data_VQR # _chem_comp.id VQR _chem_comp.name "methyl (4~{S})-4-[[(2~{S})-4-methyl-2-(phenylmethoxycarbonylamino)pentanoyl]amino]-5-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]pentanoate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H35 N3 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-03-28 _chem_comp.pdbx_modified_date 2024-01-12 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 461.551 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VQR _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8OKB _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VQR C1 C1 C 0 1 N N N N N N 12.239 -33.396 -0.174 5.935 5.062 -1.260 C1 VQR 1 VQR C10 C2 C 0 1 N N N N N N 10.576 -26.598 -2.770 2.196 -3.017 -1.613 C10 VQR 2 VQR C11 C3 C 0 1 N N N N N N 15.108 -27.765 0.333 0.772 -0.346 0.197 C11 VQR 3 VQR C12 C4 C 0 1 N N S N N N 15.958 -26.978 -0.668 -0.358 0.198 1.033 C12 VQR 4 VQR C13 C5 C 0 1 N N N N N N 17.348 -26.663 -0.105 -0.400 -0.536 2.374 C13 VQR 5 VQR C14 C6 C 0 1 N N N N N N 18.356 -27.811 -0.112 0.869 -0.218 3.169 C14 VQR 6 VQR C15 C7 C 0 1 N N N N N N 18.324 -28.525 -1.451 0.869 1.261 3.559 C15 VQR 7 VQR C16 C8 C 0 1 N N N N N N 18.192 -28.801 1.034 0.907 -1.079 4.433 C16 VQR 8 VQR C17 C9 C 0 1 N N N N N N 15.033 -24.724 -0.320 -2.696 0.760 0.636 C17 VQR 9 VQR C18 C10 C 0 1 N N N N N N 13.712 -22.759 -0.134 -4.995 1.371 0.442 C18 VQR 10 VQR C19 C11 C 0 1 Y N N N N N 12.232 -22.729 -0.374 -6.238 0.944 -0.296 C19 VQR 11 VQR C2 C12 C 0 1 N N N N N N 11.818 -31.713 -1.814 4.965 2.917 -0.891 C2 VQR 12 VQR C20 C13 C 0 1 Y N N N N N 11.620 -21.612 -0.913 -6.530 1.492 -1.531 C20 VQR 13 VQR C21 C14 C 0 1 Y N N N N N 10.252 -21.600 -1.136 -7.671 1.102 -2.208 C21 VQR 14 VQR C22 C15 C 0 1 Y N N N N N 9.491 -22.704 -0.828 -8.518 0.163 -1.650 C22 VQR 15 VQR C23 C16 C 0 1 Y N N N N N 10.090 -23.821 -0.297 -8.224 -0.386 -0.415 C23 VQR 16 VQR C24 C17 C 0 1 Y N N N N N 11.458 -23.835 -0.073 -7.082 0.001 0.259 C24 VQR 17 VQR C3 C18 C 0 1 N N N N N N 13.006 -31.077 -1.152 3.826 1.931 -0.953 C3 VQR 18 VQR C4 C19 C 0 1 N N N N N N 13.720 -30.069 -2.049 4.280 0.591 -0.370 C4 VQR 19 VQR C5 C20 C 0 1 N N S N N N 13.652 -28.629 -1.537 3.125 -0.410 -0.432 C5 VQR 20 VQR C6 C21 C 0 1 N N N N N N 12.249 -28.025 -1.594 3.614 -1.782 0.034 C6 VQR 21 VQR C7 C22 C 0 1 N N S N N N 11.780 -27.509 -2.954 2.495 -2.810 -0.145 C7 VQR 22 VQR C8 C23 C 0 1 N N N N N N 12.756 -26.616 -3.722 2.954 -4.202 0.349 C8 VQR 23 VQR C9 C24 C 0 1 N N N N N N 11.829 -25.725 -4.530 2.271 -5.139 -0.672 C9 VQR 24 VQR N1 N1 N 0 1 N N N N N N 10.657 -25.626 -3.673 2.076 -4.329 -1.880 N1 VQR 25 VQR N2 N2 N 0 1 N N N N N N 14.130 -28.541 -0.154 2.039 0.044 0.440 N2 VQR 26 VQR N3 N3 N 0 1 N N N N N N 15.293 -25.772 -1.123 -1.627 -0.000 0.328 N3 VQR 27 VQR O1 O1 O 0 1 N N N N N N 11.483 -32.908 -1.308 4.795 4.167 -1.351 O1 VQR 28 VQR O2 O2 O 0 1 N N N N N N 11.225 -31.208 -2.731 6.030 2.582 -0.429 O2 VQR 29 VQR O3 O3 O 0 1 N N N N N N 9.683 -26.742 -1.922 2.077 -2.128 -2.430 O3 VQR 30 VQR O4 O4 O 0 1 N N N N N N 15.346 -27.687 1.540 0.541 -1.135 -0.694 O4 VQR 31 VQR O5 O5 O 0 1 N N N N N N 15.434 -24.588 0.822 -2.583 1.671 1.433 O5 VQR 32 VQR O6 O6 O 0 1 N N N N N N 14.188 -23.868 -0.935 -3.888 0.511 0.062 O6 VQR 33 VQR H1 H1 H 0 1 N N N N N N 11.853 -34.381 0.128 6.229 5.171 -0.216 H1 VQR 34 VQR H2 H2 H 0 1 N N N N N N 13.299 -33.488 -0.452 6.766 4.651 -1.831 H2 VQR 35 VQR H3 H3 H 0 1 N N N N N N 12.140 -32.690 0.664 5.663 6.038 -1.664 H3 VQR 36 VQR H4 H4 H 0 1 N N N N N N 16.108 -27.630 -1.541 -0.201 1.263 1.206 H4 VQR 37 VQR H5 H5 H 0 1 N N N N N N 17.772 -25.841 -0.700 -1.273 -0.211 2.939 H5 VQR 38 VQR H6 H6 H 0 1 N N N N N N 17.221 -26.334 0.937 -0.459 -1.610 2.199 H6 VQR 39 VQR H7 H7 H 0 1 N N N N N N 19.355 -27.362 -0.009 1.744 -0.432 2.556 H7 VQR 40 VQR H8 H8 H 0 1 N N N N N N 19.053 -29.349 -1.445 0.768 1.874 2.663 H8 VQR 41 VQR H9 H9 H 0 1 N N N N N N 17.316 -28.928 -1.627 0.034 1.460 4.231 H9 VQR 42 VQR H10 H10 H 0 1 N N N N N N 18.580 -27.815 -2.251 1.805 1.505 4.062 H10 VQR 43 VQR H11 H11 H 0 1 N N N N N N 18.218 -28.261 1.992 0.907 -2.133 4.155 H11 VQR 44 VQR H12 H12 H 0 1 N N N N N N 17.228 -29.322 0.933 1.811 -0.853 4.999 H12 VQR 45 VQR H13 H13 H 0 1 N N N N N N 19.011 -29.535 1.004 0.032 -0.865 5.046 H13 VQR 46 VQR H14 H14 H 0 1 N N N N N N 13.930 -22.927 0.931 -4.757 2.403 0.187 H14 VQR 47 VQR H15 H15 H 0 1 N N N N N N 14.178 -21.817 -0.459 -5.165 1.292 1.515 H15 VQR 48 VQR H16 H16 H 0 1 N N N N N N 12.212 -20.743 -1.162 -5.869 2.226 -1.967 H16 VQR 49 VQR H17 H17 H 0 1 N N N N N N 9.782 -20.721 -1.553 -7.900 1.530 -3.172 H17 VQR 50 VQR H18 H18 H 0 1 N N N N N N 8.425 -22.693 -1.003 -9.409 -0.142 -2.178 H18 VQR 51 VQR H19 H19 H 0 1 N N N N N N 9.495 -24.689 -0.054 -8.887 -1.120 0.021 H19 VQR 52 VQR H20 H20 H 0 1 N N N N N N 11.924 -24.718 0.340 -6.851 -0.430 1.222 H20 VQR 53 VQR H21 H21 H 0 1 N N N N N N 13.719 -31.868 -0.877 2.984 2.312 -0.375 H21 VQR 54 VQR H22 H22 H 0 1 N N N N N N 12.665 -30.558 -0.244 3.522 1.792 -1.990 H22 VQR 55 VQR H23 H23 H 0 1 N N N N N N 13.258 -30.104 -3.047 5.122 0.210 -0.948 H23 VQR 56 VQR H24 H24 H 0 1 N N N N N N 14.778 -30.361 -2.124 4.585 0.731 0.667 H24 VQR 57 VQR H25 H25 H 0 1 N N N N N N 14.307 -28.016 -2.173 2.762 -0.482 -1.457 H25 VQR 58 VQR H26 H26 H 0 1 N N N N N N 12.220 -27.181 -0.889 4.479 -2.080 -0.558 H26 VQR 59 VQR H27 H27 H 0 1 N N N N N N 11.539 -28.799 -1.268 3.894 -1.730 1.087 H27 VQR 60 VQR H28 H28 H 0 1 N N N N N N 11.497 -28.363 -3.587 1.597 -2.492 0.386 H28 VQR 61 VQR H29 H29 H 0 1 N N N N N N 13.406 -27.212 -4.380 4.039 -4.295 0.299 H29 VQR 62 VQR H30 H30 H 0 1 N N N N N N 13.376 -26.023 -3.034 2.594 -4.396 1.359 H30 VQR 63 VQR H31 H31 H 0 1 N N N N N N 12.279 -24.736 -4.703 2.912 -5.994 -0.887 H31 VQR 64 VQR H32 H32 H 0 1 N N N N N N 11.577 -26.187 -5.496 1.308 -5.476 -0.289 H32 VQR 65 VQR H33 H33 H 0 1 N N N N N N 9.978 -24.897 -3.756 1.891 -4.694 -2.760 H33 VQR 66 VQR H34 H34 H 0 1 N N N N N N 13.670 -29.133 0.508 2.231 0.625 1.192 H34 VQR 67 VQR H35 H35 H 0 1 N N N N N N 15.014 -25.717 -2.082 -1.698 -0.679 -0.361 H35 VQR 68 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VQR C9 C8 SING N N 1 VQR C9 N1 SING N N 2 VQR C8 C7 SING N N 3 VQR N1 C10 SING N N 4 VQR C7 C10 SING N N 5 VQR C7 C6 SING N N 6 VQR C10 O3 DOUB N N 7 VQR O2 C2 DOUB N N 8 VQR C4 C5 SING N N 9 VQR C4 C3 SING N N 10 VQR C2 O1 SING N N 11 VQR C2 C3 SING N N 12 VQR C6 C5 SING N N 13 VQR C5 N2 SING N N 14 VQR C15 C14 SING N N 15 VQR O1 C1 SING N N 16 VQR C21 C20 DOUB Y N 17 VQR C21 C22 SING Y N 18 VQR N3 C12 SING N N 19 VQR N3 C17 SING N N 20 VQR O6 C17 SING N N 21 VQR O6 C18 SING N N 22 VQR C20 C19 SING Y N 23 VQR C22 C23 DOUB Y N 24 VQR C12 C13 SING N N 25 VQR C12 C11 SING N N 26 VQR C19 C18 SING N N 27 VQR C19 C24 DOUB Y N 28 VQR C17 O5 DOUB N N 29 VQR C23 C24 SING Y N 30 VQR N2 C11 SING N N 31 VQR C14 C13 SING N N 32 VQR C14 C16 SING N N 33 VQR C11 O4 DOUB N N 34 VQR C1 H1 SING N N 35 VQR C1 H2 SING N N 36 VQR C1 H3 SING N N 37 VQR C12 H4 SING N N 38 VQR C13 H5 SING N N 39 VQR C13 H6 SING N N 40 VQR C14 H7 SING N N 41 VQR C15 H8 SING N N 42 VQR C15 H9 SING N N 43 VQR C15 H10 SING N N 44 VQR C16 H11 SING N N 45 VQR C16 H12 SING N N 46 VQR C16 H13 SING N N 47 VQR C18 H14 SING N N 48 VQR C18 H15 SING N N 49 VQR C20 H16 SING N N 50 VQR C21 H17 SING N N 51 VQR C22 H18 SING N N 52 VQR C23 H19 SING N N 53 VQR C24 H20 SING N N 54 VQR C3 H21 SING N N 55 VQR C3 H22 SING N N 56 VQR C4 H23 SING N N 57 VQR C4 H24 SING N N 58 VQR C5 H25 SING N N 59 VQR C6 H26 SING N N 60 VQR C6 H27 SING N N 61 VQR C7 H28 SING N N 62 VQR C8 H29 SING N N 63 VQR C8 H30 SING N N 64 VQR C9 H31 SING N N 65 VQR C9 H32 SING N N 66 VQR N1 H33 SING N N 67 VQR N2 H34 SING N N 68 VQR N3 H35 SING N N 69 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VQR InChI InChI 1.06 "InChI=1S/C24H35N3O6/c1-16(2)13-20(27-24(31)33-15-17-7-5-4-6-8-17)23(30)26-19(9-10-21(28)32-3)14-18-11-12-25-22(18)29/h4-8,16,18-20H,9-15H2,1-3H3,(H,25,29)(H,26,30)(H,27,31)/t18-,19-,20-/m0/s1" VQR InChIKey InChI 1.06 JGJNNQJIGUGNAT-UFYCRDLUSA-N VQR SMILES_CANONICAL CACTVS 3.385 "COC(=O)CC[C@@H](C[C@@H]1CCNC1=O)NC(=O)[C@H](CC(C)C)NC(=O)OCc2ccccc2" VQR SMILES CACTVS 3.385 "COC(=O)CC[CH](C[CH]1CCNC1=O)NC(=O)[CH](CC(C)C)NC(=O)OCc2ccccc2" VQR SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)C[C@@H](C(=O)N[C@@H](CCC(=O)OC)C[C@@H]1CCNC1=O)NC(=O)OCc2ccccc2" VQR SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)CC(C(=O)NC(CCC(=O)OC)CC1CCNC1=O)NC(=O)OCc2ccccc2" # _pdbx_chem_comp_identifier.comp_id VQR _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "methyl (4~{S})-4-[[(2~{S})-4-methyl-2-(phenylmethoxycarbonylamino)pentanoyl]amino]-5-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]pentanoate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VQR "Create component" 2023-03-28 PDBE VQR "Initial release" 2024-01-17 RCSB #