data_VPH # _chem_comp.id VPH _chem_comp.name "methyl (2~{R},4~{R},5~{R},6~{R})-6-(hydroxymethyl)-4,5-bis(oxidanyl)oxane-2-carboxylate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C8 H14 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-03-24 _chem_comp.pdbx_modified_date 2023-09-08 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 206.193 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VPH _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8OJI _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VPH "C5'" C1 C 0 1 N N R 24.467 40.618 32.579 -1.572 -0.634 0.493 "C5'" VPH 1 VPH "C4'" C2 C 0 1 N N R 23.774 40.271 31.270 -1.992 0.769 0.047 "C4'" VPH 2 VPH "C3'" C3 C 0 1 N N R 23.443 38.787 31.259 -0.983 1.790 0.582 "C3'" VPH 3 VPH "C2'" C4 C 0 1 N N N 22.653 38.417 32.497 0.417 1.417 0.084 "C2'" VPH 4 VPH "C1'" C5 C 0 1 N N R 23.388 38.869 33.760 0.744 -0.011 0.528 "C1'" VPH 5 VPH "O5'" O1 O 0 1 N N N 23.621 40.277 33.687 -0.250 -0.905 0.023 "O5'" VPH 6 VPH "C6'" C6 C 0 1 N N N 24.828 42.074 32.708 -2.541 -1.665 -0.087 "C6'" VPH 7 VPH "O6'" O2 O 0 1 N N N 25.849 42.223 33.681 -2.218 -2.961 0.421 "O6'" VPH 8 VPH "O4'" O3 O 0 1 N N N 22.582 41.024 31.155 -2.022 0.828 -1.380 "O4'" VPH 9 VPH "O3'" O4 O 0 1 N N N 22.693 38.443 30.100 -1.327 3.095 0.110 "O3'" VPH 10 VPH C7 C7 C 0 1 N N N 22.628 38.506 35.028 2.095 -0.407 -0.008 C7 VPH 11 VPH O8 O5 O 0 1 N N N 22.205 39.593 35.656 3.198 0.233 0.412 O8 VPH 12 VPH C9 C8 C 0 1 N N N 20.925 39.478 36.318 4.466 -0.201 -0.147 C9 VPH 13 VPH O7 O6 O 0 1 N N N 22.440 37.382 35.400 2.187 -1.300 -0.817 O7 VPH 14 VPH H1 H1 H 0 1 N N N 25.394 40.028 32.639 -1.589 -0.690 1.581 H1 VPH 15 VPH H2 H2 H 0 1 N N N 24.453 40.494 30.434 -2.983 0.995 0.442 H2 VPH 16 VPH H3 H3 H 0 1 N N N 24.387 38.223 31.269 -0.997 1.780 1.672 H3 VPH 17 VPH H4 H4 H 0 1 N N N 21.669 38.906 32.457 0.444 1.475 -1.004 H4 VPH 18 VPH H5 H5 H 0 1 N N N 22.519 37.326 32.528 1.149 2.106 0.505 H5 VPH 19 VPH H6 H6 H 0 1 N N N 24.356 38.347 33.788 0.757 -0.059 1.617 H6 VPH 20 VPH H7 H7 H 0 1 N N N 25.187 42.450 31.739 -3.561 -1.407 0.198 H7 VPH 21 VPH H8 H8 H 0 1 N N N 23.941 42.646 33.017 -2.459 -1.670 -1.174 H8 VPH 22 VPH H9 H9 H 0 1 N N N 26.077 43.141 33.763 -2.794 -3.666 0.094 H9 VPH 23 VPH H10 H10 H 0 1 N N N 22.790 41.951 31.162 -2.281 1.691 -1.733 H10 VPH 24 VPH H11 H11 H 0 1 N N N 22.497 37.513 30.113 -0.728 3.792 0.411 H11 VPH 25 VPH H12 H12 H 0 1 N N N 20.675 40.433 36.803 4.448 -0.074 -1.230 H12 VPH 26 VPH H13 H13 H 0 1 N N N 20.150 39.229 35.578 5.273 0.397 0.275 H13 VPH 27 VPH H14 H14 H 0 1 N N N 20.975 38.684 37.077 4.628 -1.252 0.093 H14 VPH 28 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VPH "O3'" "C3'" SING N N 1 VPH "O4'" "C4'" SING N N 2 VPH "C3'" "C4'" SING N N 3 VPH "C3'" "C2'" SING N N 4 VPH "C4'" "C5'" SING N N 5 VPH "C2'" "C1'" SING N N 6 VPH "C5'" "C6'" SING N N 7 VPH "C5'" "O5'" SING N N 8 VPH "C6'" "O6'" SING N N 9 VPH "O5'" "C1'" SING N N 10 VPH "C1'" C7 SING N N 11 VPH C7 O7 DOUB N N 12 VPH C7 O8 SING N N 13 VPH O8 C9 SING N N 14 VPH "C5'" H1 SING N N 15 VPH "C4'" H2 SING N N 16 VPH "C3'" H3 SING N N 17 VPH "C2'" H4 SING N N 18 VPH "C2'" H5 SING N N 19 VPH "C1'" H6 SING N N 20 VPH "C6'" H7 SING N N 21 VPH "C6'" H8 SING N N 22 VPH "O6'" H9 SING N N 23 VPH "O4'" H10 SING N N 24 VPH "O3'" H11 SING N N 25 VPH C9 H12 SING N N 26 VPH C9 H13 SING N N 27 VPH C9 H14 SING N N 28 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VPH InChI InChI 1.06 "InChI=1S/C8H14O6/c1-13-8(12)5-2-4(10)7(11)6(3-9)14-5/h4-7,9-11H,2-3H2,1H3/t4-,5-,6-,7-/m1/s1" VPH InChIKey InChI 1.06 GCROCZNWGKBWPY-DBRKOABJSA-N VPH SMILES_CANONICAL CACTVS 3.385 "COC(=O)[C@H]1C[C@@H](O)[C@@H](O)[C@@H](CO)O1" VPH SMILES CACTVS 3.385 "COC(=O)[CH]1C[CH](O)[CH](O)[CH](CO)O1" VPH SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "COC(=O)[C@H]1C[C@H]([C@H]([C@H](O1)CO)O)O" VPH SMILES "OpenEye OEToolkits" 2.0.7 "COC(=O)C1CC(C(C(O1)CO)O)O" # _pdbx_chem_comp_identifier.comp_id VPH _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "methyl (2~{R},4~{R},5~{R},6~{R})-6-(hydroxymethyl)-4,5-bis(oxidanyl)oxane-2-carboxylate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VPH "Create component" 2023-03-24 PDBE VPH "Initial release" 2023-09-13 RCSB #