data_VP9 # _chem_comp.id VP9 _chem_comp.name "4-azanyl-2-[(3~{S})-2,6-bis(oxidanylidene)piperidin-3-yl]-7-methoxy-isoindole-1,3-dione" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C14 H13 N3 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-03-24 _chem_comp.pdbx_modified_date 2023-07-14 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 303.270 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VP9 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8OJH _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VP9 C1 C1 C 0 1 Y N N 8.619 58.833 -3.483 2.767 -1.202 -0.063 C1 VP9 1 VP9 C2 C2 C 0 1 Y N N 8.755 59.716 -2.427 4.046 -0.644 -0.010 C2 VP9 2 VP9 C3 C3 C 0 1 Y N N 9.144 59.246 -1.186 4.214 0.720 0.024 C3 VP9 3 VP9 C4 C4 C 0 1 Y N N 9.414 57.894 -0.966 3.105 1.572 0.006 C4 VP9 4 VP9 C5 C5 C 0 1 Y N N 9.286 57.010 -2.063 1.823 1.032 -0.047 C5 VP9 5 VP9 C6 C6 C 0 1 Y N N 8.882 57.475 -3.301 1.653 -0.371 -0.081 C6 VP9 6 VP9 O2 O1 O 0 1 N N N 10.596 50.014 -3.365 -5.578 -0.901 -0.145 O2 VP9 7 VP9 O3 O2 O 0 1 N N N 7.560 53.229 -2.518 -1.879 0.041 2.064 O3 VP9 8 VP9 O4 O3 O 0 1 N N N 9.896 54.771 -1.325 0.194 2.787 -0.062 O4 VP9 9 VP9 N1 N1 N 0 1 N N N 9.131 51.663 -2.934 -3.731 -0.428 0.963 N1 VP9 10 VP9 C7 C7 C 0 1 N N N 8.817 56.327 -4.231 0.199 -0.600 -0.133 C7 VP9 11 VP9 C8 C8 C 0 1 N N S 9.298 53.859 -4.026 -1.876 0.771 -0.171 C8 VP9 12 VP9 C9 C9 C 0 1 N N N 10.760 53.523 -4.198 -2.432 0.136 -1.450 C9 VP9 13 VP9 C10 C10 C 0 1 N N N 10.900 52.057 -4.564 -3.963 0.240 -1.417 C10 VP9 14 VP9 C11 C11 C 0 1 N N N 10.219 51.158 -3.583 -4.474 -0.400 -0.154 C11 VP9 15 VP9 C12 C12 C 0 1 N N N 8.595 52.908 -3.083 -2.500 0.102 1.025 C12 VP9 16 VP9 C13 C13 C 0 1 N N N 9.514 55.550 -2.171 0.466 1.602 -0.079 C13 VP9 17 VP9 N2 N2 N 0 1 N N N 9.759 57.444 0.275 3.281 2.948 0.041 N2 VP9 18 VP9 N N3 N 0 1 N N N 9.211 55.209 -3.492 -0.423 0.594 -0.128 N VP9 19 VP9 O1 O4 O 0 1 N N N 8.469 56.303 -5.389 -0.348 -1.684 -0.173 O1 VP9 20 VP9 O O5 O 0 1 N N N 8.239 59.196 -4.741 2.612 -2.549 -0.101 O VP9 21 VP9 C C14 C 0 1 N N N 8.027 60.578 -4.984 3.803 -3.339 -0.079 C VP9 22 VP9 H1 H1 H 0 1 N N N 8.558 60.768 -2.571 4.912 -1.290 0.004 H1 VP9 23 VP9 H2 H2 H 0 1 N N N 9.241 59.942 -0.366 5.209 1.137 0.064 H2 VP9 24 VP9 H3 H3 H 0 1 N N N 8.679 51.056 -2.280 -4.100 -0.843 1.758 H3 VP9 25 VP9 H4 H4 H 0 1 N N N 8.804 53.817 -5.008 -2.114 1.835 -0.159 H4 VP9 26 VP9 H5 H5 H 0 1 N N N 11.295 53.719 -3.257 -2.049 0.669 -2.320 H5 VP9 27 VP9 H6 H6 H 0 1 N N N 11.188 54.144 -4.999 -2.131 -0.910 -1.500 H6 VP9 28 VP9 H7 H7 H 0 1 N N N 10.456 51.897 -5.558 -4.258 1.289 -1.442 H7 VP9 29 VP9 H8 H8 H 0 1 N N N 11.969 51.801 -4.595 -4.382 -0.278 -2.281 H8 VP9 30 VP9 H9 H9 H 0 1 N N N 9.797 58.215 0.911 4.176 3.322 0.078 H9 VP9 31 VP9 H10 H10 H 0 1 N N N 9.077 56.785 0.592 2.510 3.537 0.029 H10 VP9 32 VP9 H11 H11 H 0 1 N N N 7.727 60.725 -6.032 4.420 -3.091 -0.942 H11 VP9 33 VP9 H12 H12 H 0 1 N N N 7.233 60.949 -4.320 4.358 -3.134 0.837 H12 VP9 34 VP9 H13 H13 H 0 1 N N N 8.957 61.132 -4.788 3.538 -4.396 -0.114 H13 VP9 35 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VP9 O1 C7 DOUB N N 1 VP9 C O SING N N 2 VP9 O C1 SING N N 3 VP9 C10 C9 SING N N 4 VP9 C10 C11 SING N N 5 VP9 C7 N SING N N 6 VP9 C7 C6 SING N N 7 VP9 C9 C8 SING N N 8 VP9 C8 N SING N N 9 VP9 C8 C12 SING N N 10 VP9 C11 O2 DOUB N N 11 VP9 C11 N1 SING N N 12 VP9 N C13 SING N N 13 VP9 C1 C6 DOUB Y N 14 VP9 C1 C2 SING Y N 15 VP9 C6 C5 SING Y N 16 VP9 C12 N1 SING N N 17 VP9 C12 O3 DOUB N N 18 VP9 C2 C3 DOUB Y N 19 VP9 C13 C5 SING N N 20 VP9 C13 O4 DOUB N N 21 VP9 C5 C4 DOUB Y N 22 VP9 C3 C4 SING Y N 23 VP9 C4 N2 SING N N 24 VP9 C2 H1 SING N N 25 VP9 C3 H2 SING N N 26 VP9 N1 H3 SING N N 27 VP9 C8 H4 SING N N 28 VP9 C9 H5 SING N N 29 VP9 C9 H6 SING N N 30 VP9 C10 H7 SING N N 31 VP9 C10 H8 SING N N 32 VP9 N2 H9 SING N N 33 VP9 N2 H10 SING N N 34 VP9 C H11 SING N N 35 VP9 C H12 SING N N 36 VP9 C H13 SING N N 37 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VP9 InChI InChI 1.06 "InChI=1S/C14H13N3O5/c1-22-8-4-2-6(15)10-11(8)14(21)17(13(10)20)7-3-5-9(18)16-12(7)19/h2,4,7H,3,5,15H2,1H3,(H,16,18,19)/t7-/m0/s1" VP9 InChIKey InChI 1.06 JQKAGYPIPZUGHW-ZETCQYMHSA-N VP9 SMILES_CANONICAL CACTVS 3.385 "COc1ccc(N)c2C(=O)N([C@H]3CCC(=O)NC3=O)C(=O)c12" VP9 SMILES CACTVS 3.385 "COc1ccc(N)c2C(=O)N([CH]3CCC(=O)NC3=O)C(=O)c12" VP9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "COc1ccc(c2c1C(=O)N(C2=O)[C@H]3CCC(=O)NC3=O)N" VP9 SMILES "OpenEye OEToolkits" 2.0.7 "COc1ccc(c2c1C(=O)N(C2=O)C3CCC(=O)NC3=O)N" # _pdbx_chem_comp_identifier.comp_id VP9 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "4-azanyl-2-[(3~{S})-2,6-bis(oxidanylidene)piperidin-3-yl]-7-methoxy-isoindole-1,3-dione" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VP9 "Create component" 2023-03-24 PDBE VP9 "Initial release" 2023-07-19 RCSB #