data_VPQ # _chem_comp.id VPQ _chem_comp.name "(2~{R},3~{S},4~{S},5~{S},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxane-2-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C7 H13 N O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-03-24 _chem_comp.pdbx_modified_date 2023-09-08 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 207.181 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VPQ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8OJM _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VPQ O7 O1 O 0 1 N N N 21.923 39.938 35.734 -2.588 1.551 -0.632 O7 VPQ 1 VPQ "C5'" C1 C 0 1 N N R 24.240 40.993 32.571 1.253 0.740 0.309 "C5'" VPQ 2 VPQ "C4'" C2 C 0 1 N N S 23.729 40.398 31.255 1.574 -0.680 -0.166 "C4'" VPQ 3 VPQ "C3'" C3 C 0 1 N N S 23.461 38.906 31.423 0.584 -1.659 0.472 "C3'" VPQ 4 VPQ "C2'" C4 C 0 1 N N S 22.600 38.618 32.650 -0.843 -1.234 0.111 "C2'" VPQ 5 VPQ "C1'" C5 C 0 1 N N R 23.265 39.260 33.876 -1.070 0.207 0.576 "C1'" VPQ 6 VPQ "O5'" O2 O 0 1 N N N 23.333 40.671 33.644 -0.097 1.061 -0.030 "O5'" VPQ 7 VPQ "C6'" C6 C 0 1 N N N 24.360 42.502 32.523 2.200 1.732 -0.370 "C6'" VPQ 8 VPQ "O6'" O3 O 0 1 N N N 23.064 43.085 32.401 1.978 3.040 0.159 "O6'" VPQ 9 VPQ "O4'" O4 O 0 1 N N N 24.777 40.547 30.311 2.905 -1.025 0.223 "O4'" VPQ 10 VPQ "O3'" O5 O 0 1 N N N 22.902 38.354 30.234 0.829 -2.977 -0.024 "O3'" VPQ 11 VPQ C7 C7 C 0 1 N N N 22.452 39.042 35.130 -2.452 0.653 0.172 C7 VPQ 12 VPQ N1 N1 N 0 1 N N N 22.329 37.703 35.626 -3.536 0.055 0.705 N1 VPQ 13 VPQ O1 O6 O 0 1 N Y N 20.874 39.211 32.498 -1.021 -1.313 -1.305 O1 VPQ 14 VPQ H1 H1 H 0 1 N N N 25.232 40.567 32.784 1.380 0.798 1.390 H1 VPQ 15 VPQ H2 H2 H 0 1 N N N 22.813 40.916 30.935 1.486 -0.729 -1.252 H2 VPQ 16 VPQ H3 H3 H 0 1 N N N 24.435 38.425 31.597 0.705 -1.647 1.555 H3 VPQ 17 VPQ H4 H4 H 0 1 N N N 22.535 37.530 32.802 -1.556 -1.893 0.606 H4 VPQ 18 VPQ H5 H5 H 0 1 N N N 24.272 38.836 34.008 -0.974 0.259 1.660 H5 VPQ 19 VPQ H6 H6 H 0 1 N N N 24.974 42.792 31.658 3.232 1.435 -0.184 H6 VPQ 20 VPQ H7 H7 H 0 1 N N N 24.836 42.860 33.448 2.011 1.737 -1.444 H7 VPQ 21 VPQ H8 H8 H 0 1 N N N 23.143 44.031 32.371 2.545 3.722 -0.227 H8 VPQ 22 VPQ H9 H9 H 0 1 N N N 24.964 41.470 30.188 3.174 -1.915 -0.042 H9 VPQ 23 VPQ H10 H10 H 0 1 N N N 22.743 37.426 30.360 0.237 -3.650 0.339 H10 VPQ 24 VPQ H11 H11 H 0 1 N N N 21.810 37.525 36.462 -3.426 -0.663 1.348 H11 VPQ 25 VPQ H12 H12 H 0 1 N N N 22.762 36.947 35.136 -4.425 0.343 0.445 H12 VPQ 26 VPQ H13 H13 H 0 1 N N N 20.396 39.001 33.291 -1.904 -1.057 -1.605 H13 VPQ 27 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VPQ "O3'" "C3'" SING N N 1 VPQ "O4'" "C4'" SING N N 2 VPQ "C4'" "C3'" SING N N 3 VPQ "C4'" "C5'" SING N N 4 VPQ "C3'" "C2'" SING N N 5 VPQ "O6'" "C6'" SING N N 6 VPQ "C6'" "C5'" SING N N 7 VPQ "C5'" "O5'" SING N N 8 VPQ "C2'" "C1'" SING N N 9 VPQ "O5'" "C1'" SING N N 10 VPQ "C1'" C7 SING N N 11 VPQ C7 N1 SING N N 12 VPQ C7 O7 DOUB N N 13 VPQ "C2'" O1 SING N N 14 VPQ "C5'" H1 SING N N 15 VPQ "C4'" H2 SING N N 16 VPQ "C3'" H3 SING N N 17 VPQ "C2'" H4 SING N N 18 VPQ "C1'" H5 SING N N 19 VPQ "C6'" H6 SING N N 20 VPQ "C6'" H7 SING N N 21 VPQ "O6'" H8 SING N N 22 VPQ "O4'" H9 SING N N 23 VPQ "O3'" H10 SING N N 24 VPQ N1 H11 SING N N 25 VPQ N1 H12 SING N N 26 VPQ O1 H13 SING N N 27 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VPQ InChI InChI 1.06 "InChI=1S/C7H13NO6/c8-7(13)6-5(12)4(11)3(10)2(1-9)14-6/h2-6,9-12H,1H2,(H2,8,13)/t2-,3-,4+,5+,6-/m1/s1" VPQ InChIKey InChI 1.06 UKWLGCFJAVEFPE-RWOPYEJCSA-N VPQ SMILES_CANONICAL CACTVS 3.385 "NC(=O)[C@@H]1O[C@H](CO)[C@@H](O)[C@H](O)[C@@H]1O" VPQ SMILES CACTVS 3.385 "NC(=O)[CH]1O[CH](CO)[CH](O)[CH](O)[CH]1O" VPQ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C([C@@H]1[C@H]([C@@H]([C@@H]([C@@H](O1)C(=O)N)O)O)O)O" VPQ SMILES "OpenEye OEToolkits" 2.0.7 "C(C1C(C(C(C(O1)C(=O)N)O)O)O)O" # _pdbx_chem_comp_identifier.comp_id VPQ _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{R},3~{S},4~{S},5~{S},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxane-2-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VPQ "Create component" 2023-03-24 PDBE VPQ "Initial release" 2023-09-13 RCSB #