data_VPX
#
_chem_comp.id VPX
_chem_comp.name
;ethyl
[(1R,3aR,4aR,6R,8aR,9S,9aS)-9-{(E)-2-[5-(3-fluorophenyl)pyridin-2-yl]ethenyl}-1-methyl-3-oxododecahydronaphtho[2,3-c]fur
an-6-yl]carbamate
;
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C29 H33 F N2 O4"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms vorapaxar
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2012-08-23
_chem_comp.pdbx_modified_date 2020-06-17
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 492.582
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code VPX
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 3VW7
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBJ
# #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
VPX CAA CAA C 0 1 N N N -16.871 -8.997 58.591 8.401 5.428 0.873 CAA VPX 1
VPX CAO CAO C 0 1 N N N -15.518 -8.462 59.056 7.339 4.745 0.009 CAO VPX 2
VPX OAV OAV O 0 1 N N N -14.506 -9.421 58.761 6.878 3.538 0.671 OAV VPX 3
VPX CAX CAX C 0 1 N N N -13.301 -8.960 59.174 5.936 2.815 0.037 CAX VPX 4
VPX OAC OAC O 0 1 N N N -13.123 -7.754 59.323 5.510 3.183 -1.040 OAC VPX 5
VPX NAU NAU N 0 1 N N N -12.308 -9.821 59.414 5.465 1.683 0.597 NAU VPX 6
VPX CBE CBE C 0 1 N N R -10.981 -9.389 59.864 4.439 0.896 -0.093 CBE VPX 7
VPX CAR CAR C 0 1 N N N -10.419 -10.432 60.807 4.517 -0.559 0.367 CAR VPX 8
VPX CAP CAP C 0 1 N N N -10.063 -9.253 58.668 3.055 1.457 0.241 CAP VPX 9
VPX CAQ CAQ C 0 1 N N N -8.680 -8.835 59.131 1.991 0.637 -0.490 CAQ VPX 10
VPX CBI CBI C 0 1 N N R -8.114 -9.869 60.090 2.062 -0.824 -0.042 CBI VPX 11
VPX CBG CBG C 0 1 N N R -9.039 -10.014 61.275 3.453 -1.389 -0.355 CBG VPX 12
VPX CAS CAS C 0 1 N N N -8.491 -11.083 62.187 3.511 -2.827 0.159 CAS VPX 13
VPX CBH CBH C 0 1 N N R -7.146 -10.671 62.749 2.495 -3.718 -0.555 CBH VPX 14
VPX CAY CAY C 0 1 N N N -6.533 -11.811 63.237 2.309 -4.948 0.336 CAY VPX 15
VPX OAD OAD O 0 1 N N N -6.641 -12.137 64.417 2.972 -5.957 0.285 OAD VPX 16
VPX OAW OAW O 0 1 N N N -5.823 -12.514 62.307 1.290 -4.728 1.184 OAW VPX 17
VPX CBD CBD C 0 1 N N R -5.844 -11.699 61.113 0.685 -3.415 0.950 CBD VPX 18
VPX CAB CAB C 0 1 N N N -4.455 -11.701 60.476 -0.837 -3.489 1.089 CAB VPX 19
VPX CBJ CBJ C 0 1 N N S -6.162 -10.319 61.655 1.084 -3.100 -0.505 CBJ VPX 20
VPX CBF CBF C 0 1 N N S -6.763 -9.383 60.584 1.036 -1.635 -0.836 CBF VPX 21
VPX CAG CAG C 0 1 N N N -5.789 -9.232 59.407 -0.344 -1.110 -0.529 CAG VPX 22
VPX CAF CAF C 0 1 N N N -4.981 -7.956 59.630 -1.152 -0.751 -1.518 CAF VPX 23
VPX CBA CBA C 0 1 Y N N -4.007 -7.764 58.656 -2.503 -0.237 -1.218 CBA VPX 24
VPX CAK CAK C 0 1 Y N N -3.785 -8.693 57.644 -3.349 0.133 -2.265 CAK VPX 25
VPX CAL CAL C 0 1 Y N N -2.797 -8.460 56.690 -4.613 0.607 -1.974 CAL VPX 26
VPX NAT NAT N 0 1 Y N N -3.275 -6.646 58.716 -2.902 -0.137 0.046 NAT VPX 27
VPX CAM CAM C 0 1 Y N N -2.281 -6.386 57.776 -4.096 0.315 0.360 CAM VPX 28
VPX CBB CBB C 0 1 Y N N -2.041 -7.295 56.759 -4.997 0.698 -0.632 CBB VPX 29
VPX CBC CBC C 0 1 Y N N -1.045 -7.011 55.833 -6.345 1.202 -0.270 CBC VPX 30
VPX CAN CAN C 0 1 Y N N 0.034 -6.228 56.219 -6.721 1.290 1.069 CAN VPX 31
VPX CAZ CAZ C 0 1 Y N N 1.040 -5.925 55.313 -7.978 1.760 1.401 CAZ VPX 32
VPX FAE FAE F 0 1 N N N 2.076 -5.172 55.696 -8.345 1.847 2.698 FAE VPX 33
VPX CAI CAI C 0 1 Y N N 0.968 -6.406 54.012 -8.861 2.143 0.405 CAI VPX 34
VPX CAH CAH C 0 1 Y N N -0.113 -7.188 53.622 -8.491 2.057 -0.925 CAH VPX 35
VPX CAJ CAJ C 0 1 Y N N -1.121 -7.490 54.531 -7.236 1.593 -1.267 CAJ VPX 36
VPX H1 H1 H 0 1 N N N -17.655 -8.259 58.817 8.747 6.334 0.376 H1 VPX 37
VPX H2 H2 H 0 1 N N N -16.840 -9.179 57.507 7.970 5.686 1.841 H2 VPX 38
VPX H3 H3 H 0 1 N N N -17.092 -9.939 59.114 9.242 4.750 1.019 H3 VPX 39
VPX H4 H4 H 0 1 N N N -15.296 -7.520 58.533 6.498 5.424 -0.137 H4 VPX 40
VPX H5 H5 H 0 1 N N N -15.548 -8.281 60.141 7.769 4.488 -0.959 H5 VPX 41
VPX H6 H6 H 0 1 N N N -12.476 -10.798 59.282 5.805 1.390 1.457 H6 VPX 42
VPX H7 H7 H 0 1 N N N -11.052 -8.423 60.385 4.604 0.948 -1.169 H7 VPX 43
VPX H8 H8 H 0 1 N N N -11.084 -10.533 61.677 5.505 -0.959 0.139 H8 VPX 44
VPX H9 H9 H 0 1 N N N -10.350 -11.397 60.284 4.347 -0.609 1.443 H9 VPX 45
VPX H10 H10 H 0 1 N N N -10.465 -8.492 57.983 2.886 1.395 1.316 H10 VPX 46
VPX H11 H11 H 0 1 N N N -9.997 -10.219 58.145 2.996 2.497 -0.079 H11 VPX 47
VPX H12 H12 H 0 1 N N N -8.016 -8.746 58.259 1.003 1.039 -0.261 H12 VPX 48
VPX H13 H13 H 0 1 N N N -8.746 -7.863 59.642 2.164 0.696 -1.565 H13 VPX 49
VPX H14 H14 H 0 1 N N N -8.002 -10.836 59.577 1.851 -0.898 1.025 H14 VPX 50
VPX H15 H15 H 0 1 N N N -9.104 -9.059 61.816 3.629 -1.359 -1.431 H15 VPX 51
VPX H16 H16 H 0 1 N N N -9.195 -11.245 63.017 4.513 -3.224 -0.007 H16 VPX 52
VPX H17 H17 H 0 1 N N N -8.374 -12.017 61.618 3.301 -2.831 1.228 H17 VPX 53
VPX H18 H18 H 0 1 N N N -7.242 -9.863 63.489 2.810 -3.977 -1.566 H18 VPX 54
VPX H19 H19 H 0 1 N N N -6.608 -12.030 60.395 1.099 -2.673 1.632 H19 VPX 55
VPX H20 H20 H 0 1 N N N -4.232 -12.705 60.085 -1.236 -4.185 0.351 H20 VPX 56
VPX H21 H21 H 0 1 N N N -4.429 -10.973 59.652 -1.094 -3.835 2.090 H21 VPX 57
VPX H22 H22 H 0 1 N N N -3.705 -11.427 61.232 -1.265 -2.500 0.925 H22 VPX 58
VPX H23 H23 H 0 1 N N N -5.259 -9.862 62.086 0.426 -3.638 -1.187 H23 VPX 59
VPX H24 H24 H 0 1 N N N -6.900 -8.392 61.041 1.232 -1.507 -1.901 H24 VPX 60
VPX H25 H25 H 0 1 N N N -5.693 -9.908 58.570 -0.674 -1.026 0.495 H25 VPX 61
VPX H27 H27 H 0 1 N N N -5.147 -7.277 60.453 -0.821 -0.835 -2.543 H27 VPX 62
VPX H29 H29 H 0 1 N N N -4.378 -9.594 57.598 -3.019 0.050 -3.290 H29 VPX 63
VPX H30 H30 H 0 1 N N N -2.620 -9.178 55.903 -5.289 0.901 -2.764 H30 VPX 64
VPX H31 H31 H 0 1 N N N -1.699 -5.478 57.840 -4.385 0.382 1.399 H31 VPX 65
VPX H32 H32 H 0 1 N N N 0.091 -5.853 57.230 -6.032 0.991 1.846 H32 VPX 66
VPX H33 H33 H 0 1 N N N 1.750 -6.173 53.305 -9.842 2.511 0.667 H33 VPX 67
VPX H34 H34 H 0 1 N N N -0.170 -7.562 52.610 -9.184 2.356 -1.697 H34 VPX 68
VPX H35 H35 H 0 1 N N N -1.961 -8.096 54.226 -6.949 1.527 -2.306 H35 VPX 69
# #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
VPX CAH CAI DOUB Y N 1
VPX CAH CAJ SING Y N 2
VPX CAI CAZ SING Y N 3
VPX CAJ CBC DOUB Y N 4
VPX CAZ FAE SING N N 5
VPX CAZ CAN DOUB Y N 6
VPX CBC CAN SING Y N 7
VPX CBC CBB SING N N 8
VPX CAL CBB DOUB Y N 9
VPX CAL CAK SING Y N 10
VPX CBB CAM SING Y N 11
VPX CAK CBA DOUB Y N 12
VPX CAM NAT DOUB Y N 13
VPX CAA CAO SING N N 14
VPX CBA NAT SING Y N 15
VPX CBA CAF SING N N 16
VPX CAP CAQ SING N N 17
VPX CAP CBE SING N N 18
VPX OAV CAO SING N N 19
VPX OAV CAX SING N N 20
VPX CAQ CBI SING N N 21
VPX CAX OAC DOUB N N 22
VPX CAX NAU SING N N 23
VPX CAG CAF DOUB N E 24
VPX CAG CBF SING N N 25
VPX NAU CBE SING N N 26
VPX CBE CAR SING N N 27
VPX CBI CBF SING N N 28
VPX CBI CBG SING N N 29
VPX CAB CBD SING N N 30
VPX CBF CBJ SING N N 31
VPX CAR CBG SING N N 32
VPX CBD CBJ SING N N 33
VPX CBD OAW SING N N 34
VPX CBG CAS SING N N 35
VPX CBJ CBH SING N N 36
VPX CAS CBH SING N N 37
VPX OAW CAY SING N N 38
VPX CBH CAY SING N N 39
VPX CAY OAD DOUB N N 40
VPX CAA H1 SING N N 41
VPX CAA H2 SING N N 42
VPX CAA H3 SING N N 43
VPX CAO H4 SING N N 44
VPX CAO H5 SING N N 45
VPX NAU H6 SING N N 46
VPX CBE H7 SING N N 47
VPX CAR H8 SING N N 48
VPX CAR H9 SING N N 49
VPX CAP H10 SING N N 50
VPX CAP H11 SING N N 51
VPX CAQ H12 SING N N 52
VPX CAQ H13 SING N N 53
VPX CBI H14 SING N N 54
VPX CBG H15 SING N N 55
VPX CAS H16 SING N N 56
VPX CAS H17 SING N N 57
VPX CBH H18 SING N N 58
VPX CBD H19 SING N N 59
VPX CAB H20 SING N N 60
VPX CAB H21 SING N N 61
VPX CAB H22 SING N N 62
VPX CBJ H23 SING N N 63
VPX CBF H24 SING N N 64
VPX CAG H25 SING N N 65
VPX CAF H27 SING N N 66
VPX CAK H29 SING N N 67
VPX CAL H30 SING N N 68
VPX CAM H31 SING N N 69
VPX CAN H32 SING N N 70
VPX CAI H33 SING N N 71
VPX CAH H34 SING N N 72
VPX CAJ H35 SING N N 73
# #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
VPX SMILES ACDLabs 12.01 "Fc1cccc(c1)c2ccc(nc2)\C=C\C4C3C(CC(NC(=O)OCC)CC3)CC5C(=O)OC(C45)C"
VPX InChI InChI 1.03 "InChI=1S/C29H33FN2O4/c1-3-35-29(34)32-23-10-11-24-20(14-23)15-26-27(17(2)36-28(26)33)25(24)12-9-22-8-7-19(16-31-22)18-5-4-6-21(30)13-18/h4-9,12-13,16-17,20,23-27H,3,10-11,14-15H2,1-2H3,(H,32,34)/b12-9+/t17-,20+,23-,24-,25+,26-,27+/m1/s1"
VPX InChIKey InChI 1.03 ZBGXUVOIWDMMJE-QHNZEKIYSA-N
VPX SMILES_CANONICAL CACTVS 3.370 "CCOC(=O)N[C@@H]1CC[C@@H]2[C@@H](C1)C[C@@H]3[C@@H]([C@@H](C)OC3=O)[C@H]2\C=C\c4ccc(cn4)c5cccc(F)c5"
VPX SMILES CACTVS 3.370 "CCOC(=O)N[CH]1CC[CH]2[CH](C1)C[CH]3[CH]([CH](C)OC3=O)[CH]2C=Cc4ccc(cn4)c5cccc(F)c5"
VPX SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CCOC(=O)N[C@@H]1CC[C@@H]2[C@@H](C1)C[C@@H]3[C@H]([C@H]2/C=C/c4ccc(cn4)c5cccc(c5)F)[C@H](OC3=O)C"
VPX SMILES "OpenEye OEToolkits" 1.7.6 "CCOC(=O)NC1CCC2C(C1)CC3C(C2C=Cc4ccc(cn4)c5cccc(c5)F)C(OC3=O)C"
# #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
VPX "SYSTEMATIC NAME" ACDLabs 12.01 "ethyl [(1R,3aR,4aR,6R,8aR,9S,9aS)-9-{(E)-2-[5-(3-fluorophenyl)pyridin-2-yl]ethenyl}-1-methyl-3-oxododecahydronaphtho[2,3-c]furan-6-yl]carbamate"
VPX "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "ethyl N-[(1R,3aR,4aR,6R,8aR,9S,9aS)-9-[(E)-2-[5-(3-fluorophenyl)pyridin-2-yl]ethenyl]-1-methyl-3-oxidanylidene-3a,4,4a,5,6,7,8,8a,9,9a-decahydro-1H-benzo[f][2]benzofuran-6-yl]carbamate"
# #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
VPX "Create component" 2012-08-23 PDBJ
VPX "Initial release" 2012-12-07 RCSB
VPX "Modify synonyms" 2020-06-05 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id VPX
_pdbx_chem_comp_synonyms.name vorapaxar
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
##