data_VP6 # _chem_comp.id VP6 _chem_comp.name "(3-azanyl-4-fluoranyl-5,7,8,9-tetrahydropyrido[4,3-c]azepin-6-yl)-[6-(2-oxidanylpropan-2-yl)-1H-indol-2-yl]methanone" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H23 F N4 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-08-02 _chem_comp.pdbx_modified_date 2023-12-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 382.431 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VP6 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8K5Y _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VP6 CAN C1 C 0 1 N N N N N N 16.599 5.570 -15.768 -4.263 -1.668 0.719 CAN VP6 1 VP6 CAO C2 C 0 1 N N N N N N 17.784 4.609 -15.705 -4.979 -0.521 -0.000 CAO VP6 2 VP6 CAP C3 C 0 1 N N N N N N 18.001 3.945 -17.047 -4.076 -0.041 -1.140 CAP VP6 3 VP6 CAQ C4 C 0 1 Y N N N N N 18.677 4.756 -18.001 -3.115 1.032 -0.702 CAQ VP6 4 VP6 CAW C5 C 0 1 Y N N N N N 19.894 4.257 -18.474 -3.079 2.199 -1.455 CAW VP6 5 VP6 NAV N1 N 0 1 Y N N N N N 20.629 4.979 -19.466 -2.214 3.157 -1.198 NAV VP6 6 VP6 CAU C6 C 0 1 Y N N N N N 20.185 6.205 -19.880 -1.339 3.055 -0.210 CAU VP6 7 VP6 NAX N2 N 0 1 N N N N N N 20.845 6.928 -20.786 -0.412 4.069 0.005 NAX VP6 8 VP6 CAT C7 C 0 1 Y N N N N N 18.990 6.717 -19.407 -1.346 1.934 0.615 CAT VP6 9 VP6 FAY F1 F 0 1 N N N N N N 18.491 7.979 -19.839 -0.471 1.836 1.640 FAY VP6 10 VP6 CAR C8 C 0 1 Y N N N N N 18.236 6.012 -18.433 -2.260 0.916 0.373 CAR VP6 11 VP6 CAS C9 C 0 1 N N N N N N 17.035 6.636 -18.052 -2.318 -0.231 1.342 CAS VP6 12 VP6 NAM N3 N 0 1 N N N N N N 16.992 6.771 -16.552 -2.822 -1.449 0.707 NAM VP6 13 VP6 CAK C10 C 0 1 N N N N N N 17.321 8.032 -16.067 -1.985 -2.336 0.133 CAK VP6 14 VP6 OAL O1 O 0 1 N N N N N N 17.636 8.917 -16.907 -2.414 -3.395 -0.285 OAL VP6 15 VP6 CAB C11 C 0 1 Y N N N N N 17.514 8.384 -14.715 -0.553 -2.023 0.012 CAB VP6 16 VP6 CAA C12 C 0 1 Y N N N N N 17.768 7.624 -13.516 0.409 -2.888 -0.402 CAA VP6 17 VP6 CAE C13 C 0 1 Y N N N N N 17.881 8.572 -12.521 1.646 -2.199 -0.377 CAE VP6 18 VP6 CAF C14 C 0 1 Y N N N N N 18.207 8.468 -11.157 2.960 -2.570 -0.692 CAF VP6 19 VP6 CAG C15 C 0 1 Y N N N N N 18.196 9.640 -10.394 3.971 -1.662 -0.565 CAG VP6 20 VP6 CAH C16 C 0 1 Y N N N N N 17.917 10.925 -10.961 3.710 -0.370 -0.126 CAH VP6 21 VP6 CAJ C17 C 0 1 N N N N N N 17.964 12.117 -10.122 4.842 0.615 0.007 CAJ VP6 22 VP6 CBA C18 C 0 1 N N N N N N 19.407 12.269 -9.509 6.134 -0.133 0.342 CBA VP6 23 VP6 CBB C19 C 0 1 N N N N N N 17.765 13.392 -10.882 5.018 1.371 -1.312 CBB VP6 24 VP6 OAZ O2 O 0 1 N N N N N N 16.957 12.026 -9.051 4.545 1.544 1.051 OAZ VP6 25 VP6 CAI C20 C 0 1 Y N N N N N 17.691 10.967 -12.353 2.427 0.018 0.189 CAI VP6 26 VP6 CAD C21 C 0 1 Y N N N N N 17.642 9.829 -13.057 1.379 -0.890 0.068 CAD VP6 27 VP6 NAC N4 N 0 1 Y N N N N N 17.406 9.697 -14.387 0.026 -0.801 0.295 NAC VP6 28 VP6 H1 H1 H 0 1 N N N N N N 16.314 5.871 -14.749 -4.612 -1.720 1.750 H1 VP6 29 VP6 H2 H2 H 0 1 N N N N N N 15.747 5.074 -16.256 -4.487 -2.607 0.213 H2 VP6 30 VP6 H3 H3 H 0 1 N N N N N N 17.584 3.837 -14.947 -5.927 -0.874 -0.405 H3 VP6 31 VP6 H4 H4 H 0 1 N N N N N N 18.689 5.169 -15.428 -5.158 0.297 0.698 H4 VP6 32 VP6 H5 H5 H 0 1 N N N N N N 17.018 3.675 -17.460 -3.507 -0.890 -1.520 H5 VP6 33 VP6 H6 H6 H 0 1 N N N N N N 18.595 3.033 -16.888 -4.700 0.353 -1.942 H6 VP6 34 VP6 H7 H7 H 0 1 N N N N N N 20.280 3.324 -18.090 -3.776 2.322 -2.272 H7 VP6 35 VP6 H8 H8 H 0 1 N N N N N N 21.663 6.432 -21.077 -0.407 4.851 -0.570 H8 VP6 36 VP6 H9 H9 H 0 1 N N N N N N 20.255 7.090 -21.577 0.230 3.995 0.728 H9 VP6 37 VP6 H10 H10 H 0 1 N N N N N N 16.979 7.634 -18.512 -1.318 -0.420 1.730 H10 VP6 38 VP6 H11 H11 H 0 1 N N N N N N 16.183 6.028 -18.390 -2.975 0.036 2.170 H11 VP6 39 VP6 H12 H12 H 0 1 N N N N N N 17.851 6.552 -13.419 0.258 -3.916 -0.697 H12 VP6 40 VP6 H13 H13 H 0 1 N N N N N N 18.457 7.515 -10.714 3.173 -3.573 -1.034 H13 VP6 41 VP6 H14 H14 H 0 1 N N N N N N 18.406 9.573 -9.337 4.983 -1.951 -0.808 H14 VP6 42 VP6 H15 H15 H 0 1 N N N N N N 19.444 13.168 -8.876 6.360 -0.842 -0.455 H15 VP6 43 VP6 H16 H16 H 0 1 N N N N N N 19.642 11.383 -8.902 6.952 0.580 0.437 H16 VP6 44 VP6 H17 H17 H 0 1 N N N N N N 20.142 12.362 -10.322 6.009 -0.671 1.281 H17 VP6 45 VP6 H18 H18 H 0 1 N N N N N N 17.813 14.244 -10.188 4.098 1.904 -1.551 H18 VP6 46 VP6 H19 H19 H 0 1 N N N N N N 18.554 13.493 -11.642 5.837 2.084 -1.216 H19 VP6 47 VP6 H20 H20 H 0 1 N N N N N N 16.782 13.375 -11.375 5.244 0.662 -2.109 H20 VP6 48 VP6 H21 H21 H 0 1 N N N N N N 16.997 12.807 -8.511 4.421 1.134 1.918 H21 VP6 49 VP6 H22 H22 H 0 1 N N N N N N 17.558 11.916 -12.850 2.235 1.025 0.530 H22 VP6 50 VP6 H23 H23 H 0 1 N N N N N N 17.189 10.441 -15.019 -0.444 -0.012 0.605 H23 VP6 51 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VP6 NAX CAU SING N N 1 VP6 CAU NAV DOUB Y N 2 VP6 CAU CAT SING Y N 3 VP6 FAY CAT SING N N 4 VP6 NAV CAW SING Y N 5 VP6 CAT CAR DOUB Y N 6 VP6 CAW CAQ DOUB Y N 7 VP6 CAR CAS SING N N 8 VP6 CAR CAQ SING Y N 9 VP6 CAS NAM SING N N 10 VP6 CAQ CAP SING N N 11 VP6 CAP CAO SING N N 12 VP6 OAL CAK DOUB N N 13 VP6 NAM CAK SING N N 14 VP6 NAM CAN SING N N 15 VP6 CAK CAB SING N N 16 VP6 CAN CAO SING N N 17 VP6 CAB NAC SING Y N 18 VP6 CAB CAA DOUB Y N 19 VP6 NAC CAD SING Y N 20 VP6 CAA CAE SING Y N 21 VP6 CAD CAE DOUB Y N 22 VP6 CAD CAI SING Y N 23 VP6 CAE CAF SING Y N 24 VP6 CAI CAH DOUB Y N 25 VP6 CAF CAG DOUB Y N 26 VP6 CAH CAG SING Y N 27 VP6 CAH CAJ SING N N 28 VP6 CBB CAJ SING N N 29 VP6 CAJ CBA SING N N 30 VP6 CAJ OAZ SING N N 31 VP6 CAN H1 SING N N 32 VP6 CAN H2 SING N N 33 VP6 CAO H3 SING N N 34 VP6 CAO H4 SING N N 35 VP6 CAP H5 SING N N 36 VP6 CAP H6 SING N N 37 VP6 CAW H7 SING N N 38 VP6 NAX H8 SING N N 39 VP6 NAX H9 SING N N 40 VP6 CAS H10 SING N N 41 VP6 CAS H11 SING N N 42 VP6 CAA H12 SING N N 43 VP6 CAF H13 SING N N 44 VP6 CAG H14 SING N N 45 VP6 CBA H15 SING N N 46 VP6 CBA H16 SING N N 47 VP6 CBA H17 SING N N 48 VP6 CBB H18 SING N N 49 VP6 CBB H19 SING N N 50 VP6 CBB H20 SING N N 51 VP6 OAZ H21 SING N N 52 VP6 CAI H22 SING N N 53 VP6 NAC H23 SING N N 54 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VP6 InChI InChI 1.06 "InChI=1S/C21H23FN4O2/c1-21(2,28)14-6-5-12-8-17(25-16(12)9-14)20(27)26-7-3-4-13-10-24-19(23)18(22)15(13)11-26/h5-6,8-10,25,28H,3-4,7,11H2,1-2H3,(H2,23,24)" VP6 InChIKey InChI 1.06 GKQSKUWMVJZQIF-UHFFFAOYSA-N VP6 SMILES_CANONICAL CACTVS 3.385 "CC(C)(O)c1ccc2cc([nH]c2c1)C(=O)N3CCCc4cnc(N)c(F)c4C3" VP6 SMILES CACTVS 3.385 "CC(C)(O)c1ccc2cc([nH]c2c1)C(=O)N3CCCc4cnc(N)c(F)c4C3" VP6 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)(c1ccc2cc([nH]c2c1)C(=O)N3CCCc4cnc(c(c4C3)F)N)O" VP6 SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)(c1ccc2cc([nH]c2c1)C(=O)N3CCCc4cnc(c(c4C3)F)N)O" # _pdbx_chem_comp_identifier.comp_id VP6 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(3-azanyl-4-fluoranyl-5,7,8,9-tetrahydropyrido[4,3-c]azepin-6-yl)-[6-(2-oxidanylpropan-2-yl)-1~{H}-indol-2-yl]methanone" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VP6 "Create component" 2023-08-02 PDBJ VP6 "Initial release" 2023-12-06 RCSB #