096 41.587 51.750 -2.145 -0.901 0.717 N5 VP4 14 VP4 N12 N2 N 0 1 N N N N N N 11.823 43.302 53.585 -6.576 -0.805 -1.195 N12 VP4 15 VP4 N16 N3 N 0 1 N N N N N N 19.108 43.581 50.894 1.417 0.044 0.914 N16 VP4 16 VP4 C17 C12 C 0 1 Y N N N N N 18.736 44.360 49.780 2.699 -0.339 0.514 C17 VP4 17 VP4 C18 C13 C 0 1 Y N N N N N 19.094 45.729 49.765 2.931 -1.654 0.093 C18 VP4 18 VP4 C19 C14 C 0 1 Y N N N N N 18.776 46.552 48.717 4.168 -2.054 -0.302 C19 VP4 19 VP4 C20 C15 C 0 1 Y N N N N N 18.053 46.027 47.618 5.239 -1.142 -0.293 C20 VP4 20 VP4 C21 C16 C 0 1 Y N N N N N 17.693 44.639 47.617 5.010 0.191 0.132 C21 VP4 21 VP4 C22 C17 C 0 1 Y N N N N N 18.066 43.807 48.696 3.723 0.583 0.531 C22 VP4 22 VP4 C23 C18 C 0 1 Y N N N N N 16.966 44.130 46.517 6.086 1.099 0.139 C23 VP4 23 VP4 C24 C19 C 0 1 Y N N N N N 16.631 44.985 45.494 7.311 0.651 -0.267 C24 VP4 24 VP4 C25 C20 C 0 1 Y N N N N N 17.017 46.331 45.549 7.467 -0.672 -0.673 C25 VP4 25 VP4 N26 N4 N 0 1 Y N N N N N 17.709 46.803 46.570 6.463 -1.516 -0.678 N26 VP4 26 VP4 C27 C21 C 0 1 N N N N N N 15.848 44.466 44.317 8.491 1.587 -0.277 C27 VP4 27 VP4 O28 O2 O 0 1 N N N N N N 16.567 43.381 43.737 8.574 2.237 -1.547 O28 VP4 28 VP4 H1 H1 H 0 1 N N N N N N 11.216 45.324 53.533 -7.372 -1.862 0.437 H1 VP4 29 VP4 H2 H2 H 0 1 N N N N N N 12.881 45.010 52.937 -7.787 -2.522 -1.163 H2 VP4 30 VP4 H3 H3 H 0 1 N N N N N N 11.466 44.559 51.927 -6.147 -2.743 -0.507 H3 VP4 31 VP4 H4 H4 H 0 1 N N N N N N 14.461 43.416 52.994 -4.206 -1.839 -0.646 H4 VP4 32 VP4 H5 H5 H 0 1 N N N N N N 14.660 39.531 51.207 -2.776 1.514 1.589 H5 VP4 33 VP4 H6 H6 H 0 1 N N N N N N 12.260 39.201 51.616 -4.908 2.680 1.207 H6 VP4 34 VP4 H7 H7 H 0 1 N N N N N N 11.392 44.153 55.473 -6.983 -1.440 -3.155 H7 VP4 35 VP4 H8 H8 H 0 1 N N N N N N 11.773 42.398 55.496 -5.846 -0.077 -3.025 H8 VP4 36 VP4 H9 H9 H 0 1 N N N N N N 13.087 43.599 55.254 -5.315 -1.723 -2.602 H9 VP4 37 VP4 H10 H10 H 0 1 N N N N N N 18.585 40.996 53.048 1.280 -2.258 2.292 H10 VP4 38 VP4 H11 H11 H 0 1 N N N N N N 20.142 41.588 52.375 0.199 -1.058 3.040 H11 VP4 39 VP4 H12 H12 H 0 1 N N N N N N 19.151 42.660 53.421 -0.485 -2.458 2.179 H12 VP4 40 VP4 H13 H13 H 0 1 N N N N N N 18.419 41.613 50.649 0.452 -1.605 0.048 H13 VP4 41 VP4 H14 H14 H 0 1 N N N N N N 16.534 40.715 51.533 -2.135 -1.863 0.841 H14 VP4 42 VP4 H15 H15 H 0 1 N N N N N N 20.029 43.251 50.687 1.251 0.954 1.207 H15 VP4 43 VP4 H16 H16 H 0 1 N N N N N N 19.635 46.138 50.606 2.115 -2.361 0.083 H16 VP4 44 VP4 H17 H17 H 0 1 N N N N N N 19.073 47.590 48.729 4.329 -3.073 -0.623 H17 VP4 45 VP4 H18 H18 H 0 1 N N N N N N 17.833 42.753 48.678 3.538 1.596 0.856 H18 VP4 46 VP4 H19 H19 H 0 1 N N N N N N 16.679 43.089 46.481 5.946 2.122 0.456 H19 VP4 47 VP4 H20 H20 H 0 1 N N N N N N 16.744 46.994 44.742 8.441 -1.013 -0.991 H20 VP4 48 VP4 H21 H21 H 0 1 N N N N N N 15.722 45.267 43.573 8.369 2.335 0.507 H21 VP4 49 VP4 H22 H22 H 0 1 N N N N N N 14.860 44.119 44.653 9.406 1.021 -0.099 H22 VP4 50 VP4 H23 H23 H 0 1 N N N N N N 16.084 43.043 42.992 9.312 2.856 -1.625 H23 VP4 51 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VP4 O28 C27 SING N N 1 VP4 C27 C24 SING N N 2 VP4 C24 C25 DOUB Y N 3 VP4 C24 C23 SING Y N 4 VP4 C25 N26 SING Y N 5 VP4 C23 C21 DOUB Y N 6 VP4 N26 C20 DOUB Y N 7 VP4 C21 C20 SING Y N 8 VP4 C21 C22 SING Y N 9 VP4 C20 C19 SING Y N 10 VP4 C22 C17 DOUB Y N 11 VP4 C19 C18 DOUB Y N 12 VP4 C18 C17 SING Y N 13 VP4 C17 N16 SING N N 14 VP4 N16 C2 SING N N 15 VP4 C2 C3 SING N N 16 VP4 C2 C1 SING N N 17 VP4 C7 C8 DOUB Y N 18 VP4 C7 C6 SING Y N 19 VP4 C3 N5 SING N N 20 VP4 C3 O4 DOUB N N 21 VP4 N5 C6 SING N N 22 VP4 C8 C9 SING Y N 23 VP4 C6 C11 DOUB Y N 24 VP4 C9 CL15 SING N N 25 VP4 C9 C10 DOUB Y N 26 VP4 C11 C10 SING Y N 27 VP4 C10 N12 SING N N 28 VP4 C14 N12 SING N N 29 VP4 N12 C13 SING N N 30 VP4 C14 H1 SING N N 31 VP4 C14 H2 SING N N 32 VP4 C14 H3 SING N N 33 VP4 C11 H4 SING N N 34 VP4 C7 H5 SING N N 35 VP4 C8 H6 SING N N 36 VP4 C13 H7 SING N N 37 VP4 C13 H8 SING N N 38 VP4 C13 H9 SING N N 39 VP4 C1 H10 SING N N 40 VP4 C1 H11 SING N N 41 VP4 C1 H12 SING N N 42 VP4 C2 H13 SING N N 43 VP4 N5 H14 SING N N 44 VP4 N16 H15 SING N N 45 VP4 C18 H16 SING N N 46 VP4 C19 H17 SING N N 47 VP4 C22 H18 SING N N 48 VP4 C23 H19 SING N N 49 VP4 C25 H20 SING N N 50 VP4 C27 H21 SING N N 51 VP4 C27 H22 SING N N 52 VP4 O28 H23 SING N N 53 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VP4 SMILES ACDLabs 12.01 "CN(c1cc(ccc1Cl)NC(=O)C(C)Nc2ccc3c(c2)cc(cn3)CO)C" VP4 InChI InChI 1.03 "InChI=1S/C21H23ClN4O2/c1-13(21(28)25-17-4-6-18(22)20(10-17)26(2)3)24-16-5-7-19-15(9-16)8-14(12-27)11-23-19/h4-11,13,24,27H,12H2,1-3H3,(H,25,28)/t13-/m0/s1" VP4 InChIKey InChI 1.03 DPOWTSNHUDZSRA-ZDUSSCGKSA-N VP4 SMILES_CANONICAL CACTVS 3.385 "C[C@H](Nc1ccc2ncc(CO)cc2c1)C(=O)Nc3ccc(Cl)c(c3)N(C)C" VP4 SMILES CACTVS 3.385 "C[CH](Nc1ccc2ncc(CO)cc2c1)C(=O)Nc3ccc(Cl)c(c3)N(C)C" VP4 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H](C(=O)Nc1ccc(c(c1)N(C)C)Cl)Nc2ccc3c(c2)cc(cn3)CO" VP4 SMILES "OpenEye OEToolkits" 2.0.7 "CC(C(=O)Nc1ccc(c(c1)N(C)C)Cl)Nc2ccc3c(c2)cc(cn3)CO" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier VP4 "SYSTEMATIC NAME" ACDLabs 12.01 "N-[4-chloro-3-(dimethylamino)phenyl]-N~2~-[3-(hydroxymethyl)quinolin-6-yl]-L-alaninamide" VP4 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S})-~{N}-[4-chloranyl-3-(dimethylamino)phenyl]-2-[[3-(hydroxymethyl)quinolin-6-yl]amino]propanamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VP4 "Create component" 2020-08-31 RCSB VP4 "Initial release" 2025-01-15 RCSB #