data_VPB # _chem_comp.id VPB _chem_comp.name "(4S)-8-{2-[3-(morpholin-4-yl)-3-oxopropoxy]phenoxy}indolizine-2-carbonitrile" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C22 H21 N3 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-09-14 _chem_comp.pdbx_modified_date 2023-11-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 391.420 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VPB _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8U6S _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VPB C1 C1 C 0 1 N N N N N N 43.254 -19.960 21.181 -4.477 -0.644 0.240 C1 VPB 1 VPB C2 C2 C 0 1 N N N N N N 44.083 -21.510 22.968 -6.867 -0.609 0.798 C2 VPB 2 VPB C3 C3 C 0 1 N N N N N N 44.771 -21.474 24.335 -7.901 0.283 0.102 C3 VPB 3 VPB C4 C4 C 0 1 N N N N N N 44.856 -19.226 24.591 -6.541 2.241 0.378 C4 VPB 4 VPB C5 C5 C 0 1 N N N N N N 43.856 -19.033 23.452 -5.437 1.450 1.088 C5 VPB 5 VPB C6 C6 C 0 1 N N N N N N 42.868 -18.567 20.672 -3.138 0.040 0.138 C6 VPB 6 VPB C7 C7 C 0 1 N N N N N N 44.045 -17.830 20.032 -2.100 -0.949 -0.396 C7 VPB 7 VPB C8 C8 C 0 1 Y N N N N N 46.032 -16.691 20.407 0.210 -1.046 -0.954 C8 VPB 8 VPB O1 O1 O 0 1 N N N N N N 43.145 -20.883 20.448 -4.589 -1.809 -0.078 O1 VPB 9 VPB C17 C9 C 0 1 Y N N N N N 46.319 -13.480 25.154 5.537 2.270 -0.787 C17 VPB 10 VPB C16 C10 C 0 1 Y N N N N N 45.846 -13.445 23.858 4.631 2.733 -1.668 C16 VPB 11 VPB C15 C11 C 0 1 Y N N N N N 46.053 -14.493 23.026 3.311 2.247 -1.661 C15 VPB 12 VPB O2 O2 O 0 1 N N N N N N 45.616 -20.364 24.388 -7.802 1.612 0.620 O2 VPB 13 VPB C14 C12 C 0 1 Y N N N N N 46.726 -15.579 23.478 2.945 1.300 -0.752 C14 VPB 14 VPB C13 C13 C 0 1 Y N N N N N 47.058 -16.353 21.266 1.475 -0.478 -1.074 C13 VPB 15 VPB C12 C14 C 0 1 Y N N N N N 48.218 -15.757 20.765 2.532 -1.242 -1.544 C12 VPB 16 VPB C9 C15 C 0 1 Y N N N N N 46.119 -16.424 19.042 0.014 -2.373 -1.300 C9 VPB 17 VPB C11 C16 C 0 1 Y N N N N N 48.316 -15.492 19.402 2.328 -2.564 -1.892 C11 VPB 18 VPB C10 C17 C 0 1 Y N N N N N 47.265 -15.822 18.547 1.072 -3.129 -1.768 C10 VPB 19 VPB C18 C18 C 0 1 Y N N N N N 47.192 -15.593 24.808 3.907 0.820 0.173 C18 VPB 20 VPB C19 C19 C 0 1 Y N N N N N 47.885 -16.491 25.621 3.829 -0.115 1.184 C19 VPB 21 VPB C20 C20 C 0 1 Y N N N N N 48.049 -15.866 26.901 5.106 -0.187 1.780 C20 VPB 22 VPB C21 C21 C 0 1 N N N N N N 48.744 -16.427 28.147 5.487 -1.030 2.873 C21 VPB 23 VPB C22 C22 C 0 1 Y N N N N N 47.433 -14.625 26.791 5.921 0.706 1.112 C22 VPB 24 VPB N1 N1 N 0 1 N N N N N N 43.725 -20.167 22.550 -5.549 0.037 0.690 N1 VPB 25 VPB N2 N2 N 0 1 Y N N N N N 46.985 -14.563 25.591 5.194 1.314 0.140 N2 VPB 26 VPB N3 N3 N 0 1 N N N N N N 49.259 -16.834 29.079 5.789 -1.699 3.740 N3 VPB 27 VPB O3 O3 O 0 1 N N N N N N 44.907 -17.274 20.968 -0.830 -0.301 -0.492 O3 VPB 28 VPB O4 O4 O 0 1 N N N N N N 46.903 -16.667 22.622 1.674 0.822 -0.731 O4 VPB 29 VPB H1 H1 H 0 1 N N N N N N 43.173 -22.124 23.036 -7.132 -0.728 1.849 H1 VPB 30 VPB H2 H2 H 0 1 N N N N N N 44.768 -21.950 22.228 -6.839 -1.585 0.314 H2 VPB 31 VPB H3 H3 H 0 1 N N N N N N 44.012 -21.399 25.128 -7.709 0.295 -0.970 H3 VPB 32 VPB H4 H4 H 0 1 N N N N N N 45.359 -22.393 24.476 -8.902 -0.106 0.289 H4 VPB 33 VPB H5 H5 H 0 1 N N N N N N 45.521 -18.351 24.639 -6.563 3.261 0.763 H5 VPB 34 VPB H6 H6 H 0 1 N N N N N N 44.308 -19.322 25.540 -6.343 2.261 -0.694 H6 VPB 35 VPB H7 H7 H 0 1 N N N N N N 44.176 -18.162 22.861 -4.461 1.837 0.794 H7 VPB 36 VPB H8 H8 H 0 1 N N N N N N 42.869 -18.833 23.895 -5.558 1.538 2.167 H8 VPB 37 VPB H9 H9 H 0 1 N N N N N N 42.498 -17.972 21.520 -3.214 0.888 -0.541 H9 VPB 38 VPB H10 H10 H 0 1 N N N N N N 42.070 -18.674 19.923 -2.833 0.390 1.124 H10 VPB 39 VPB H11 H11 H 0 1 N N N N N N 44.611 -18.542 19.413 -2.023 -1.798 0.284 H11 VPB 40 VPB H12 H12 H 0 1 N N N N N N 43.651 -17.024 19.396 -2.405 -1.299 -1.382 H12 VPB 41 VPB H13 H13 H 0 1 N N N N N N 46.155 -12.641 25.814 6.548 2.651 -0.811 H13 VPB 42 VPB H14 H14 H 0 1 N N N N N N 45.308 -12.577 23.506 4.921 3.484 -2.388 H14 VPB 43 VPB H15 H15 H 0 1 N N N N N N 45.685 -14.464 22.011 2.590 2.624 -2.372 H15 VPB 44 VPB H16 H16 H 0 1 N N N N N N 49.031 -15.504 21.429 3.515 -0.804 -1.638 H16 VPB 45 VPB H17 H17 H 0 1 N N N N N N 45.306 -16.682 18.380 -0.966 -2.817 -1.204 H17 VPB 46 VPB H18 H18 H 0 1 N N N N N N 49.208 -15.030 19.006 3.152 -3.158 -2.259 H18 VPB 47 VPB H19 H19 H 0 1 N N N N N N 47.345 -15.607 17.492 0.918 -4.163 -2.038 H19 VPB 48 VPB H20 H20 H 0 1 N N N N N N 48.233 -17.474 25.339 2.955 -0.684 1.467 H20 VPB 49 VPB H21 H21 H 0 1 N N N N N N 47.349 -13.869 27.558 6.963 0.890 1.328 H21 VPB 50 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VPB C10 C9 DOUB Y N 1 VPB C10 C11 SING Y N 2 VPB C9 C8 SING Y N 3 VPB C11 C12 DOUB Y N 4 VPB C7 C6 SING N N 5 VPB C7 O3 SING N N 6 VPB C8 O3 SING N N 7 VPB C8 C13 DOUB Y N 8 VPB O1 C1 DOUB N N 9 VPB C6 C1 SING N N 10 VPB C12 C13 SING Y N 11 VPB C1 N1 SING N N 12 VPB C13 O4 SING N N 13 VPB N1 C2 SING N N 14 VPB N1 C5 SING N N 15 VPB O4 C14 SING N N 16 VPB C2 C3 SING N N 17 VPB C15 C14 DOUB Y N 18 VPB C15 C16 SING Y N 19 VPB C5 C4 SING N N 20 VPB C14 C18 SING Y N 21 VPB C16 C17 DOUB Y N 22 VPB C3 O2 SING N N 23 VPB O2 C4 SING N N 24 VPB C18 N2 SING Y N 25 VPB C18 C19 DOUB Y N 26 VPB C17 N2 SING Y N 27 VPB N2 C22 SING Y N 28 VPB C19 C20 SING Y N 29 VPB C22 C20 DOUB Y N 30 VPB C20 C21 SING N N 31 VPB C21 N3 TRIP N N 32 VPB C2 H1 SING N N 33 VPB C2 H2 SING N N 34 VPB C3 H3 SING N N 35 VPB C3 H4 SING N N 36 VPB C4 H5 SING N N 37 VPB C4 H6 SING N N 38 VPB C5 H7 SING N N 39 VPB C5 H8 SING N N 40 VPB C6 H9 SING N N 41 VPB C6 H10 SING N N 42 VPB C7 H11 SING N N 43 VPB C7 H12 SING N N 44 VPB C17 H13 SING N N 45 VPB C16 H14 SING N N 46 VPB C15 H15 SING N N 47 VPB C12 H16 SING N N 48 VPB C9 H17 SING N N 49 VPB C11 H18 SING N N 50 VPB C10 H19 SING N N 51 VPB C19 H20 SING N N 52 VPB C22 H21 SING N N 53 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VPB SMILES ACDLabs 12.01 "O=C(CCOc1ccccc1Oc1cccn2cc(C#N)cc21)N1CCOCC1" VPB InChI InChI 1.06 "InChI=1S/C22H21N3O4/c23-15-17-14-18-19(6-3-8-25(18)16-17)29-21-5-2-1-4-20(21)28-11-7-22(26)24-9-12-27-13-10-24/h1-6,8,14,16H,7,9-13H2" VPB InChIKey InChI 1.06 QXEAIZYIBWVAEX-UHFFFAOYSA-N VPB SMILES_CANONICAL CACTVS 3.385 "O=C(CCOc1ccccc1Oc2cccn3cc(cc23)C#N)N4CCOCC4" VPB SMILES CACTVS 3.385 "O=C(CCOc1ccccc1Oc2cccn3cc(cc23)C#N)N4CCOCC4" VPB SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(c(c1)OCCC(=O)N2CCOCC2)Oc3cccn4c3cc(c4)C#N" VPB SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(c(c1)OCCC(=O)N2CCOCC2)Oc3cccn4c3cc(c4)C#N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier VPB "SYSTEMATIC NAME" ACDLabs 12.01 "(4S)-8-{2-[3-(morpholin-4-yl)-3-oxopropoxy]phenoxy}indolizine-2-carbonitrile" VPB "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "8-[2-(3-morpholin-4-yl-3-oxidanylidene-propoxy)phenoxy]indolizine-2-carbonitrile" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VPB "Create component" 2023-09-14 RCSB VPB "Initial release" 2023-11-08 RCSB #