data_VQX # _chem_comp.id VQX _chem_comp.name "8-azido-1-((1S,2S,3S,4S,5R,6S)-2,3,4-trihydroxy-5-(hydroxymethyl)-7-azabicyclo[4.1.0]heptan-7-yl)octan-1-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C15 H26 N4 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-08-07 _chem_comp.pdbx_modified_date 2024-07-26 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 342.391 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VQX _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8K7V _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VQX N1 N1 N 0 1 N N N N N N 81.474 132.734 97.911 2.284 0.607 -0.887 N1 VQX 1 VQX C4 C1 C 0 1 N N S N N N 79.139 132.004 97.616 3.138 -0.415 -1.477 C4 VQX 2 VQX C5 C2 C 0 1 N N S N N N 80.134 133.172 97.529 3.718 0.914 -1.022 C5 VQX 3 VQX C6 C3 C 0 1 N N R N N N 80.176 133.972 96.206 4.508 1.012 0.274 C6 VQX 4 VQX C7 C4 C 0 1 N N N N N N 80.001 135.463 96.446 5.703 1.942 0.058 C7 VQX 5 VQX C8 C5 C 0 1 N N N N N N 82.206 131.807 97.281 1.055 0.997 -0.495 C8 VQX 6 VQX C10 C6 C 0 1 N N N N N N 84.670 132.177 97.352 -1.388 0.750 -0.148 C10 VQX 7 VQX C13 C7 C 0 1 N N N N N N 85.886 133.639 94.399 -5.042 -0.452 0.019 C13 VQX 8 VQX C1 C8 C 0 1 N N S N N N 79.267 133.414 95.110 5.014 -0.337 0.741 C1 VQX 9 VQX O1 O1 O 0 1 N N N N N N 81.022 135.972 97.303 6.387 2.136 1.297 O1 VQX 10 VQX C2 C9 C 0 1 N N S N N N 79.396 131.913 95.075 3.953 -1.413 0.689 C2 VQX 11 VQX O2 O2 O 0 1 N N N N N N 77.906 133.815 95.312 6.110 -0.730 -0.087 O2 VQX 12 VQX C3 C10 C 0 1 N N S N N N 78.748 131.309 96.311 3.472 -1.677 -0.709 C3 VQX 13 VQX O3 O3 O 0 1 N N N N N N 78.781 131.383 93.904 4.495 -2.621 1.228 O3 VQX 14 VQX O4 O4 O 0 1 N N N N N N 79.110 129.929 96.413 2.292 -2.481 -0.647 O4 VQX 15 VQX O5 O5 O 0 1 N N N N N N 81.948 130.609 97.316 0.895 2.093 -0.002 O5 VQX 16 VQX C9 C11 C 0 1 N N N N N N 83.411 132.333 96.562 -0.120 0.070 -0.670 C9 VQX 17 VQX C11 C12 C 0 1 N N N N N N 85.818 133.046 96.862 -2.581 -0.191 -0.326 C11 VQX 18 VQX C12 C13 C 0 1 N N N N N N 86.340 132.699 95.487 -3.849 0.489 0.196 C12 VQX 19 VQX H4 H2 H 0 1 N N N N N N 78.750 131.660 98.586 3.045 -0.550 -2.555 H4 VQX 20 VQX H6 H4 H 0 1 N N N N N N 79.812 133.891 98.296 4.006 1.625 -1.796 H6 VQX 21 VQX H7 H5 H 0 1 N N N N N N 81.201 133.852 95.826 3.867 1.435 1.048 H7 VQX 22 VQX H8 H6 H 0 1 N N N N N N 80.047 135.989 95.481 6.384 1.497 -0.668 H8 VQX 23 VQX H9 H7 H 0 1 N N N N N N 79.021 135.638 96.913 5.352 2.904 -0.317 H9 VQX 24 VQX H17 H8 H 0 1 N N N N N N 84.457 132.442 98.398 -1.265 0.985 0.909 H17 VQX 25 VQX H18 H9 H 0 1 N N N N N N 84.985 131.124 97.297 -1.564 1.669 -0.707 H18 VQX 26 VQX H24 H10 H 0 1 N N N N N N 85.206 134.425 94.758 -5.165 -0.688 -1.039 H24 VQX 27 VQX H25 H11 H 0 1 N N N N N N 86.718 134.099 93.845 -4.866 -1.371 0.578 H25 VQX 28 VQX H1 H13 H 0 1 N N N N N N 79.619 133.810 94.146 5.367 -0.243 1.768 H1 VQX 29 VQX H10 H14 H 0 1 N N N N N N 80.889 136.903 97.436 7.158 2.717 1.235 H10 VQX 30 VQX H2 H15 H 0 1 N N N N N N 80.465 131.653 95.082 3.108 -1.104 1.305 H2 VQX 31 VQX H11 H16 H 0 1 N N N N N N 77.854 134.763 95.330 6.493 -1.586 0.147 H11 VQX 32 VQX H3 H17 H 0 1 N N N N N N 77.657 131.390 96.198 4.243 -2.226 -1.249 H3 VQX 33 VQX H12 H18 H 0 1 N N N N N N 78.872 130.437 93.898 4.788 -2.545 2.147 H12 VQX 34 VQX H13 H19 H 0 1 N N N N N N 78.705 129.551 97.185 2.421 -3.337 -0.218 H13 VQX 35 VQX H15 H20 H 0 1 N N N N N N 83.521 131.786 95.614 -0.243 -0.166 -1.727 H15 VQX 36 VQX H16 H21 H 0 1 N N N N N N 83.257 133.402 96.353 0.055 -0.849 -0.111 H16 VQX 37 VQX H20 H22 H 0 1 N N N N N N 86.649 132.949 97.577 -2.704 -0.427 -1.383 H20 VQX 38 VQX H19 H23 H 0 1 N N N N N N 85.471 134.090 96.842 -2.406 -1.110 0.233 H19 VQX 39 VQX H21 H24 H 0 1 N N N N N N 85.996 131.685 95.233 -4.025 1.408 -0.363 H21 VQX 40 VQX H22 H25 H 0 1 N N N N N N 87.439 132.716 95.521 -3.726 0.724 1.253 H22 VQX 41 VQX C14 C14 C 0 1 N N N N N N ? ? ? -6.310 0.228 0.540 C14 VQX 42 VQX C15 C15 C 0 1 N N N N N N ? ? ? -7.503 -0.713 0.363 C15 VQX 43 VQX N2 N2 N 0 1 N N N N N N ? ? ? -8.717 -0.062 0.862 N2 VQX 44 VQX N3 N3 N 1 1 N N N N N N ? ? ? -9.584 0.117 0.170 N3 VQX 45 VQX N4 N4 N -1 1 N N N N N N ? ? ? -10.451 0.296 -0.523 N4 VQX 46 VQX H23 H12 H 0 1 N N N N N N ? ? ? -6.187 0.463 1.597 H23 VQX 47 VQX H26 H26 H 0 1 N N N N N N ? ? ? -6.485 1.147 -0.019 H26 VQX 48 VQX H27 H27 H 0 1 N N N N N N ? ? ? -7.626 -0.949 -0.695 H27 VQX 49 VQX H28 H28 H 0 1 N N N N N N ? ? ? -7.327 -1.632 0.922 H28 VQX 50 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VQX O3 C2 SING N N 1 VQX C13 C12 SING N N 2 VQX C2 C1 SING N N 3 VQX C2 C3 SING N N 4 VQX C1 O2 SING N N 5 VQX C1 C6 SING N N 6 VQX C12 C11 SING N N 7 VQX C6 C7 SING N N 8 VQX C6 C5 SING N N 9 VQX C3 O4 SING N N 10 VQX C3 C4 SING N N 11 VQX C7 O1 SING N N 12 VQX C9 C8 SING N N 13 VQX C9 C10 SING N N 14 VQX C11 C10 SING N N 15 VQX C8 O5 DOUB N N 16 VQX C8 N1 SING N N 17 VQX C5 C4 SING N N 18 VQX C5 N1 SING N N 19 VQX C4 H4 SING N N 20 VQX C5 H6 SING N N 21 VQX C6 H7 SING N N 22 VQX C7 H8 SING N N 23 VQX C7 H9 SING N N 24 VQX C10 H17 SING N N 25 VQX C10 H18 SING N N 26 VQX C13 H24 SING N N 27 VQX C13 H25 SING N N 28 VQX C1 H1 SING N N 29 VQX O1 H10 SING N N 30 VQX C2 H2 SING N N 31 VQX O2 H11 SING N N 32 VQX C3 H3 SING N N 33 VQX O3 H12 SING N N 34 VQX O4 H13 SING N N 35 VQX C9 H15 SING N N 36 VQX C9 H16 SING N N 37 VQX C11 H20 SING N N 38 VQX C11 H19 SING N N 39 VQX C12 H21 SING N N 40 VQX C12 H22 SING N N 41 VQX C13 C14 SING N N 42 VQX C14 C15 SING N N 43 VQX C15 N2 SING N N 44 VQX N2 N3 DOUB N N 45 VQX N3 N4 DOUB N N 46 VQX C14 H23 SING N N 47 VQX C14 H26 SING N N 48 VQX C15 H27 SING N N 49 VQX C15 H28 SING N N 50 VQX N1 C4 SING N N 51 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VQX InChI InChI 1.06 "InChI=1S/C15H26N4O5/c16-18-17-7-5-3-1-2-4-6-10(21)19-11-9(8-20)13(22)15(24)14(23)12(11)19/h9,11-15,20,22-24H,1-8H2/t9-,11-,12-,13-,14-,15-,19-/m0/s1" VQX InChIKey InChI 1.06 BVEYUFNXLOTLDG-DWDHYAMMSA-N VQX SMILES_CANONICAL CACTVS 3.385 "OC[C@@H]1[C@H](O)[C@H](O)[C@@H](O)[C@@H]2[C@H]1N2C(=O)CCCCCCCN=[N+]=[N-]" VQX SMILES CACTVS 3.385 "OC[CH]1[CH](O)[CH](O)[CH](O)[CH]2[CH]1N2C(=O)CCCCCCCN=[N+]=[N-]" VQX SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C(CCCC(=O)N1[C@@H]2C1[C@@H]([C@H]([C@H]([C@H]2CO)O)O)O)CCCN=[N+]=[N-]" VQX SMILES "OpenEye OEToolkits" 2.0.7 "C(CCCC(=O)N1C2C1C(C(C(C2CO)O)O)O)CCCN=[N+]=[N-]" # _pdbx_chem_comp_identifier.comp_id VQX _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "8-azido-1-[(1~{S},2~{R},3~{S},4~{S},5~{S})-2-(hydroxymethyl)-3,4,5-tris(oxidanyl)-7-azabicyclo[4.1.0]heptan-7-yl]octan-1-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VQX "Create component" 2023-08-07 PDBJ VQX "Modify coordinates" 2024-02-07 PDBJ VQX "Initial release" 2024-07-31 RCSB #