data_VPZ # _chem_comp.id VPZ _chem_comp.name "(2~{R},3~{R},4~{S},5~{R},6~{R})-2-[3,5-bis(chloranyl)-4-fluoranyl-phenyl]sulfanyl-6-(hydroxymethyl)-4-[4-(1,3-thiazol-2-yl)-1,2,3-triazol-1-yl]oxane-3,5-diol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C17 H15 Cl2 F N4 O4 S2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-03-24 _chem_comp.pdbx_modified_date 2024-06-07 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 493.360 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VPZ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8OJP _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VPZ C15 C1 C 0 1 Y N N N N N -29.397 23.798 -13.768 4.197 4.407 0.266 C15 VPZ 1 VPZ C14 C2 C 0 1 Y N N N N N -41.215 24.697 -12.102 -2.099 -0.105 0.349 C14 VPZ 2 VPZ C13 C3 C 0 1 Y N N N N N -42.375 24.684 -11.348 -2.962 0.649 1.122 C13 VPZ 3 VPZ C12 C4 C 0 1 Y N N N N N -43.005 23.479 -10.966 -4.192 1.034 0.614 C12 VPZ 4 VPZ C11 C5 C 0 1 Y N N N N N -42.482 22.336 -11.611 -4.560 0.665 -0.670 C11 VPZ 5 VPZ C10 C6 C 0 1 Y N N N N N -41.357 22.302 -12.372 -3.700 -0.089 -1.446 C10 VPZ 6 VPZ C8 C7 C 0 1 Y N N N N N -31.423 23.051 -14.428 3.592 2.309 -0.192 C8 VPZ 7 VPZ C9 C8 C 0 1 Y N N N N N -40.774 23.526 -12.693 -2.464 -0.472 -0.941 C9 VPZ 8 VPZ C6 C9 C 0 1 Y N N N N N -33.739 23.111 -13.474 2.860 -0.050 -0.813 C6 VPZ 9 VPZ C5 C10 C 0 1 N N S N N N -36.302 22.638 -13.478 2.409 -2.514 -0.703 C5 VPZ 10 VPZ N1 N1 N 0 1 Y N N N N N -33.371 22.093 -15.484 3.700 0.183 1.173 N1 VPZ 11 VPZ C2 C11 C 0 1 N N R N N N -37.732 21.736 -11.650 0.774 -2.766 1.166 C2 VPZ 12 VPZ C3 C12 C 0 1 N N N N N N -38.015 20.750 -10.527 1.217 -1.433 1.771 C3 VPZ 13 VPZ O3 O1 O 0 1 N N N N N N -39.383 20.784 -10.013 0.162 -0.900 2.576 O3 VPZ 14 VPZ C4 C13 C 0 1 N N R N N N -36.697 23.966 -12.993 1.223 -2.269 -1.640 C4 VPZ 15 VPZ F F1 F 0 1 N N N N N N -44.123 23.434 -10.195 -5.034 1.771 1.372 F VPZ 16 VPZ CL1 CL1 CL 0 0 N N N N N N -43.235 20.828 -11.130 -6.102 1.150 -1.303 CL1 VPZ 17 VPZ CL CL2 CL 0 0 N N N N N N -43.002 26.131 -10.560 -2.504 1.112 2.731 CL VPZ 18 VPZ S S1 S 0 1 N N N N N N -39.373 23.590 -13.658 -1.366 -1.433 -1.929 S VPZ 19 VPZ C C14 C 0 1 N N R N N N -38.088 23.965 -12.437 0.068 -1.660 -0.841 C VPZ 20 VPZ O2 O2 O 0 1 N N N N N N -36.662 24.906 -14.074 0.805 -3.509 -2.216 O2 VPZ 21 VPZ C1 C15 C 0 1 N N R N N N -36.380 21.646 -12.313 1.958 -3.419 0.448 C1 VPZ 22 VPZ O1 O3 O 0 1 N N N N N N -35.424 22.007 -11.301 3.037 -3.596 1.368 O1 VPZ 23 VPZ O O4 O 0 1 N N N N N N -38.140 23.046 -11.376 -0.282 -2.538 0.231 O VPZ 24 VPZ N N2 N 0 1 Y N N N N N -34.900 22.668 -13.966 2.880 -1.235 -0.164 N VPZ 25 VPZ N2 N3 N 0 1 Y N N N N N -34.724 22.017 -15.175 3.384 -1.053 1.005 N2 VPZ 26 VPZ C7 C16 C 0 1 Y N N N N N -32.856 22.787 -14.467 3.395 0.863 0.052 C7 VPZ 27 VPZ S1 S2 S 0 1 Y N N N N N -30.399 22.375 -15.615 3.189 3.159 -1.681 S1 VPZ 28 VPZ C16 C17 C 0 1 Y N N N N N -29.002 23.105 -14.908 3.767 4.665 -0.973 C16 VPZ 29 VPZ N3 N4 N 0 1 Y N N N N N -30.767 23.766 -13.520 4.098 3.156 0.658 N3 VPZ 30 VPZ H15 H1 H 0 1 N N N N N N -28.699 24.318 -13.128 4.605 5.177 0.904 H15 VPZ 31 VPZ H14 H2 H 0 1 N N N N N N -40.658 25.614 -12.228 -1.141 -0.406 0.745 H14 VPZ 32 VPZ H10 H3 H 0 1 N N N N N N -40.934 21.369 -12.713 -3.987 -0.376 -2.447 H10 VPZ 33 VPZ H6 H4 H 0 1 N N N N N N -33.547 23.601 -12.531 2.498 0.137 -1.814 H6 VPZ 34 VPZ H5 H5 H 0 1 N N N N N N -36.975 22.310 -14.284 3.215 -2.999 -1.253 H5 VPZ 35 VPZ H2 H6 H 0 1 N N N N N N -38.418 21.405 -12.444 0.421 -3.426 1.959 H2 VPZ 36 VPZ H31 H7 H 0 1 N N N N N N -37.816 19.736 -10.904 2.101 -1.590 2.389 H31 VPZ 37 VPZ H32 H8 H 0 1 N N N N N N -37.331 20.973 -9.695 1.453 -0.731 0.971 H32 VPZ 38 VPZ HO3 H9 H 0 1 N N N N N N -39.477 20.143 -9.319 0.374 -0.054 2.992 HO3 VPZ 39 VPZ H4 H10 H 0 1 N N N N N N -36.000 24.284 -12.203 1.520 -1.581 -2.432 H4 VPZ 40 VPZ H H11 H 0 1 N N N N N N -38.321 24.975 -12.070 0.374 -0.696 -0.437 H VPZ 41 VPZ HO2 H12 H 0 1 N N N N N N -36.918 25.764 -13.757 0.056 -3.428 -2.822 HO2 VPZ 42 VPZ H1 H13 H 0 1 N N N N N N -36.205 20.624 -12.680 1.654 -4.388 0.051 H1 VPZ 43 VPZ HO1 H14 H 0 1 N N N N N N -35.476 21.389 -10.581 2.821 -4.159 2.123 HO1 VPZ 44 VPZ H16 H15 H 0 1 N N N N N N -27.993 23.035 -15.287 3.773 5.631 -1.456 H16 VPZ 45 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VPZ S1 C16 SING Y N 1 VPZ S1 C8 SING Y N 2 VPZ N1 N2 DOUB Y N 3 VPZ N1 C7 SING Y N 4 VPZ N2 N SING Y N 5 VPZ C16 C15 DOUB Y N 6 VPZ C7 C8 SING N N 7 VPZ C7 C6 DOUB Y N 8 VPZ C8 N3 DOUB Y N 9 VPZ O2 C4 SING N N 10 VPZ N C5 SING N N 11 VPZ N C6 SING Y N 12 VPZ C15 N3 SING Y N 13 VPZ S C9 SING N N 14 VPZ S C SING N N 15 VPZ C5 C4 SING N N 16 VPZ C5 C1 SING N N 17 VPZ C4 C SING N N 18 VPZ C9 C10 DOUB Y N 19 VPZ C9 C14 SING Y N 20 VPZ C O SING N N 21 VPZ C10 C11 SING Y N 22 VPZ C1 C2 SING N N 23 VPZ C1 O1 SING N N 24 VPZ C14 C13 DOUB Y N 25 VPZ C2 O SING N N 26 VPZ C2 C3 SING N N 27 VPZ C11 CL1 SING N N 28 VPZ C11 C12 DOUB Y N 29 VPZ C13 C12 SING Y N 30 VPZ C13 CL SING N N 31 VPZ C12 F SING N N 32 VPZ C3 O3 SING N N 33 VPZ C15 H15 SING N N 34 VPZ C14 H14 SING N N 35 VPZ C10 H10 SING N N 36 VPZ C6 H6 SING N N 37 VPZ C5 H5 SING N N 38 VPZ C2 H2 SING N N 39 VPZ C3 H31 SING N N 40 VPZ C3 H32 SING N N 41 VPZ O3 HO3 SING N N 42 VPZ C4 H4 SING N N 43 VPZ C H SING N N 44 VPZ O2 HO2 SING N N 45 VPZ C1 H1 SING N N 46 VPZ O1 HO1 SING N N 47 VPZ C16 H16 SING N N 48 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VPZ InChI InChI 1.06 "InChI=1S/C17H15Cl2FN4O4S2/c18-8-3-7(4-9(19)12(8)20)30-17-15(27)13(14(26)11(6-25)28-17)24-5-10(22-23-24)16-21-1-2-29-16/h1-5,11,13-15,17,25-27H,6H2/t11-,13+,14+,15-,17-/m1/s1" VPZ InChIKey InChI 1.06 QJQNWNOQNZZJCB-YNIRGQLTSA-N VPZ SMILES_CANONICAL CACTVS 3.385 "OC[C@H]1O[C@H](Sc2cc(Cl)c(F)c(Cl)c2)[C@H](O)[C@H]([C@H]1O)n3cc(nn3)c4sccn4" VPZ SMILES CACTVS 3.385 "OC[CH]1O[CH](Sc2cc(Cl)c(F)c(Cl)c2)[CH](O)[CH]([CH]1O)n3cc(nn3)c4sccn4" VPZ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1csc(n1)c2cn(nn2)[C@H]3[C@H]([C@H](O[C@@H]([C@@H]3O)Sc4cc(c(c(c4)Cl)F)Cl)CO)O" VPZ SMILES "OpenEye OEToolkits" 2.0.7 "c1csc(n1)c2cn(nn2)C3C(C(OC(C3O)Sc4cc(c(c(c4)Cl)F)Cl)CO)O" # _pdbx_chem_comp_identifier.comp_id VPZ _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{R},3~{R},4~{S},5~{R},6~{R})-2-[3,5-bis(chloranyl)-4-fluoranyl-phenyl]sulfanyl-6-(hydroxymethyl)-4-[4-(1,3-thiazol-2-yl)-1,2,3-triazol-1-yl]oxane-3,5-diol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VPZ "Create component" 2023-03-24 PDBE VPZ "Initial release" 2024-06-12 RCSB #