data_VQ5 # _chem_comp.id VQ5 _chem_comp.name "[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl ~{N}-(3-chloranyl-2-methyl-phenyl)carbonylsulfamate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C18 H19 Cl N6 O7 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-08-03 _chem_comp.pdbx_modified_date 2024-07-26 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 498.897 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VQ5 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8K5T _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VQ5 CL CL1 CL 0 0 N N N N N N 21.422 2.744 15.510 4.228 -4.529 -0.403 CL VQ5 1 VQ5 C16 C1 C 0 1 Y N N N N N 20.389 3.616 16.708 4.049 -3.024 0.445 C16 VQ5 2 VQ5 C15 C2 C 0 1 Y N N N N N 19.795 2.865 17.696 3.665 -1.888 -0.241 C15 VQ5 3 VQ5 C20 C3 C 0 1 N N N N N N 20.094 1.390 17.613 3.402 -1.954 -1.723 C20 VQ5 4 VQ5 C17 C4 C 0 1 Y N N N N N 20.201 4.995 16.658 4.285 -2.967 1.808 C17 VQ5 5 VQ5 C18 C5 C 0 1 Y N N N N N 19.407 5.622 17.614 4.143 -1.772 2.490 C18 VQ5 6 VQ5 C19 C6 C 0 1 Y N N N N N 18.809 4.868 18.614 3.766 -0.629 1.816 C19 VQ5 7 VQ5 C14 C7 C 0 1 Y N N N N N 19.003 3.486 18.666 3.521 -0.680 0.443 C14 VQ5 8 VQ5 C13 C8 C 0 1 N N N N N N 18.321 2.730 19.773 3.111 0.540 -0.285 C13 VQ5 9 VQ5 O5 O1 O 0 1 N N N N N N 17.428 3.280 20.387 2.790 0.471 -1.455 O5 VQ5 10 VQ5 N6 N1 N 0 1 N N N N N N 18.702 1.484 20.042 3.094 1.729 0.350 N6 VQ5 11 VQ5 S S1 S 0 1 N N N N N N 18.023 0.511 21.091 2.635 3.095 -0.465 S VQ5 12 VQ5 O11 O2 O 0 1 N N N N N N 18.793 0.707 22.291 2.689 4.160 0.475 O11 VQ5 13 VQ5 O12 O3 O 0 1 N N N N N N 18.143 -0.840 20.614 3.363 3.099 -1.685 O12 VQ5 14 VQ5 O4 O4 O 0 1 N N N N N N 16.548 0.814 21.395 1.170 2.926 -0.839 O4 VQ5 15 VQ5 C10 C9 C 0 1 N N N N N N 15.524 0.832 20.409 0.267 3.093 0.257 C10 VQ5 16 VQ5 C1 C10 C 0 1 N N R N N N 14.361 1.610 20.995 -1.170 2.902 -0.233 C1 VQ5 17 VQ5 C2 C11 C 0 1 N N S N N N 13.243 1.897 20.019 -2.157 3.186 0.916 C2 VQ5 18 VQ5 O2 O5 O 0 1 N N N N N N 12.379 0.769 19.895 -3.031 4.262 0.571 O2 VQ5 19 VQ5 C3 C12 C 0 1 N N R N N N 12.555 3.054 20.691 -2.954 1.867 1.066 C3 VQ5 20 VQ5 O3 O6 O 0 1 N N N N N N 11.638 2.545 21.662 -4.340 2.132 1.289 O3 VQ5 21 VQ5 C4 C13 C 0 1 N N R N N N 13.678 3.797 21.387 -2.734 1.196 -0.314 C4 VQ5 22 VQ5 O1 O7 O 0 1 N N N N N N 14.778 2.901 21.448 -1.370 1.539 -0.641 O1 VQ5 23 VQ5 N1 N2 N 0 1 Y N N N N N 14.089 4.983 20.620 -2.891 -0.257 -0.212 N1 VQ5 24 VQ5 C7 C14 C 0 1 Y N N N N N 15.215 5.135 19.902 -1.891 -1.165 -0.030 C7 VQ5 25 VQ5 N2 N3 N 0 1 Y N N N N N 15.249 6.357 19.336 -2.386 -2.368 0.016 N2 VQ5 26 VQ5 C5 C15 C 0 1 Y N N N N N 13.381 6.102 20.530 -4.072 -0.952 -0.276 C5 VQ5 27 VQ5 N3 N4 N 0 1 Y N N N N N 12.178 6.478 21.063 -5.349 -0.620 -0.434 N3 VQ5 28 VQ5 C9 C16 C 0 1 Y N N N N N 11.699 7.701 20.792 -6.285 -1.545 -0.455 C9 VQ5 29 VQ5 N4 N5 N 0 1 Y N N N N N 12.391 8.569 20.011 -6.014 -2.831 -0.322 N4 VQ5 30 VQ5 C8 C17 C 0 1 Y N N N N N 13.601 8.237 19.457 -4.766 -3.258 -0.159 C8 VQ5 31 VQ5 C6 C18 C 0 1 Y N N N N N 14.115 6.973 19.719 -3.731 -2.307 -0.133 C6 VQ5 32 VQ5 N5 N6 N 0 1 N N N N N N 14.308 9.088 18.666 -4.494 -4.606 -0.009 N5 VQ5 33 VQ5 H1 H1 H 0 1 N N N N N N 21.001 1.166 18.193 2.332 -2.075 -1.897 H1 VQ5 34 VQ5 H2 H2 H 0 1 N N N N N N 19.247 0.821 18.023 3.744 -1.032 -2.194 H2 VQ5 35 VQ5 H3 H3 H 0 1 N N N N N N 20.252 1.107 16.562 3.938 -2.801 -2.151 H3 VQ5 36 VQ5 H4 H4 H 0 1 N N N N N N 20.671 5.577 15.879 4.580 -3.859 2.340 H4 VQ5 37 VQ5 H5 H5 H 0 1 N N N N N N 19.257 6.691 17.578 4.329 -1.734 3.554 H5 VQ5 38 VQ5 H6 H6 H 0 1 N N N N N N 18.191 5.352 19.355 3.655 0.303 2.351 H6 VQ5 39 VQ5 H7 H7 H 0 1 N N N N N N 19.488 1.130 19.536 3.351 1.784 1.284 H7 VQ5 40 VQ5 H8 H8 H 0 1 N N N N N N 15.210 -0.195 20.171 0.490 2.355 1.027 H8 VQ5 41 VQ5 H9 H9 H 0 1 N N N N N N 15.887 1.326 19.496 0.380 4.095 0.671 H9 VQ5 42 VQ5 H10 H10 H 0 1 N N N N N N 13.949 1.038 21.839 -1.368 3.573 -1.069 H10 VQ5 43 VQ5 H11 H11 H 0 1 N N N N N N 13.653 2.205 19.046 -1.617 3.412 1.836 H11 VQ5 44 VQ5 H12 H12 H 0 1 N N N N N N 12.844 0.059 19.468 -3.710 4.446 1.234 H12 VQ5 45 VQ5 H13 H13 H 0 1 N N N N N N 12.059 3.700 19.952 -2.543 1.253 1.867 H13 VQ5 46 VQ5 H14 H14 H 0 1 N N N N N N 11.198 3.269 22.092 -4.520 2.631 2.098 H14 VQ5 47 VQ5 H15 H15 H 0 1 N N N N N N 13.355 4.091 22.396 -3.421 1.607 -1.054 H15 VQ5 48 VQ5 H16 H16 H 0 1 N N N N N N 15.984 4.384 19.794 -0.843 -0.923 0.062 H16 VQ5 49 VQ5 H17 H17 H 0 1 N N N N N N 10.746 8.000 21.202 -7.313 -1.241 -0.585 H17 VQ5 50 VQ5 H18 H18 H 0 1 N N N N N N 13.808 9.949 18.571 -3.579 -4.905 0.116 H18 VQ5 51 VQ5 H19 H19 H 0 1 N N N N N N 15.200 9.265 19.081 -5.217 -5.252 -0.028 H19 VQ5 52 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VQ5 CL C16 SING N N 1 VQ5 C17 C16 DOUB Y N 2 VQ5 C17 C18 SING Y N 3 VQ5 C16 C15 SING Y N 4 VQ5 C20 C15 SING N N 5 VQ5 C18 C19 DOUB Y N 6 VQ5 C15 C14 DOUB Y N 7 VQ5 C19 C14 SING Y N 8 VQ5 N5 C8 SING N N 9 VQ5 C14 C13 SING N N 10 VQ5 N2 C6 SING Y N 11 VQ5 N2 C7 DOUB Y N 12 VQ5 C8 C6 SING Y N 13 VQ5 C8 N4 DOUB Y N 14 VQ5 C6 C5 DOUB Y N 15 VQ5 C13 N6 SING N N 16 VQ5 C13 O5 DOUB N N 17 VQ5 O2 C2 SING N N 18 VQ5 C7 N1 SING Y N 19 VQ5 N4 C9 SING Y N 20 VQ5 C2 C3 SING N N 21 VQ5 C2 C1 SING N N 22 VQ5 N6 S SING N N 23 VQ5 C10 C1 SING N N 24 VQ5 C10 O4 SING N N 25 VQ5 C5 N1 SING Y N 26 VQ5 C5 N3 SING Y N 27 VQ5 O12 S DOUB N N 28 VQ5 N1 C4 SING N N 29 VQ5 C3 C4 SING N N 30 VQ5 C3 O3 SING N N 31 VQ5 C9 N3 DOUB Y N 32 VQ5 C1 O1 SING N N 33 VQ5 S O4 SING N N 34 VQ5 S O11 DOUB N N 35 VQ5 C4 O1 SING N N 36 VQ5 C20 H1 SING N N 37 VQ5 C20 H2 SING N N 38 VQ5 C20 H3 SING N N 39 VQ5 C17 H4 SING N N 40 VQ5 C18 H5 SING N N 41 VQ5 C19 H6 SING N N 42 VQ5 N6 H7 SING N N 43 VQ5 C10 H8 SING N N 44 VQ5 C10 H9 SING N N 45 VQ5 C1 H10 SING N N 46 VQ5 C2 H11 SING N N 47 VQ5 O2 H12 SING N N 48 VQ5 C3 H13 SING N N 49 VQ5 O3 H14 SING N N 50 VQ5 C4 H15 SING N N 51 VQ5 C7 H16 SING N N 52 VQ5 C9 H17 SING N N 53 VQ5 N5 H18 SING N N 54 VQ5 N5 H19 SING N N 55 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VQ5 InChI InChI 1.06 "InChI=1S/C18H19ClN6O7S/c1-8-9(3-2-4-10(8)19)17(28)24-33(29,30)31-5-11-13(26)14(27)18(32-11)25-7-23-12-15(20)21-6-22-16(12)25/h2-4,6-7,11,13-14,18,26-27H,5H2,1H3,(H,24,28)(H2,20,21,22)/t11-,13-,14-,18-/m1/s1" VQ5 InChIKey InChI 1.06 NHHJUHWTWOXCDU-XWXWGSFUSA-N VQ5 SMILES_CANONICAL CACTVS 3.385 "Cc1c(Cl)cccc1C(=O)N[S](=O)(=O)OC[C@H]2O[C@H]([C@H](O)[C@@H]2O)n3cnc4c(N)ncnc34" VQ5 SMILES CACTVS 3.385 "Cc1c(Cl)cccc1C(=O)N[S](=O)(=O)OC[CH]2O[CH]([CH](O)[CH]2O)n3cnc4c(N)ncnc34" VQ5 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1c(cccc1Cl)C(=O)NS(=O)(=O)OC[C@@H]2[C@H]([C@H]([C@@H](O2)n3cnc4c3ncnc4N)O)O" VQ5 SMILES "OpenEye OEToolkits" 2.0.7 "Cc1c(cccc1Cl)C(=O)NS(=O)(=O)OCC2C(C(C(O2)n3cnc4c3ncnc4N)O)O" # _pdbx_chem_comp_identifier.comp_id VQ5 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl ~{N}-(3-chloranyl-2-methyl-phenyl)carbonylsulfamate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VQ5 "Create component" 2023-08-03 PDBJ VQ5 "Initial release" 2024-07-31 RCSB #