data_VPM # _chem_comp.id VPM _chem_comp.name "(2S)-2-hydroxy-2-(propan-2-yl)butanedioic acid" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C7 H12 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2014-03-04 _chem_comp.pdbx_modified_date 2014-08-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 176.167 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VPM _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4OV9 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VPM CAA CAA C 0 1 N N N 73.904 56.751 9.057 2.850 -0.068 -0.743 CAA VPM 1 VPM CAK CAK C 0 1 N N N 75.367 56.963 9.447 1.685 -0.997 -0.394 CAK VPM 2 VPM CAB CAB C 0 1 N N N 76.302 56.689 8.263 1.891 -1.567 1.011 CAB VPM 3 VPM CAL CAL C 0 1 N N S 75.677 58.263 10.226 0.374 -0.211 -0.438 CAL VPM 4 VPM CAJ CAJ C 0 1 N N N 77.105 58.223 10.791 0.477 0.989 0.467 CAJ VPM 5 VPM OAF OAF O 0 1 N N N 77.435 57.349 11.523 0.711 0.823 1.778 OAF VPM 6 VPM OAD OAD O 0 1 N N N 77.877 59.392 10.751 0.349 2.102 0.013 OAD VPM 7 VPM OAG OAG O 0 1 N N N 75.554 59.360 9.350 0.124 0.223 -1.777 OAG VPM 8 VPM CAH CAH C 0 1 N N N 74.747 58.486 11.427 -0.774 -1.107 0.031 CAH VPM 9 VPM CAI CAI C 0 1 N N N 73.571 59.458 11.294 -2.066 -0.332 -0.013 CAI VPM 10 VPM OAE OAE O 0 1 N N N 73.747 60.622 11.129 -2.068 0.819 -0.382 OAE VPM 11 VPM OAC OAC O 0 1 N N N 72.281 58.941 11.227 -3.214 -0.920 0.357 OAC VPM 12 VPM H1 H1 H 0 1 N N N 73.259 56.955 9.925 2.891 0.749 -0.022 H1 VPM 13 VPM H2 H2 H 0 1 N N N 73.641 57.435 8.236 3.784 -0.628 -0.711 H2 VPM 14 VPM H3 H3 H 0 1 N N N 73.759 55.711 8.729 2.703 0.338 -1.744 H3 VPM 15 VPM H4 H4 H 0 1 N N N 75.583 56.156 10.163 1.644 -1.814 -1.115 H4 VPM 16 VPM H5 H5 H 0 1 N N N 77.345 56.850 8.574 1.933 -0.750 1.732 H5 VPM 17 VPM H6 H6 H 0 1 N N N 76.175 55.649 7.929 1.062 -2.229 1.260 H6 VPM 18 VPM H7 H7 H 0 1 N N N 76.057 57.372 7.436 2.825 -2.127 1.043 H7 VPM 19 VPM H8 H8 H 0 1 N N N 78.221 57.607 11.991 0.769 1.622 2.319 H8 VPM 20 VPM H9 H9 H 0 1 N N N 76.325 59.910 9.421 0.045 -0.499 -2.416 H9 VPM 21 VPM H10 H10 H 0 1 N N N 74.325 57.506 11.692 -0.849 -1.974 -0.624 H10 VPM 22 VPM H11 H11 H 0 1 N N N 75.373 58.851 12.254 -0.583 -1.437 1.052 H11 VPM 23 VPM H12 H12 H 0 1 N N N 71.667 59.643 11.044 -4.017 -0.383 0.312 H12 VPM 24 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VPM CAB CAK SING N N 1 VPM CAA CAK SING N N 2 VPM OAG CAL SING N N 3 VPM CAK CAL SING N N 4 VPM CAL CAJ SING N N 5 VPM CAL CAH SING N N 6 VPM OAD CAJ DOUB N N 7 VPM CAJ OAF SING N N 8 VPM OAE CAI DOUB N N 9 VPM OAC CAI SING N N 10 VPM CAI CAH SING N N 11 VPM CAA H1 SING N N 12 VPM CAA H2 SING N N 13 VPM CAA H3 SING N N 14 VPM CAK H4 SING N N 15 VPM CAB H5 SING N N 16 VPM CAB H6 SING N N 17 VPM CAB H7 SING N N 18 VPM OAF H8 SING N N 19 VPM OAG H9 SING N N 20 VPM CAH H10 SING N N 21 VPM CAH H11 SING N N 22 VPM OAC H12 SING N N 23 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VPM SMILES ACDLabs 12.01 "O=C(O)C(O)(CC(=O)O)C(C)C" VPM InChI InChI 1.03 "InChI=1S/C7H12O5/c1-4(2)7(12,6(10)11)3-5(8)9/h4,12H,3H2,1-2H3,(H,8,9)(H,10,11)/t7-/m0/s1" VPM InChIKey InChI 1.03 BITYXLXUCSKTJS-ZETCQYMHSA-N VPM SMILES_CANONICAL CACTVS 3.385 "CC(C)[C@@](O)(CC(O)=O)C(O)=O" VPM SMILES CACTVS 3.385 "CC(C)[C](O)(CC(O)=O)C(O)=O" VPM SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CC(C)[C@@](CC(=O)O)(C(=O)O)O" VPM SMILES "OpenEye OEToolkits" 1.7.6 "CC(C)C(CC(=O)O)(C(=O)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier VPM "SYSTEMATIC NAME" ACDLabs 12.01 "(2S)-2-hydroxy-2-(propan-2-yl)butanedioic acid" VPM "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2S)-2-oxidanyl-2-propan-2-yl-butanedioic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VPM "Create component" 2014-03-04 PDBJ VPM "Initial release" 2014-08-20 RCSB #