data_VP5 # _chem_comp.id VP5 _chem_comp.name "(3~{S},4~{R})-4,5,5-tris(oxidanyl)piperidine-3-carboxylic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C6 H11 N O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-03-23 _chem_comp.pdbx_modified_date 2024-01-05 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 177.155 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VP5 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8OHV _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VP5 C4 C1 C 0 1 N N N N N N 10.140 -10.175 -22.315 -1.798 1.207 -0.609 C4 VP5 1 VP5 C5 C2 C 0 1 N N N N N N 10.489 -10.730 -20.943 -1.634 -0.197 -0.024 C5 VP5 2 VP5 C6 C3 C 0 1 N N R N N N 10.006 -9.751 -19.861 -0.212 -0.696 -0.297 C6 VP5 3 VP5 N1 N1 N 0 1 N N N N N N 8.678 -9.920 -22.415 -0.817 2.112 0.003 N1 VP5 4 VP5 C3 C4 C 0 1 N N N N N N 8.234 -8.923 -21.442 0.557 1.680 -0.286 C3 VP5 5 VP5 O1 O1 O 0 1 N N N N N N 8.363 -7.160 -19.387 2.374 -1.171 -0.646 O1 VP5 6 VP5 C1 C5 C 0 1 N N N N N N 8.147 -8.316 -19.029 2.194 -0.163 -0.006 C1 VP5 7 VP5 O2 O2 O 0 1 N N N N N N 7.562 -8.624 -17.982 3.243 0.555 0.425 O2 VP5 8 VP5 C2 C6 C 0 1 N N S N N N 8.522 -9.398 -20.021 0.791 0.289 0.310 C2 VP5 9 VP5 O3 O3 O 0 1 N N N N N N 9.790 -11.946 -20.720 -1.863 -0.156 1.386 O3 VP5 10 VP5 O4 O4 O 0 1 N N N N N N 11.875 -10.970 -20.820 -2.575 -1.082 -0.635 O4 VP5 11 VP5 O5 O5 O 0 1 N N N N N N 10.248 -10.320 -18.578 -0.035 -1.983 0.297 O5 VP5 12 VP5 H1 H1 H 0 1 N N N N N N 10.435 -10.902 -23.086 -1.637 1.173 -1.687 H1 VP5 13 VP5 H2 H2 H 0 1 N N N N N N 10.684 -9.232 -22.474 -2.805 1.571 -0.404 H2 VP5 14 VP5 H3 H3 H 0 1 N N N N N N 10.587 -8.823 -19.963 -0.051 -0.765 -1.373 H3 VP5 15 VP5 H4 H4 H 0 1 N N N N N N 8.469 -9.590 -23.335 -0.966 3.064 -0.296 H4 VP5 16 VP5 H6 H6 H 0 1 N N N N N N 8.767 -7.978 -21.623 0.707 1.643 -1.365 H6 VP5 17 VP5 H7 H7 H 0 1 N N N N N N 7.152 -8.761 -21.557 1.260 2.387 0.155 H7 VP5 18 VP5 H8 H8 H 0 1 N N N N N N 7.314 -7.836 -17.513 4.123 0.225 0.199 H8 VP5 19 VP5 H9 H9 H 0 1 N N N N N N 7.920 -10.296 -19.817 0.655 0.329 1.390 H9 VP5 20 VP5 H10 H10 H 0 1 N N N N N N 10.013 -12.287 -19.862 -2.746 0.154 1.632 H10 VP5 21 VP5 H11 H11 H 0 1 N N N N N N 12.061 -11.315 -19.955 -3.498 -0.825 -0.505 H11 VP5 22 VP5 H12 H12 H 0 1 N N N N N N 9.952 -9.720 -17.904 -0.642 -2.658 -0.038 H12 VP5 23 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VP5 N1 C4 SING N N 1 VP5 N1 C3 SING N N 2 VP5 C4 C5 SING N N 3 VP5 C3 C2 SING N N 4 VP5 C5 O4 SING N N 5 VP5 C5 O3 SING N N 6 VP5 C5 C6 SING N N 7 VP5 C2 C6 SING N N 8 VP5 C2 C1 SING N N 9 VP5 C6 O5 SING N N 10 VP5 O1 C1 DOUB N N 11 VP5 C1 O2 SING N N 12 VP5 C4 H1 SING N N 13 VP5 C4 H2 SING N N 14 VP5 C6 H3 SING N N 15 VP5 N1 H4 SING N N 16 VP5 C3 H6 SING N N 17 VP5 C3 H7 SING N N 18 VP5 O2 H8 SING N N 19 VP5 C2 H9 SING N N 20 VP5 O3 H10 SING N N 21 VP5 O4 H11 SING N N 22 VP5 O5 H12 SING N N 23 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VP5 InChI InChI 1.06 "InChI=1S/C6H11NO5/c8-4-3(5(9)10)1-7-2-6(4,11)12/h3-4,7-8,11-12H,1-2H2,(H,9,10)/t3-,4+/m0/s1" VP5 InChIKey InChI 1.06 VJJFPBNJYGLWRR-IUYQGCFVSA-N VP5 SMILES_CANONICAL CACTVS 3.385 "O[C@@H]1[C@H](CNCC1(O)O)C(O)=O" VP5 SMILES CACTVS 3.385 "O[CH]1[CH](CNCC1(O)O)C(O)=O" VP5 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C1[C@@H]([C@H](C(CN1)(O)O)O)C(=O)O" VP5 SMILES "OpenEye OEToolkits" 2.0.7 "C1C(C(C(CN1)(O)O)O)C(=O)O" # _pdbx_chem_comp_identifier.comp_id VP5 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(3~{S},4~{R})-4,5,5-tris(oxidanyl)piperidine-3-carboxylic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VP5 "Create component" 2023-03-23 PDBE VP5 "Initial release" 2024-01-10 RCSB #