data_VR # _chem_comp.id VR _chem_comp.name "2-METHYLPROPYL HYDROGEN (R)-METHYLPHOSPHONATE" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C5 H13 O3 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2010-09-02 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 152.129 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VR _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 2XQG _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VR C4 C4 C 0 1 N N N N N N -13.639 -39.426 -20.349 3.609 -0.864 -0.004 C4 VR 1 VR C3 C3 C 0 1 N N N N N N -14.308 -39.691 -21.701 2.452 0.051 0.402 C3 VR 2 VR C5 C5 C 0 1 N N N N N N -13.489 -40.608 -22.510 2.667 1.442 -0.198 C5 VR 3 VR C2 C2 C 0 1 N N N N N N -14.327 -38.394 -22.487 1.136 -0.530 -0.116 C2 VR 4 VR O2 O2 O 0 1 N N N N N N -15.379 -37.706 -21.934 0.045 0.260 0.361 O2 VR 5 VR P1 P1 P 0 1 N N R N N N -16.364 -36.933 -22.869 -1.492 -0.064 0.009 P1 VR 6 VR C1 C1 C 0 1 N N N N N N -17.963 -37.813 -22.658 -2.579 1.080 0.923 C1 VR 7 VR O1 O1 O 0 1 N N N N N N -16.189 -36.701 -24.319 -1.805 -1.457 0.398 O1 VR 8 VR O3 O3 O 0 1 N Y N N N N -16.632 -35.548 -21.969 -1.731 0.118 -1.572 O3 VR 9 VR H41C H41C H 0 0 N N N N N N -12.549 -39.362 -20.485 4.547 -0.449 0.365 H41C VR 10 VR H42C H42C H 0 0 N N N N N N -14.013 -38.478 -19.935 3.457 -1.855 0.424 H42C VR 11 VR H43C H43C H 0 0 N N N N N N -13.875 -40.247 -19.656 3.648 -0.939 -1.091 H43C VR 12 VR H3 H3 H 0 1 N N N N N N -15.310 -40.105 -21.512 2.413 0.127 1.489 H3 VR 13 VR H51C H51C H 0 0 N N N N N N -13.285 -40.151 -23.489 1.843 2.094 0.091 H51C VR 14 VR H52C H52C H 0 0 N N N N N N -12.539 -40.805 -21.992 3.605 1.857 0.171 H52C VR 15 VR H53C H53C H 0 0 N N N N N N -14.032 -41.554 -22.653 2.706 1.367 -1.285 H53C VR 16 VR H21C H21C H 0 0 N N N N N N -13.381 -37.842 -22.380 1.140 -0.524 -1.206 H21C VR 17 VR H22C H22C H 0 0 N N N N N N -14.440 -38.551 -23.570 1.026 -1.555 0.240 H22C VR 18 VR H11C H11C H 0 0 N N N N N N -18.147 -37.989 -21.588 -2.349 2.106 0.637 H11C VR 19 VR H12C H12C H 0 0 N N N N N N -18.776 -37.200 -23.074 -3.620 0.860 0.685 H12C VR 20 VR H13C H13C H 0 0 N N N N N N -17.923 -38.777 -23.186 -2.417 0.956 1.994 H13C VR 21 VR H30 H30 H 0 1 N N N N N N -16.683 -35.773 -21.048 -1.545 1.010 -1.898 H30 VR 22 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VR C4 C3 SING N N 1 VR C3 C5 SING N N 2 VR C3 C2 SING N N 3 VR C2 O2 SING N N 4 VR O2 P1 SING N N 5 VR P1 C1 SING N N 6 VR P1 O1 DOUB N N 7 VR P1 O3 SING N N 8 VR C4 H41C SING N N 9 VR C4 H42C SING N N 10 VR C4 H43C SING N N 11 VR C3 H3 SING N N 12 VR C5 H51C SING N N 13 VR C5 H52C SING N N 14 VR C5 H53C SING N N 15 VR C2 H21C SING N N 16 VR C2 H22C SING N N 17 VR C1 H11C SING N N 18 VR C1 H12C SING N N 19 VR C1 H13C SING N N 20 VR O3 H30 SING N N 21 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VR SMILES ACDLabs 10.04 "O=P(O)(OCC(C)C)C" VR SMILES_CANONICAL CACTVS 3.352 "CC(C)CO[P](C)(O)=O" VR SMILES CACTVS 3.352 "CC(C)CO[P](C)(O)=O" VR SMILES_CANONICAL "OpenEye OEToolkits" 1.6.1 "CC(C)CO[P@@](=O)(C)O" VR SMILES "OpenEye OEToolkits" 1.6.1 "CC(C)COP(=O)(C)O" VR InChI InChI 1.03 "InChI=1S/C5H13O3P/c1-5(2)4-8-9(3,6)7/h5H,4H2,1-3H3,(H,6,7)" VR InChIKey InChI 1.03 ZNGLGLXWTVMUCL-UHFFFAOYSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier VR "SYSTEMATIC NAME" ACDLabs 10.04 "2-methylpropyl hydrogen (R)-methylphosphonate" VR "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.6.1 "methyl-(2-methylpropoxy)phosphinic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VR "Create component" 2010-09-02 EBI VR "Modify descriptor" 2011-06-04 RCSB VR "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id VR _pdbx_chem_comp_pcm.modified_residue_id SER _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom P1 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom OG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #