data_VR2 # _chem_comp.id VR2 _chem_comp.name "1-[(3S)-5-(4-iodanylphenoxy)-3-methyl-pentyl]-3-pyridin-4-yl-imidazolidin-2-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H24 I N3 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2013-11-06 _chem_comp.pdbx_modified_date 2014-09-05 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 465.328 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VR2 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4CDW _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VR2 CAJ CAJ C 0 1 Y N N 102.807 262.170 102.630 -4.068 0.613 -1.786 CAJ VR2 1 VR2 CAH CAH C 0 1 Y N N 101.653 262.310 103.394 -5.405 0.688 -1.446 CAH VR2 2 VR2 CAU CAU C 0 1 Y N N 100.531 261.541 103.104 -5.829 0.252 -0.204 CAU VR2 3 VR2 IAC IAC I 0 1 N N N 98.789 261.697 104.249 -7.857 0.368 0.308 IAC VR2 4 VR2 CAI CAI C 0 1 Y N N 100.553 260.636 102.051 -4.917 -0.261 0.700 CAI VR2 5 VR2 CAK CAK C 0 1 Y N N 101.704 260.504 101.285 -3.579 -0.338 0.364 CAK VR2 6 VR2 CAV CAV C 0 1 Y N N 102.829 261.265 101.574 -3.151 0.098 -0.881 CAV VR2 7 VR2 OAS OAS O 0 1 N N N 103.952 261.029 100.844 -1.836 0.022 -1.214 OAS VR2 8 VR2 CAL CAL C 0 1 N N N 105.099 261.771 101.259 -0.948 -0.518 -0.232 CAL VR2 9 VR2 CAM CAM C 0 1 N N N 106.193 261.452 100.239 0.479 -0.523 -0.783 CAM VR2 10 VR2 CAX CAX C 0 1 N N S 107.438 262.289 100.532 1.429 -1.102 0.268 CAX VR2 11 VR2 CAA CAA C 0 1 N N N 108.171 261.686 101.731 1.084 -2.572 0.513 CAA VR2 12 VR2 CAN CAN C 0 1 N N N 108.344 262.209 99.304 2.871 -0.993 -0.233 CAN VR2 13 VR2 CAO CAO C 0 1 N N N 109.410 263.300 99.399 3.829 -1.455 0.867 CAO VR2 14 VR2 NAY NAY N 0 1 N N N 110.247 263.285 98.182 5.209 -1.351 0.387 NAY VR2 15 VR2 CAT CAT C 0 1 N N N 110.530 264.330 97.408 5.996 -0.275 0.515 CAT VR2 16 VR2 OAB OAB O 0 1 N N N 110.087 265.458 97.620 5.633 0.751 1.058 OAB VR2 17 VR2 CAP CAP C 0 1 N N N 110.743 262.063 97.515 5.953 -2.414 -0.305 CAP VR2 18 VR2 CAQ CAQ C 0 1 N N N 111.851 262.648 96.641 7.332 -1.781 -0.579 CAQ VR2 19 VR2 NAZ NAZ N 0 1 N N N 111.347 264.019 96.403 7.219 -0.431 -0.008 NAZ VR2 20 VR2 CAW CAW C 0 1 Y N N 111.793 264.820 95.439 8.228 0.534 -0.007 CAW VR2 21 VR2 CAF CAF C 0 1 Y N N 112.800 264.366 94.595 8.019 1.787 0.566 CAF VR2 22 VR2 CAD CAD C 0 1 Y N N 113.406 265.227 93.688 9.041 2.712 0.546 CAD VR2 23 VR2 NAR NAR N 0 1 Y N N 112.990 266.561 93.618 10.204 2.424 -0.008 NAR VR2 24 VR2 CAE CAE C 0 1 Y N N 111.982 267.021 94.474 10.440 1.249 -0.561 CAE VR2 25 VR2 CAG CAG C 0 1 Y N N 111.398 266.153 95.389 9.472 0.267 -0.576 CAG VR2 26 VR2 HAJ HAJ H 0 1 N N N 103.682 262.761 102.856 -3.738 0.949 -2.758 HAJ VR2 27 VR2 HAH HAH H 0 1 N N N 101.628 263.015 104.212 -6.119 1.089 -2.151 HAH VR2 28 VR2 HAI HAI H 0 1 N N N 99.681 260.039 101.829 -5.250 -0.600 1.669 HAI VR2 29 VR2 HAK HAK H 0 1 N N N 101.724 259.806 100.461 -2.867 -0.739 1.071 HAK VR2 30 VR2 HAL1 HAL1 H 0 0 N N N 104.878 262.849 101.260 -0.988 0.094 0.669 HAL1 VR2 31 VR2 HAL2 HAL2 H 0 0 N N N 105.412 261.460 102.267 -1.249 -1.538 0.007 HAL2 VR2 32 VR2 HAM1 HAM1 H 0 0 N N N 106.449 260.384 100.301 0.518 -1.135 -1.684 HAM1 VR2 33 VR2 HAM2 HAM2 H 0 0 N N N 105.827 261.684 99.228 0.780 0.496 -1.023 HAM2 VR2 34 VR2 HAX HAX H 0 1 N N N 107.160 263.333 100.737 1.324 -0.544 1.198 HAX VR2 35 VR2 HAA1 HAA1 H 0 0 N N N 109.069 262.282 101.950 1.761 -2.984 1.261 HAA1 VR2 36 VR2 HAA2 HAA2 H 0 0 N N N 107.506 261.690 102.607 0.057 -2.650 0.869 HAA2 VR2 37 VR2 HAA3 HAA3 H 0 0 N N N 108.465 260.652 101.499 1.189 -3.130 -0.418 HAA3 VR2 38 VR2 HAN1 HAN1 H 0 0 N N N 108.829 261.222 99.267 2.998 -1.622 -1.114 HAN1 VR2 39 VR2 HAN2 HAN2 H 0 0 N N N 107.745 262.357 98.394 3.088 0.043 -0.492 HAN2 VR2 40 VR2 HAO1 HAO1 H 0 0 N N N 108.922 264.281 99.495 3.701 -0.826 1.748 HAO1 VR2 41 VR2 HAO2 HAO2 H 0 0 N N N 110.043 263.117 100.280 3.611 -2.492 1.125 HAO2 VR2 42 VR2 HAP1 HAP1 H 0 0 N N N 111.139 261.338 98.241 6.055 -3.290 0.335 HAP1 VR2 43 VR2 HAP2 HAP2 H 0 0 N N N 109.959 261.585 96.910 5.461 -2.678 -1.241 HAP2 VR2 44 VR2 HAQ1 HAQ1 H 0 0 N N N 112.815 262.661 97.170 8.117 -2.343 -0.074 HAQ1 VR2 45 VR2 HAQ2 HAQ2 H 0 0 N N N 111.957 262.090 95.699 7.524 -1.731 -1.651 HAQ2 VR2 46 VR2 HAF HAF H 0 1 N N N 113.114 263.334 94.645 7.069 2.030 1.020 HAF VR2 47 VR2 HAG HAG H 0 1 N N N 110.635 266.514 96.063 9.674 -0.694 -1.026 HAG VR2 48 VR2 HAD HAD H 0 1 N N N 114.193 264.869 93.041 8.888 3.686 0.988 HAD VR2 49 VR2 HAE HAE H 0 1 N N N 111.658 268.050 94.423 11.406 1.053 -1.003 HAE VR2 50 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VR2 CAJ CAH SING Y N 1 VR2 CAJ CAV DOUB Y N 2 VR2 CAH CAU DOUB Y N 3 VR2 CAU IAC SING N N 4 VR2 CAU CAI SING Y N 5 VR2 CAI CAK DOUB Y N 6 VR2 CAK CAV SING Y N 7 VR2 CAV OAS SING N N 8 VR2 OAS CAL SING N N 9 VR2 CAL CAM SING N N 10 VR2 CAM CAX SING N N 11 VR2 CAX CAA SING N N 12 VR2 CAX CAN SING N N 13 VR2 CAN CAO SING N N 14 VR2 CAO NAY SING N N 15 VR2 NAY CAT SING N N 16 VR2 NAY CAP SING N N 17 VR2 CAT OAB DOUB N N 18 VR2 CAT NAZ SING N N 19 VR2 CAP CAQ SING N N 20 VR2 CAQ NAZ SING N N 21 VR2 NAZ CAW SING N N 22 VR2 CAW CAF DOUB Y N 23 VR2 CAW CAG SING Y N 24 VR2 CAF CAD SING Y N 25 VR2 CAD NAR DOUB Y N 26 VR2 NAR CAE SING Y N 27 VR2 CAE CAG DOUB Y N 28 VR2 CAJ HAJ SING N N 29 VR2 CAH HAH SING N N 30 VR2 CAI HAI SING N N 31 VR2 CAK HAK SING N N 32 VR2 CAL HAL1 SING N N 33 VR2 CAL HAL2 SING N N 34 VR2 CAM HAM1 SING N N 35 VR2 CAM HAM2 SING N N 36 VR2 CAX HAX SING N N 37 VR2 CAA HAA1 SING N N 38 VR2 CAA HAA2 SING N N 39 VR2 CAA HAA3 SING N N 40 VR2 CAN HAN1 SING N N 41 VR2 CAN HAN2 SING N N 42 VR2 CAO HAO1 SING N N 43 VR2 CAO HAO2 SING N N 44 VR2 CAP HAP1 SING N N 45 VR2 CAP HAP2 SING N N 46 VR2 CAQ HAQ1 SING N N 47 VR2 CAQ HAQ2 SING N N 48 VR2 CAF HAF SING N N 49 VR2 CAG HAG SING N N 50 VR2 CAD HAD SING N N 51 VR2 CAE HAE SING N N 52 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VR2 SMILES ACDLabs 12.01 "Ic3ccc(OCCC(CCN2C(=O)N(c1ccncc1)CC2)C)cc3" VR2 InChI InChI 1.03 "InChI=1S/C20H24IN3O2/c1-16(9-15-26-19-4-2-17(21)3-5-19)8-12-23-13-14-24(20(23)25)18-6-10-22-11-7-18/h2-7,10-11,16H,8-9,12-15H2,1H3/t16-/m0/s1" VR2 InChIKey InChI 1.03 SVYVYARVADIYRJ-INIZCTEOSA-N VR2 SMILES_CANONICAL CACTVS 3.385 "C[C@H](CCOc1ccc(I)cc1)CCN2CCN(C2=O)c3ccncc3" VR2 SMILES CACTVS 3.385 "C[CH](CCOc1ccc(I)cc1)CCN2CCN(C2=O)c3ccncc3" VR2 SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "C[C@@H](CCN1CCN(C1=O)c2ccncc2)CCOc3ccc(cc3)I" VR2 SMILES "OpenEye OEToolkits" 1.9.2 "CC(CCN1CCN(C1=O)c2ccncc2)CCOc3ccc(cc3)I" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier VR2 "SYSTEMATIC NAME" ACDLabs 12.01 "1-[(3S)-5-(4-iodophenoxy)-3-methylpentyl]-3-(pyridin-4-yl)imidazolidin-2-one" VR2 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "1-[(3S)-5-(4-iodanylphenoxy)-3-methyl-pentyl]-3-pyridin-4-yl-imidazolidin-2-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VR2 "Create component" 2013-11-06 EBI VR2 "Initial release" 2014-02-12 RCSB VR2 "Modify descriptor" 2014-09-05 RCSB #